Wall clock time and date at job start Mon Mar 30 2020 06:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30696 * 1 3 3 Si 1.86799 * 119.99705 * 2 1 4 4 H 1.48499 * 109.47119 * 274.97851 * 3 2 1 5 5 H 1.48495 * 109.47321 * 34.97943 * 3 2 1 6 6 H 1.48504 * 109.47279 * 154.97849 * 3 2 1 7 7 C 1.40229 * 120.00307 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99878 * 186.07540 * 7 2 1 9 9 C 1.39582 * 119.99911 * 6.06690 * 7 2 1 10 10 N 1.33194 * 125.70134 * 354.25947 * 9 7 2 11 11 C 1.32213 * 109.69673 * 179.71964 * 10 9 7 12 12 C 1.39011 * 108.31118 * 0.40624 * 11 10 9 13 13 C 1.47224 * 126.69054 * 179.85710 * 12 11 10 14 14 C 1.39939 * 120.17527 * 139.66746 * 13 12 11 15 15 C 1.37999 * 119.82181 * 180.02562 * 14 13 12 16 16 F 1.35096 * 119.90810 * 179.97438 * 15 14 13 17 17 C 1.38741 * 120.18845 * 0.02562 * 15 14 13 18 18 C 1.38322 * 120.36032 * 359.97438 * 17 15 14 19 19 C 1.38152 * 120.17637 * 0.02562 * 18 17 15 20 20 F 1.35100 * 120.09418 * 179.72063 * 19 18 17 21 21 N 1.37525 * 106.61751 * 359.60523 * 12 11 10 22 22 H 0.96996 * 126.61152 * 180.26015 * 21 12 11 23 23 H 0.96993 * 120.00462 * 0.02562 * 1 2 3 24 24 H 1.08001 * 125.84537 * 180.25042 * 11 10 9 25 25 H 1.07996 * 120.08899 * 0.02562 * 14 13 12 26 26 H 1.07994 * 119.82060 * 179.97438 * 17 15 14 27 27 H 1.08001 * 119.90932 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2409 1.6178 0.0000 4 1 2.3831 2.1072 -1.3948 5 1 1.4949 2.6200 0.8026 6 1 3.5871 1.4122 0.5922 7 6 2.0082 -1.2144 0.0005 8 1 3.0836 -1.2169 0.0995 9 6 1.3162 -2.4199 -0.1267 10 7 -0.0085 -2.5573 -0.1470 11 6 -0.3220 -3.8342 -0.2860 12 6 0.8565 -4.5687 -0.3507 13 6 0.9762 -6.0283 -0.5012 14 6 1.9601 -6.5711 -1.3352 15 6 2.0654 -7.9403 -1.4714 16 9 3.0142 -8.4662 -2.2764 17 6 1.1988 -8.7784 -0.7846 18 6 0.2235 -8.2501 0.0418 19 6 0.1047 -6.8816 0.1891 20 9 -0.8522 -6.3673 0.9923 21 7 1.8888 -3.6653 -0.2526 22 1 2.8374 -3.8669 -0.2693 23 1 -0.4850 0.8399 -0.0004 24 1 -1.3224 -4.2379 -0.3375 25 1 2.6352 -5.9202 -1.8709 26 1 1.2863 -9.8490 -0.8958 27 1 -0.4475 -8.9092 0.5727 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259087600.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:28 Heat of formation + Delta-G solvation = -21.349993 kcal Electronic energy + Delta-G solvation = -17017.525722 eV Core-core repulsion = 13797.710293 eV Total energy + Delta-G solvation = -3219.815430 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 250.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.74013 -48.35836 -39.93748 -38.06353 -33.66930 -31.73823 -30.69891 -29.79548 -28.22426 -25.26903 -22.65422 -22.24091 -20.12951 -19.80334 -18.01206 -17.08720 -16.78523 -16.36916 -15.76577 -15.50831 -14.93383 -14.71505 -14.11163 -13.93719 -13.29626 -13.17155 -13.11732 -12.61041 -12.41173 -12.03598 -11.58805 -11.50049 -11.30521 -10.88564 -10.65419 -10.34156 -9.52085 -9.04515 -8.51206 -8.35147 -8.07109 -7.01377 -6.66445 -4.48982 1.17519 1.28924 2.90151 3.04523 3.07796 3.25782 3.82813 3.87370 4.37475 4.43824 4.56804 4.67920 4.91912 5.08799 5.41588 5.44394 5.45908 6.02577 6.22212 6.24417 6.31534 6.34411 6.43797 6.80983 7.03234 7.14343 7.41714 7.80023 7.99436 8.28620 8.69073 9.15810 9.90920 10.24659 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.037519 B = 0.005400 C = 0.004825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.115838 B = 5183.712841 C = 5801.358028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.726 5.726 2 C 0.079 3.921 3 Si 0.918 3.082 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.262 1.262 7 C -0.450 4.450 8 H 0.085 0.915 9 C 0.391 3.609 10 N -0.510 5.510 11 C 0.068 3.932 12 C -0.157 4.157 13 C 0.050 3.950 14 C -0.158 4.158 15 C 0.098 3.902 16 F -0.145 7.145 17 C -0.169 4.169 18 C -0.114 4.114 19 C 0.070 3.930 20 F -0.131 7.131 21 N -0.620 5.620 22 H 0.398 0.602 23 H 0.278 0.722 24 H 0.144 0.856 25 H 0.134 0.866 26 H 0.135 0.865 27 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.523 -9.905 -0.930 10.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.349 5.349 2 C -0.147 4.147 3 Si 0.742 3.258 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.186 1.186 7 C -0.488 4.488 8 H 0.103 0.897 9 C 0.153 3.847 10 N -0.229 5.229 11 C -0.094 4.094 12 C -0.266 4.266 13 C 0.047 3.953 14 C -0.177 4.177 15 C 0.078 3.922 16 F -0.123 7.123 17 C -0.188 4.188 18 C -0.133 4.133 19 C 0.049 3.951 20 F -0.109 7.109 21 N -0.230 5.230 22 H 0.233 0.767 23 H 0.089 0.911 24 H 0.161 0.839 25 H 0.152 0.848 26 H 0.153 0.847 27 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 1.698 -9.097 -0.850 9.293 hybrid contribution 1.409 -0.162 -0.148 1.426 sum 3.107 -9.259 -0.998 9.818 Atomic orbital electron populations 1.70002 1.07132 1.28477 1.29294 1.25816 0.94886 1.00734 0.93293 0.86148 0.80184 0.80389 0.79076 1.19429 1.19986 1.18617 1.18266 0.94482 0.87857 1.48179 0.89723 1.20170 0.87716 0.83780 0.93079 1.71174 1.10552 1.15111 1.26110 1.22837 0.95376 0.91151 1.00033 1.18826 0.90028 0.87088 1.30695 1.17831 0.93143 0.91058 0.93238 1.21059 1.02064 0.92905 1.01703 1.17530 0.89425 0.91641 0.93570 1.91465 1.62472 1.87072 1.71317 1.20722 0.97466 0.99875 1.00766 1.20745 0.99489 0.93060 1.00024 1.17712 0.91681 0.90997 0.94681 1.91492 1.61030 1.87570 1.70847 1.43164 1.06806 1.07152 1.65836 0.76739 0.91101 0.83896 0.84816 0.84742 0.84402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -19.18 11.89 55.56 0.66 -18.52 15 2 C 0.08 1.96 5.49 -17.29 -0.09 1.86 15 3 Si 0.92 18.02 29.57 -169.99 -5.03 13.00 15 4 H -0.27 -5.23 7.11 56.52 0.40 -4.83 15 5 H -0.27 -5.31 7.11 56.52 0.40 -4.90 15 6 H -0.26 -5.02 7.11 56.52 0.40 -4.61 15 7 C -0.45 -11.51 9.43 -38.33 -0.36 -11.87 15 8 H 0.08 1.98 7.86 -52.49 -0.41 1.56 15 9 C 0.39 10.36 7.57 -155.47 -1.18 9.18 15 10 N -0.51 -14.17 9.34 -12.19 -0.11 -14.28 15 11 C 0.07 1.67 10.97 -17.10 -0.19 1.48 15 12 C -0.16 -3.52 6.62 -81.38 -0.54 -4.06 15 13 C 0.05 0.95 5.85 -104.89 -0.61 0.34 15 14 C -0.16 -2.63 9.77 -39.03 -0.38 -3.01 15 15 C 0.10 1.46 7.29 -39.48 -0.29 1.18 15 16 F -0.14 -2.13 17.26 2.25 0.04 -2.09 15 17 C -0.17 -2.22 10.02 -39.36 -0.39 -2.61 15 18 C -0.11 -1.57 10.01 -39.58 -0.40 -1.96 15 19 C 0.07 1.20 7.25 -38.90 -0.28 0.92 15 20 F -0.13 -2.43 15.88 2.25 0.04 -2.40 15 21 N -0.62 -14.15 6.31 -8.38 -0.05 -14.20 15 22 H 0.40 7.80 8.96 -40.82 -0.37 7.44 15 23 H 0.28 6.62 8.29 -40.82 -0.34 6.28 15 24 H 0.14 3.21 7.81 -52.49 -0.41 2.80 15 25 H 0.13 2.16 8.06 -52.49 -0.42 1.74 15 26 H 0.13 1.38 8.06 -52.49 -0.42 0.96 15 27 H 0.14 1.49 8.06 -52.49 -0.42 1.06 15 LS Contribution 258.94 15.07 3.90 3.90 Total: -1.00 -28.79 258.94 -6.86 -35.66 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -1.59 Total: 7.49 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: -4.72 Total: -8.55 kcal Atomic # 7 Polarization: -47.50 SS G_CDS: 0.49 Total: -47.00 kcal Atomic # 9 Polarization: -4.56 SS G_CDS: 0.07 Total: -4.49 kcal Atomic # 14 Polarization: 18.02 SS G_CDS: -5.03 Total: 13.00 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -28.79 -6.86 -35.66 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259087600.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.305 kcal (2) G-P(sol) polarization free energy of solvation -28.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds