Wall clock time and date at job start Mon Mar 30 2020 06:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30888 * 1 3 3 Si 1.86801 * 119.99988 * 2 1 4 4 H 1.48496 * 109.47185 * 274.98281 * 3 2 1 5 5 H 1.48496 * 109.47022 * 34.98489 * 3 2 1 6 6 H 1.48502 * 109.46937 * 154.98124 * 3 2 1 7 7 C 1.39868 * 119.99852 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00038 * 185.99719 * 7 2 1 9 9 C 1.41261 * 119.99917 * 5.99983 * 7 2 1 10 10 C 1.46372 * 126.48820 * 174.33077 * 9 7 2 11 11 C 1.34659 * 107.15048 * 179.70163 * 10 9 7 12 12 N 1.36204 * 108.44963 * 0.42251 * 11 10 9 13 13 C 1.39833 * 125.42510 * 179.82501 * 12 11 10 14 14 C 1.38984 * 120.04651 * 359.93235 * 13 12 11 15 15 C 1.38068 * 119.99646 * 180.23011 * 14 13 12 16 16 C 1.38489 * 120.07415 * 359.81274 * 15 14 13 17 17 F 1.35092 * 119.95569 * 180.02562 * 16 15 14 18 18 C 1.38723 * 120.08552 * 359.97438 * 16 15 14 19 19 F 1.35095 * 119.99607 * 180.02562 * 18 16 15 20 20 C 1.38265 * 120.00918 * 359.97438 * 18 16 15 21 21 N 1.33014 * 126.49009 * 354.29112 * 9 7 2 22 22 H 0.97001 * 119.99764 * 359.97438 * 1 2 3 23 23 H 1.08000 * 126.42615 * 359.97438 * 10 9 7 24 24 H 1.07991 * 125.77753 * 180.25696 * 11 10 9 25 25 H 1.08003 * 120.00353 * 0.02562 * 14 13 12 26 26 H 1.07995 * 119.96316 * 179.79423 * 15 14 13 27 27 H 1.07997 * 120.04185 * 179.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.3851 2.1072 -1.3947 5 1 1.4970 2.6199 0.8027 6 1 3.5891 1.4120 0.5921 7 6 2.0082 -1.2113 -0.0005 8 1 3.0838 -1.2139 0.0972 9 6 1.3076 -2.4312 -0.1290 10 6 1.8979 -3.7640 -0.2628 11 6 0.8805 -4.6418 -0.3509 12 7 -0.2916 -3.9506 -0.2911 13 6 -1.5695 -4.5149 -0.3542 14 6 -1.7169 -5.8901 -0.4906 15 6 -2.9791 -6.4457 -0.5577 16 6 -4.0992 -5.6345 -0.4853 17 9 -5.3330 -6.1807 -0.5506 18 6 -3.9558 -4.2619 -0.3447 19 9 -5.0497 -3.4723 -0.2738 20 6 -2.6935 -3.7019 -0.2762 21 7 -0.0132 -2.5864 -0.1505 22 1 -0.4850 0.8401 0.0004 23 1 2.9516 -3.9996 -0.2823 24 1 0.9775 -5.7123 -0.4544 25 1 -0.8442 -6.5239 -0.5474 26 1 -3.0930 -7.5141 -0.6670 27 1 -2.5812 -2.6333 -0.1672 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259141081.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:00 Heat of formation + Delta-G solvation = 6.084902 kcal Electronic energy + Delta-G solvation = -17027.924199 eV Core-core repulsion = 13809.298436 eV Total energy + Delta-G solvation = -3218.625764 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 250.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.11037 -48.18789 -39.83316 -37.91164 -33.78779 -31.87510 -30.66983 -28.77072 -28.15097 -25.83267 -22.94223 -22.43679 -20.07035 -19.46588 -17.88642 -17.01342 -16.93394 -16.17435 -15.96897 -15.66808 -14.86621 -14.63125 -14.15246 -13.84558 -13.70580 -13.28310 -12.89440 -12.66723 -12.44367 -11.89427 -11.68758 -11.25394 -11.12343 -11.02703 -10.62572 -10.14951 -9.71080 -8.92470 -8.72020 -8.68069 -7.87435 -7.13779 -6.63136 -4.56661 1.12104 1.30648 2.96370 3.05870 3.10695 3.13905 3.56186 3.96723 3.97759 4.11789 4.17726 4.65680 4.82022 5.14256 5.35689 5.37720 5.56711 5.80177 5.92671 6.15356 6.18504 6.38923 6.61068 6.78655 6.87454 7.06495 7.13025 7.46928 8.12922 8.34017 8.63947 8.87592 9.58524 10.32957 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.032534 B = 0.005796 C = 0.004930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.423135 B = 4829.872030 C = 5677.990591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.758 5.758 2 C 0.069 3.931 3 Si 0.915 3.085 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.428 4.428 8 H 0.088 0.912 9 C 0.211 3.789 10 C -0.257 4.257 11 C 0.012 3.988 12 N -0.369 5.369 13 C 0.241 3.759 14 C -0.170 4.170 15 C -0.088 4.088 16 C 0.003 3.997 17 F -0.140 7.140 18 C 0.102 3.898 19 F -0.131 7.131 20 C -0.156 4.156 21 N -0.333 5.333 22 H 0.277 0.723 23 H 0.133 0.867 24 H 0.150 0.850 25 H 0.137 0.863 26 H 0.143 0.857 27 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.433 -8.253 -0.891 8.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.384 5.384 2 C -0.153 4.153 3 Si 0.739 3.261 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.468 4.468 8 H 0.106 0.894 9 C 0.057 3.943 10 C -0.286 4.286 11 C -0.120 4.120 12 N -0.141 5.141 13 C 0.139 3.861 14 C -0.192 4.192 15 C -0.108 4.108 16 C -0.019 4.019 17 F -0.119 7.119 18 C 0.082 3.918 19 F -0.110 7.110 20 C -0.177 4.177 21 N -0.160 5.160 22 H 0.088 0.912 23 H 0.151 0.849 24 H 0.167 0.833 25 H 0.154 0.846 26 H 0.160 0.840 27 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -3.753 -7.626 -0.839 8.540 hybrid contribution 0.786 0.298 -0.069 0.843 sum -2.967 -7.328 -0.908 7.958 Atomic orbital electron populations 1.69926 1.07136 1.28523 1.32831 1.25910 0.94916 1.01073 0.93439 0.86189 0.80254 0.80711 0.78912 1.19618 1.20296 1.18601 1.18736 0.94340 0.87852 1.45829 0.89439 1.20837 0.89679 0.91879 0.91942 1.22873 0.97902 0.93705 1.14127 1.22146 0.86696 0.97392 1.05809 1.46414 1.01055 1.08065 1.58542 1.17219 0.83757 0.90740 0.94414 1.20594 0.97569 0.92837 1.08174 1.20618 0.90094 0.99882 1.00162 1.17424 0.80837 0.89913 1.13707 1.91451 1.39925 1.85814 1.94747 1.17382 0.83611 0.86603 1.04253 1.91496 1.51942 1.73760 1.93767 1.20760 0.88251 1.02908 1.05831 1.79105 1.14407 0.84166 1.38304 0.91249 0.84898 0.83285 0.84553 0.83959 0.82041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -20.32 11.99 55.54 0.67 -19.66 15 2 C 0.07 1.73 5.49 -17.34 -0.10 1.64 15 3 Si 0.91 18.59 29.56 -169.99 -5.03 13.57 15 4 H -0.27 -5.46 7.11 56.52 0.40 -5.06 15 5 H -0.28 -5.59 7.11 56.52 0.40 -5.19 15 6 H -0.26 -5.16 7.11 56.52 0.40 -4.76 15 7 C -0.43 -11.15 9.42 -37.82 -0.36 -11.50 15 8 H 0.09 2.10 7.85 -52.49 -0.41 1.69 15 9 C 0.21 5.55 6.92 -82.94 -0.57 4.98 15 10 C -0.26 -5.64 11.02 -37.58 -0.41 -6.06 15 11 C 0.01 0.24 10.73 -16.88 -0.18 0.06 15 12 N -0.37 -8.33 3.79 -10.65 -0.04 -8.37 15 13 C 0.24 4.69 6.68 -83.67 -0.56 4.14 15 14 C -0.17 -2.57 9.44 -39.37 -0.37 -2.94 15 15 C -0.09 -1.21 10.02 -39.55 -0.40 -1.60 15 16 C 0.00 0.04 7.31 -39.31 -0.29 -0.24 15 17 F -0.14 -2.24 17.18 2.25 0.04 -2.20 15 18 C 0.10 1.84 7.30 -39.39 -0.29 1.55 15 19 F -0.13 -2.39 17.18 2.25 0.04 -2.35 15 20 C -0.16 -3.09 9.62 -39.31 -0.38 -3.47 15 21 N -0.33 -8.96 10.10 33.25 0.34 -8.62 15 22 H 0.28 6.80 8.30 -40.82 -0.34 6.46 15 23 H 0.13 2.50 8.06 -52.49 -0.42 2.08 15 24 H 0.15 2.23 6.96 -52.49 -0.37 1.87 15 25 H 0.14 1.71 6.66 -52.48 -0.35 1.36 15 26 H 0.14 1.46 8.06 -52.49 -0.42 1.04 15 27 H 0.16 3.60 7.66 -52.49 -0.40 3.19 15 LS Contribution 258.60 15.07 3.90 3.90 Total: -1.00 -29.02 258.60 -5.50 -34.51 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -1.51 Total: 2.68 kcal Atomic # 6 Polarization: -9.56 SS G_CDS: -3.90 Total: -13.46 kcal Atomic # 7 Polarization: -37.61 SS G_CDS: 0.96 Total: -36.65 kcal Atomic # 9 Polarization: -4.63 SS G_CDS: 0.08 Total: -4.55 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.57 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -29.02 -5.50 -34.51 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259141081.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.600 kcal (2) G-P(sol) polarization free energy of solvation -29.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds