Wall clock time and date at job start Mon Mar 30 2020 06:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86808 * 119.99790 * 2 1 4 4 H 1.48498 * 109.46944 * 269.99942 * 3 2 1 5 5 H 1.48496 * 109.47078 * 30.00210 * 3 2 1 6 6 H 1.48499 * 109.46955 * 150.00225 * 3 2 1 7 7 C 1.37879 * 120.00203 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99754 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00029 * 180.02562 * 7 2 1 10 10 H 1.09001 * 109.47556 * 59.99494 * 9 7 2 11 11 N 1.46905 * 109.46910 * 299.99533 * 9 7 2 12 12 C 1.50700 * 109.47079 * 179.97438 * 9 7 2 13 13 C 1.34223 * 125.03815 * 244.99601 * 12 9 7 14 14 C 1.46505 * 106.99904 * 179.97438 * 13 12 9 15 15 C 1.39639 * 134.00520 * 180.02562 * 14 13 12 16 16 C 1.36614 * 119.77565 * 180.02562 * 15 14 13 17 17 C 1.38932 * 120.52193 * 359.92776 * 16 15 14 18 18 Cl 1.73599 * 119.68490 * 180.02562 * 17 16 15 19 19 C 1.37860 * 120.63214 * 0.04349 * 17 16 15 20 20 C 1.39112 * 119.77282 * 359.97438 * 19 17 16 21 21 N 1.36869 * 125.03551 * 64.69545 * 12 9 7 22 22 H 0.97002 * 125.06512 * 359.97438 * 21 12 9 23 23 H 0.97001 * 119.99716 * 359.97438 * 1 2 3 24 24 H 1.00901 * 110.99869 * 300.00472 * 11 9 7 25 25 H 1.00896 * 110.99543 * 63.95595 * 11 9 7 26 26 H 1.08003 * 126.49852 * 0.02784 * 13 12 9 27 27 H 1.07994 * 120.11357 * 359.96300 * 15 14 13 28 28 H 1.08004 * 119.74031 * 179.97438 * 16 15 14 29 29 H 1.08001 * 120.11142 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 0.0000 10 1 3.8747 -0.6807 0.8905 11 7 4.0017 -0.5007 -1.1988 12 6 4.0140 -2.6148 -0.0001 13 6 4.7084 -3.1867 0.9960 14 6 4.9916 -4.5641 0.5850 15 6 5.6628 -5.6351 1.1785 16 6 5.7575 -6.8268 0.5173 17 6 5.1899 -6.9824 -0.7412 18 17 5.3228 -8.5065 -1.5617 19 6 4.5225 -5.9381 -1.3448 20 6 4.4147 -4.7160 -0.6889 21 7 3.8247 -3.5150 -1.0135 22 1 3.3471 -3.3337 -1.8381 23 1 -0.4850 0.8401 0.0004 24 1 3.6784 -0.9578 -2.0383 25 1 3.7322 0.4715 -1.1898 26 1 5.0019 -2.7202 1.9249 27 1 6.1064 -5.5215 2.1566 28 1 6.2772 -7.6546 0.9767 29 1 4.0847 -6.0682 -2.3235 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238626464.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:02 Heat of formation + Delta-G solvation = 27.427765 kcal Electronic energy + Delta-G solvation = -15314.217208 eV Core-core repulsion = 12648.313621 eV Total energy + Delta-G solvation = -2665.903587 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.21474 -38.62713 -37.24645 -36.18762 -33.90370 -32.83312 -30.32049 -29.84175 -28.01471 -24.83968 -23.21389 -22.21416 -21.05720 -19.20510 -18.82192 -17.48937 -17.04296 -16.47429 -16.05717 -15.51015 -15.35105 -14.92070 -14.78497 -14.27112 -14.04870 -13.72687 -13.53391 -13.14635 -12.85113 -12.48477 -12.22871 -12.16393 -11.81679 -11.76534 -11.68484 -10.96041 -10.58602 -9.60003 -9.06248 -8.57749 -8.44566 -6.56446 0.06987 0.58469 1.14234 1.23976 1.33662 1.42002 1.81225 2.18019 2.31423 2.85389 2.89490 3.68716 3.82897 4.10633 4.19885 4.30633 4.41382 4.57111 4.66180 4.83450 5.01680 5.09218 5.25942 5.29102 5.48655 5.76578 5.84478 5.99093 6.19248 6.26809 6.44004 6.58490 6.66799 7.11694 8.70781 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.047426 B = 0.004939 C = 0.004781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.255517 B = 5668.092780 C = 5854.565325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.022 3.978 3 Si 0.938 3.062 4 H -0.254 1.254 5 H -0.292 1.292 6 H -0.241 1.241 7 C -0.557 4.557 8 H 0.033 0.967 9 C 0.235 3.765 10 H 0.066 0.934 11 N -0.837 5.837 12 C 0.137 3.863 13 C -0.234 4.234 14 C -0.117 4.117 15 C -0.062 4.062 16 C -0.140 4.140 17 C -0.026 4.026 18 Cl -0.067 7.067 19 C -0.125 4.125 20 C 0.083 3.917 21 N -0.578 5.578 22 H 0.418 0.582 23 H 0.271 0.729 24 H 0.336 0.664 25 H 0.323 0.677 26 H 0.155 0.845 27 H 0.154 0.846 28 H 0.156 0.844 29 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.950 -10.063 -1.359 15.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.178 4.178 3 Si 0.762 3.238 4 H -0.179 1.179 5 H -0.219 1.219 6 H -0.165 1.165 7 C -0.597 4.597 8 H 0.051 0.949 9 C 0.124 3.876 10 H 0.083 0.917 11 N -0.370 5.370 12 C 0.027 3.973 13 C -0.259 4.259 14 C -0.122 4.122 15 C -0.081 4.081 16 C -0.160 4.160 17 C -0.053 4.053 18 Cl -0.038 7.038 19 C -0.147 4.147 20 C -0.025 4.025 21 N -0.180 5.180 22 H 0.255 0.745 23 H 0.080 0.920 24 H 0.148 0.852 25 H 0.139 0.861 26 H 0.173 0.827 27 H 0.172 0.828 28 H 0.173 0.827 29 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 12.467 -10.211 -1.261 16.164 hybrid contribution -1.756 1.003 -0.711 2.144 sum 10.710 -9.208 -1.972 14.262 Atomic orbital electron populations 1.70041 1.08277 1.28609 1.50261 1.25890 0.95556 1.03088 0.93304 0.85952 0.79420 0.78528 0.79853 1.17931 1.21910 1.16497 1.21765 0.91587 0.93490 1.52878 0.94871 1.18084 0.91063 0.86357 0.92046 0.91656 1.59633 1.66269 1.05820 1.05283 1.20441 0.96488 0.91859 0.88485 1.21613 1.09301 0.93662 1.01316 1.19543 1.02764 0.95214 0.94688 1.20466 0.97018 0.90288 1.00295 1.20702 1.02913 0.98874 0.93505 1.20449 1.02890 0.87110 0.94897 1.98342 1.97009 1.29510 1.78918 1.19877 1.03950 0.89602 1.01259 1.18255 1.00003 0.87801 0.96418 1.41685 1.48378 1.08881 1.19039 0.74454 0.92019 0.85224 0.86089 0.82715 0.82839 0.82664 0.84370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.87 13.96 21.45 0.30 -54.57 15 2 C 0.02 1.18 5.47 84.65 0.46 1.64 15 3 Si 0.94 40.00 24.61 68.60 1.69 41.69 15 4 H -0.25 -9.99 7.01 99.48 0.70 -9.29 15 5 H -0.29 -12.65 7.11 99.48 0.71 -11.94 15 6 H -0.24 -9.63 6.54 99.48 0.65 -8.98 15 7 C -0.56 -29.46 9.29 25.60 0.24 -29.23 15 8 H 0.03 2.00 7.98 -2.91 -0.02 1.97 15 9 C 0.23 10.25 2.71 43.42 0.12 10.37 15 10 H 0.07 2.89 7.15 -2.39 -0.02 2.87 15 11 N -0.84 -32.84 9.14 -174.94 -1.60 -34.44 15 12 C 0.14 5.50 5.82 40.86 0.24 5.74 15 13 C -0.23 -8.64 10.91 23.51 0.26 -8.38 15 14 C -0.12 -3.92 6.37 -20.19 -0.13 -4.05 15 15 C -0.06 -1.64 10.05 22.23 0.22 -1.42 15 16 C -0.14 -3.34 9.75 22.06 0.21 -3.13 15 17 C -0.03 -0.67 6.31 22.35 0.14 -0.52 15 18 Cl -0.07 -1.48 28.93 -2.72 -0.08 -1.56 15 19 C -0.13 -3.61 9.84 22.39 0.22 -3.39 15 20 C 0.08 2.82 7.28 39.03 0.28 3.11 15 21 N -0.58 -20.90 6.07 -175.91 -1.07 -21.97 15 22 H 0.42 13.95 8.96 -92.71 -0.83 13.12 15 23 H 0.27 14.86 8.31 -92.71 -0.77 14.09 15 24 H 0.34 12.41 8.98 -89.69 -0.81 11.60 15 25 H 0.32 12.63 4.29 -89.70 -0.39 12.25 15 26 H 0.16 5.10 8.06 -2.91 -0.02 5.08 15 27 H 0.15 3.15 8.06 -2.91 -0.02 3.13 15 28 H 0.16 2.78 8.06 -2.91 -0.02 2.75 15 29 H 0.14 3.50 8.06 -2.91 -0.02 3.48 15 Total: -1.00 -60.64 265.09 0.64 -60.00 By element: Atomic # 1 Polarization: 40.99 SS G_CDS: -0.87 Total: 40.12 kcal Atomic # 6 Polarization: -31.53 SS G_CDS: 2.27 Total: -29.27 kcal Atomic # 7 Polarization: -108.61 SS G_CDS: -2.37 Total: -110.98 kcal Atomic # 14 Polarization: 40.00 SS G_CDS: 1.69 Total: 41.69 kcal Atomic # 17 Polarization: -1.48 SS G_CDS: -0.08 Total: -1.56 kcal Total: -60.64 0.64 -60.00 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238626464.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.424 kcal (2) G-P(sol) polarization free energy of solvation -60.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds