Wall clock time and date at job start Mon Mar 30 2020 06:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30696 * 1 3 3 Si 1.86799 * 119.99705 * 2 1 4 4 H 1.48499 * 109.47119 * 274.97851 * 3 2 1 5 5 H 1.48495 * 109.47321 * 34.97943 * 3 2 1 6 6 H 1.48504 * 109.47279 * 154.97849 * 3 2 1 7 7 C 1.40229 * 120.00307 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99878 * 186.07540 * 7 2 1 9 9 C 1.39582 * 119.99911 * 6.06690 * 7 2 1 10 10 N 1.33194 * 125.70134 * 354.25947 * 9 7 2 11 11 C 1.32213 * 109.69673 * 179.71964 * 10 9 7 12 12 C 1.39011 * 108.31118 * 0.40624 * 11 10 9 13 13 C 1.47224 * 126.69054 * 179.85710 * 12 11 10 14 14 C 1.39939 * 120.17527 * 139.66746 * 13 12 11 15 15 C 1.37999 * 119.82181 * 180.02562 * 14 13 12 16 16 F 1.35096 * 119.90810 * 179.97438 * 15 14 13 17 17 C 1.38741 * 120.18845 * 0.02562 * 15 14 13 18 18 C 1.38322 * 120.36032 * 359.97438 * 17 15 14 19 19 C 1.38152 * 120.17637 * 0.02562 * 18 17 15 20 20 F 1.35100 * 120.09418 * 179.72063 * 19 18 17 21 21 N 1.37525 * 106.61751 * 359.60523 * 12 11 10 22 22 H 0.96996 * 126.61152 * 180.26015 * 21 12 11 23 23 H 0.96993 * 120.00462 * 0.02562 * 1 2 3 24 24 H 1.08001 * 125.84537 * 180.25042 * 11 10 9 25 25 H 1.07996 * 120.08899 * 0.02562 * 14 13 12 26 26 H 1.07994 * 119.82060 * 179.97438 * 17 15 14 27 27 H 1.08001 * 119.90932 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3070 0.0000 0.0000 3 14 2.2409 1.6178 0.0000 4 1 2.3831 2.1072 -1.3948 5 1 1.4949 2.6200 0.8026 6 1 3.5871 1.4122 0.5922 7 6 2.0082 -1.2144 0.0005 8 1 3.0836 -1.2169 0.0995 9 6 1.3162 -2.4199 -0.1267 10 7 -0.0085 -2.5573 -0.1470 11 6 -0.3220 -3.8342 -0.2860 12 6 0.8565 -4.5687 -0.3507 13 6 0.9762 -6.0283 -0.5012 14 6 1.9601 -6.5711 -1.3352 15 6 2.0654 -7.9403 -1.4714 16 9 3.0142 -8.4662 -2.2764 17 6 1.1988 -8.7784 -0.7846 18 6 0.2235 -8.2501 0.0418 19 6 0.1047 -6.8816 0.1891 20 9 -0.8522 -6.3673 0.9923 21 7 1.8888 -3.6653 -0.2526 22 1 2.8374 -3.8669 -0.2693 23 1 -0.4850 0.8399 -0.0004 24 1 -1.3224 -4.2379 -0.3375 25 1 2.6352 -5.9202 -1.8709 26 1 1.2863 -9.8490 -0.8958 27 1 -0.4475 -8.9092 0.5727 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259087600.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:28 Heat of formation + Delta-G solvation = -38.294660 kcal Electronic energy + Delta-G solvation = -17018.260498 eV Core-core repulsion = 13797.710293 eV Total energy + Delta-G solvation = -3220.550206 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 250.061 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.93806 -49.78267 -41.75547 -39.40171 -35.46233 -33.27926 -32.47855 -31.13273 -29.94024 -26.95498 -24.09155 -23.61519 -21.96326 -21.55836 -19.61878 -18.42969 -18.23897 -17.78341 -17.49650 -16.79548 -16.34500 -16.25038 -15.35219 -15.33995 -15.07479 -14.83316 -14.59308 -14.19666 -13.87227 -13.48291 -13.18106 -12.96903 -12.81592 -12.53976 -12.09855 -11.90510 -11.22842 -10.53621 -10.33442 -9.96249 -9.64562 -8.80614 -8.45389 -6.38394 -0.15424 0.02547 1.31444 1.43932 1.59464 1.68148 2.22499 2.40407 2.66277 2.83182 3.18862 3.29485 3.50782 3.68089 3.86820 4.10928 4.20083 4.40613 4.77404 4.87501 4.98758 5.02132 5.10579 5.14203 5.26370 5.61430 5.83593 5.93902 6.17576 6.47159 6.85161 7.35670 8.06379 8.49576 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.037519 B = 0.005400 C = 0.004825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.115838 B = 5183.712841 C = 5801.358028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.032 3.968 3 Si 1.001 2.999 4 H -0.264 1.264 5 H -0.270 1.270 6 H -0.252 1.252 7 C -0.484 4.484 8 H 0.097 0.903 9 C 0.358 3.642 10 N -0.554 5.554 11 C 0.017 3.983 12 C -0.129 4.129 13 C 0.014 3.986 14 C -0.151 4.151 15 C 0.094 3.906 16 F -0.140 7.140 17 C -0.132 4.132 18 C -0.100 4.100 19 C 0.063 3.937 20 F -0.143 7.143 21 N -0.609 5.609 22 H 0.411 0.589 23 H 0.282 0.718 24 H 0.150 0.850 25 H 0.133 0.867 26 H 0.180 0.820 27 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.827 -12.800 -1.135 13.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.189 4.189 3 Si 0.820 3.180 4 H -0.189 1.189 5 H -0.195 1.195 6 H -0.175 1.175 7 C -0.523 4.523 8 H 0.115 0.885 9 C 0.116 3.884 10 N -0.275 5.275 11 C -0.141 4.141 12 C -0.240 4.240 13 C 0.011 3.989 14 C -0.170 4.170 15 C 0.075 3.925 16 F -0.118 7.118 17 C -0.151 4.151 18 C -0.119 4.119 19 C 0.043 3.957 20 F -0.122 7.122 21 N -0.219 5.219 22 H 0.248 0.752 23 H 0.092 0.908 24 H 0.167 0.833 25 H 0.151 0.849 26 H 0.197 0.803 27 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 3.007 -12.060 -1.061 12.474 hybrid contribution 1.041 0.211 -0.136 1.071 sum 4.048 -11.849 -1.197 12.579 Atomic orbital electron populations 1.70134 1.09125 1.29605 1.31496 1.26868 0.95631 1.04351 0.92066 0.84931 0.78832 0.75075 0.79149 1.18925 1.19517 1.17495 1.18671 0.95216 0.88426 1.50009 0.88491 1.20490 0.87876 0.85072 0.94971 1.71034 1.11757 1.16815 1.27924 1.22986 0.96602 0.90920 1.03589 1.19284 0.89092 0.88826 1.26829 1.17824 0.95754 0.89221 0.96118 1.21065 1.00851 0.94221 1.00902 1.17594 0.89967 0.91031 0.93917 1.91491 1.62374 1.86763 1.71197 1.21271 0.94628 1.01850 0.97315 1.21160 0.99715 0.91526 0.99449 1.18090 0.90787 0.92457 0.94410 1.91472 1.61488 1.88021 1.71219 1.43188 1.07665 1.06566 1.64437 0.75204 0.90806 0.83293 0.84912 0.80287 0.80413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -43.44 11.89 21.88 0.26 -43.18 15 2 C 0.03 1.64 5.49 85.35 0.47 2.11 15 3 Si 1.00 37.92 29.57 68.60 2.03 39.95 15 4 H -0.26 -9.70 7.11 99.48 0.71 -8.99 15 5 H -0.27 -9.90 7.11 99.48 0.71 -9.20 15 6 H -0.25 -8.96 7.11 99.48 0.71 -8.25 15 7 C -0.48 -25.86 9.43 23.08 0.22 -25.64 15 8 H 0.10 4.66 7.86 -2.91 -0.02 4.64 15 9 C 0.36 19.91 7.57 133.39 1.01 20.92 15 10 N -0.55 -32.72 9.34 -192.48 -1.80 -34.51 15 11 C 0.02 0.86 10.97 84.82 0.93 1.79 15 12 C -0.13 -5.93 6.62 40.80 0.27 -5.66 15 13 C 0.01 0.50 5.85 -20.04 -0.12 0.38 15 14 C -0.15 -4.71 9.77 22.63 0.22 -4.49 15 15 C 0.09 2.42 7.29 22.33 0.16 2.58 15 16 F -0.14 -3.53 17.26 44.97 0.78 -2.75 15 17 C -0.13 -2.65 10.02 22.41 0.22 -2.43 15 18 C -0.10 -2.23 10.01 22.27 0.22 -2.01 15 19 C 0.06 2.02 7.25 22.71 0.16 2.19 15 20 F -0.14 -5.22 15.88 44.97 0.71 -4.50 15 21 N -0.61 -28.68 6.31 -180.43 -1.14 -29.81 15 22 H 0.41 16.42 8.96 -92.71 -0.83 15.58 15 23 H 0.28 14.17 8.29 -92.71 -0.77 13.40 15 24 H 0.15 7.15 7.81 -2.91 -0.02 7.12 15 25 H 0.13 4.12 8.06 -2.91 -0.02 4.10 15 26 H 0.18 2.20 8.06 -2.91 -0.02 2.18 15 27 H 0.18 2.66 8.06 -2.91 -0.02 2.64 15 Total: -1.00 -66.86 258.94 5.02 -61.84 By element: Atomic # 1 Polarization: 22.82 SS G_CDS: 0.40 Total: 23.22 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: 3.78 Total: -10.25 kcal Atomic # 7 Polarization: -104.83 SS G_CDS: -2.68 Total: -107.51 kcal Atomic # 9 Polarization: -8.74 SS G_CDS: 1.49 Total: -7.25 kcal Atomic # 14 Polarization: 37.92 SS G_CDS: 2.03 Total: 39.95 kcal Total: -66.86 5.02 -61.84 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259087600.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.542 kcal (2) G-P(sol) polarization free energy of solvation -66.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds