Wall clock time and date at job start Mon Mar 30 2020 05:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30027 * 126.86105 * 2 1 4 4 O 1.20849 * 111.95064 * 179.97438 * 3 2 1 5 5 C 1.34013 * 111.83221 * 359.72164 * 4 3 2 6 6 C 1.50704 * 126.87157 * 180.29764 * 5 4 3 7 7 C 1.36590 * 106.25467 * 0.44362 * 5 4 3 8 8 C 1.48482 * 128.15839 * 179.85924 * 7 5 4 9 9 C 1.37505 * 120.87062 * 133.02953 * 8 7 5 10 10 C 1.39554 * 113.97820 * 179.74183 * 9 8 7 11 11 C 1.40164 * 127.74549 * 180.19817 * 10 9 8 12 12 H 1.07995 * 120.00089 * 359.97438 * 11 10 9 13 13 C 1.40175 * 119.99768 * 179.97438 * 11 10 9 14 14 N 1.30764 * 120.00031 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00002 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.46809 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.47028 * 119.99921 * 15 13 11 18 18 H 1.48497 * 109.47463 * 240.00036 * 15 13 11 19 19 S 1.77219 * 104.50514 * 0.23218 * 10 9 8 20 20 N 1.31194 * 120.86757 * 313.23873 * 8 7 5 21 21 H 1.08995 * 109.47187 * 270.00480 * 1 2 3 22 22 H 1.09005 * 109.47214 * 30.00390 * 1 2 3 23 23 H 1.09004 * 109.46919 * 150.00113 * 1 2 3 24 24 H 1.09001 * 109.46953 * 265.02085 * 6 5 4 25 25 H 1.09001 * 109.47227 * 25.01370 * 6 5 4 26 26 H 1.08994 * 109.47423 * 145.01522 * 6 5 4 27 27 H 1.08006 * 123.00697 * 0.02562 * 9 8 7 28 28 H 0.96999 * 119.99945 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2870 1.0403 0.0000 4 8 3.4548 0.7294 0.0005 5 6 3.6163 -0.6010 0.0070 6 6 4.9221 -1.3533 0.0158 7 6 2.3607 -1.1386 0.0006 8 6 1.9769 -2.5729 0.0009 9 6 1.0115 -3.0448 0.8589 10 6 0.7604 -4.4118 0.7335 11 6 -0.1596 -5.1849 1.4550 12 1 -0.7762 -4.7236 2.2121 13 6 -0.2793 -6.5569 1.1936 14 7 0.4670 -7.1153 0.2765 15 14 -1.5048 -7.5875 2.1556 16 1 -2.2223 -6.7240 3.1277 17 1 -2.4831 -8.1959 1.2186 18 1 -0.7839 -8.6615 2.8848 19 16 1.8665 -4.9511 -0.5418 20 7 2.5529 -3.4240 -0.8146 21 1 -0.3633 0.0001 1.0276 22 1 -0.3634 0.8900 -0.5139 23 1 -0.3633 -0.8900 -0.5138 24 1 5.1967 -1.6164 -1.0057 25 1 5.7000 -0.7259 0.4509 26 1 4.8141 -2.2616 0.6085 27 1 0.4908 -2.4130 1.5634 28 1 0.3844 -8.0648 0.0959 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259324948.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:22 Heat of formation + Delta-G solvation = 61.048245 kcal Electronic energy + Delta-G solvation = -15447.802427 eV Core-core repulsion = 12785.400439 eV Total energy + Delta-G solvation = -2662.401988 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -44.36492 -36.98924 -34.53575 -33.84289 -32.73071 -29.91228 -28.22387 -27.49769 -26.11453 -23.87817 -21.08800 -19.51880 -18.63471 -17.78563 -17.18621 -16.16212 -15.35074 -15.28817 -14.14843 -13.72289 -13.13337 -13.02412 -12.72402 -12.64052 -12.32431 -12.19156 -12.10326 -11.87368 -11.57051 -11.45321 -11.09627 -10.56675 -10.50735 -9.98203 -9.45969 -9.15921 -8.78976 -8.64802 -8.08395 -7.22086 -6.91233 -4.92385 1.86150 2.33275 2.62962 2.82684 2.90024 3.03540 3.39624 3.50408 3.57190 3.88183 4.01640 4.66591 4.79205 4.97250 5.56290 5.64353 5.81575 5.83881 5.88608 6.03015 6.14620 6.24379 6.43342 6.58401 6.65395 6.97774 7.24017 7.37546 7.76923 8.12077 8.22918 8.49954 8.74059 9.61585 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.036319 B = 0.006281 C = 0.005638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.762281 B = 4457.127375 C = 4964.770425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.036 3.964 3 N -0.380 5.380 4 O 0.086 5.914 5 C -0.026 4.026 6 C -0.058 4.058 7 C -0.110 4.110 8 C 0.210 3.790 9 C -0.391 4.391 10 C 0.049 3.951 11 C -0.365 4.365 12 H 0.100 0.900 13 C 0.054 3.946 14 N -0.760 5.760 15 Si 0.937 3.063 16 H -0.255 1.255 17 H -0.267 1.267 18 H -0.267 1.267 19 S 0.178 5.822 20 N -0.595 5.595 21 H 0.078 0.922 22 H 0.068 0.932 23 H 0.086 0.914 24 H 0.086 0.914 25 H 0.072 0.928 26 H 0.090 0.910 27 H 0.115 0.885 28 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.531 2.986 1.728 3.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.124 4.124 3 N -0.088 5.088 4 O 0.024 5.976 5 C -0.091 4.091 6 C -0.115 4.115 7 C -0.119 4.119 8 C 0.043 3.957 9 C -0.425 4.425 10 C -0.078 4.078 11 C -0.403 4.403 12 H 0.118 0.882 13 C -0.171 4.171 14 N -0.387 5.387 15 Si 0.760 3.240 16 H -0.178 1.178 17 H -0.192 1.192 18 H -0.192 1.192 19 S 0.329 5.671 20 N -0.420 5.420 21 H 0.097 0.903 22 H 0.087 0.913 23 H 0.105 0.895 24 H 0.105 0.895 25 H 0.091 0.909 26 H 0.108 0.892 27 H 0.133 0.867 28 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.626 2.999 0.046 3.412 hybrid contribution -1.522 -0.214 1.586 2.209 sum 0.104 2.785 1.632 3.230 Atomic orbital electron populations 1.20136 0.85997 1.03391 1.03228 1.23528 0.98807 0.88128 1.01963 1.73608 0.89363 1.24026 1.21852 1.84662 1.21416 1.22827 1.68738 1.24469 0.98361 0.82991 1.03329 1.20181 0.88946 0.98290 1.04128 1.19438 0.91041 0.93612 1.07797 1.18053 0.94598 0.88900 0.94106 1.20539 1.13167 0.94877 1.13936 1.22881 0.95506 0.94221 0.95178 1.19230 1.14296 0.91969 1.14781 0.88211 1.26326 0.96789 0.98933 0.95036 1.69121 1.31242 1.14640 1.23696 0.85740 0.79381 0.79170 0.79743 1.17824 1.19182 1.19179 1.85064 1.34166 1.11284 1.36624 1.76509 1.32441 1.02364 1.30718 0.90305 0.91279 0.89545 0.89509 0.90871 0.89174 0.86676 0.88767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.15 10.05 36.01 0.36 -0.78 15 2 C 0.04 0.70 7.35 -81.79 -0.60 0.10 15 3 N -0.38 -7.35 12.04 33.67 0.41 -6.94 15 4 O 0.09 1.59 11.18 17.27 0.19 1.78 15 5 C -0.03 -0.50 7.54 -34.90 -0.26 -0.76 15 6 C -0.06 -0.89 10.30 36.01 0.37 -0.52 15 7 C -0.11 -2.36 5.99 -104.71 -0.63 -2.99 15 8 C 0.21 5.07 6.35 -84.18 -0.53 4.54 15 9 C -0.39 -9.59 9.71 -39.36 -0.38 -9.97 15 10 C 0.05 1.24 6.39 -38.37 -0.25 1.00 15 11 C -0.36 -8.70 9.39 -38.13 -0.36 -9.06 15 12 H 0.10 2.22 7.85 -52.49 -0.41 1.81 15 13 C 0.05 1.18 5.50 -17.28 -0.10 1.09 15 14 N -0.76 -17.46 10.95 55.56 0.61 -16.85 15 15 Si 0.94 16.23 29.56 -169.99 -5.03 11.21 15 16 H -0.25 -4.35 7.11 56.52 0.40 -3.94 15 17 H -0.27 -4.56 7.11 56.52 0.40 -4.16 15 18 H -0.27 -4.56 7.11 56.52 0.40 -4.16 15 19 S 0.18 4.54 21.25 -107.50 -2.28 2.26 15 20 N -0.60 -15.06 12.03 32.40 0.39 -14.67 15 21 H 0.08 1.18 8.14 -51.93 -0.42 0.75 15 22 H 0.07 0.98 8.14 -51.93 -0.42 0.56 15 23 H 0.09 1.49 8.14 -51.93 -0.42 1.07 15 24 H 0.09 1.28 8.14 -51.93 -0.42 0.86 15 25 H 0.07 0.87 8.14 -51.93 -0.42 0.45 15 26 H 0.09 1.50 8.14 -51.93 -0.42 1.07 15 27 H 0.12 2.66 8.06 -52.48 -0.42 2.24 15 28 H 0.30 6.09 8.29 -40.82 -0.34 5.75 15 LS Contribution 269.95 15.07 4.07 4.07 Total: -1.00 -27.68 269.95 -6.52 -34.20 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -2.51 Total: 2.30 kcal Atomic # 6 Polarization: -14.99 SS G_CDS: -2.37 Total: -17.37 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: 1.40 Total: -38.46 kcal Atomic # 8 Polarization: 1.59 SS G_CDS: 0.19 Total: 1.78 kcal Atomic # 14 Polarization: 16.23 SS G_CDS: -5.03 Total: 11.21 kcal Atomic # 16 Polarization: 4.54 SS G_CDS: -2.28 Total: 2.26 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -27.68 -6.52 -34.20 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259324948.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.252 kcal (2) G-P(sol) polarization free energy of solvation -27.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds