Wall clock time and date at job start Mon Mar 30 2020 05:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30027 * 126.86105 * 2 1 4 4 O 1.20849 * 111.95064 * 179.97438 * 3 2 1 5 5 C 1.34013 * 111.83221 * 359.72164 * 4 3 2 6 6 C 1.50704 * 126.87157 * 180.29764 * 5 4 3 7 7 C 1.36590 * 106.25467 * 0.44362 * 5 4 3 8 8 C 1.48482 * 128.15839 * 179.85924 * 7 5 4 9 9 C 1.37505 * 120.87062 * 133.02953 * 8 7 5 10 10 C 1.39554 * 113.97820 * 179.74183 * 9 8 7 11 11 C 1.40164 * 127.74549 * 180.19817 * 10 9 8 12 12 H 1.07995 * 120.00089 * 359.97438 * 11 10 9 13 13 C 1.40175 * 119.99768 * 179.97438 * 11 10 9 14 14 N 1.30764 * 120.00031 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00002 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.46809 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.47028 * 119.99921 * 15 13 11 18 18 H 1.48497 * 109.47463 * 240.00036 * 15 13 11 19 19 S 1.77219 * 104.50514 * 0.23218 * 10 9 8 20 20 N 1.31194 * 120.86757 * 313.23873 * 8 7 5 21 21 H 1.08995 * 109.47187 * 270.00480 * 1 2 3 22 22 H 1.09005 * 109.47214 * 30.00390 * 1 2 3 23 23 H 1.09004 * 109.46919 * 150.00113 * 1 2 3 24 24 H 1.09001 * 109.46953 * 265.02085 * 6 5 4 25 25 H 1.09001 * 109.47227 * 25.01370 * 6 5 4 26 26 H 1.08994 * 109.47423 * 145.01522 * 6 5 4 27 27 H 1.08006 * 123.00697 * 0.02562 * 9 8 7 28 28 H 0.96999 * 119.99945 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2870 1.0403 0.0000 4 8 3.4548 0.7294 0.0005 5 6 3.6163 -0.6010 0.0070 6 6 4.9221 -1.3533 0.0158 7 6 2.3607 -1.1386 0.0006 8 6 1.9769 -2.5729 0.0009 9 6 1.0115 -3.0448 0.8589 10 6 0.7604 -4.4118 0.7335 11 6 -0.1596 -5.1849 1.4550 12 1 -0.7762 -4.7236 2.2121 13 6 -0.2793 -6.5569 1.1936 14 7 0.4670 -7.1153 0.2765 15 14 -1.5048 -7.5875 2.1556 16 1 -2.2223 -6.7240 3.1277 17 1 -2.4831 -8.1959 1.2186 18 1 -0.7839 -8.6615 2.8848 19 16 1.8665 -4.9511 -0.5418 20 7 2.5529 -3.4240 -0.8146 21 1 -0.3633 0.0001 1.0276 22 1 -0.3634 0.8900 -0.5139 23 1 -0.3633 -0.8900 -0.5138 24 1 5.1967 -1.6164 -1.0057 25 1 5.7000 -0.7259 0.4509 26 1 4.8141 -2.2616 0.6085 27 1 0.4908 -2.4130 1.5634 28 1 0.3844 -8.0648 0.0959 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259324948.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:21 Heat of formation + Delta-G solvation = 45.768201 kcal Electronic energy + Delta-G solvation = -15448.465019 eV Core-core repulsion = 12785.400439 eV Total energy + Delta-G solvation = -2663.064580 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -45.88008 -38.77733 -36.27697 -35.38973 -34.21513 -31.74646 -29.62252 -28.94248 -27.90791 -25.53544 -22.77005 -21.02456 -20.34511 -19.64875 -18.69928 -17.70019 -17.18799 -16.95972 -15.72862 -15.19979 -14.65938 -14.34012 -14.20385 -14.05039 -13.98117 -13.84343 -13.47384 -13.33469 -13.19156 -13.03265 -12.81617 -12.04206 -11.94390 -11.58382 -11.14988 -10.87795 -10.62308 -10.27812 -9.94955 -8.94326 -8.82023 -6.80293 0.29832 0.63555 1.06799 1.39628 1.52178 1.56359 1.60401 1.84521 2.11069 2.19988 2.26905 2.96995 3.21166 3.55216 4.13059 4.17611 4.37374 4.61727 4.62536 4.66618 4.73862 4.87501 4.88558 5.11809 5.12608 5.17828 5.40168 5.55756 5.94318 6.28266 6.39680 6.65149 7.22998 7.93649 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.036319 B = 0.006281 C = 0.005638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.762281 B = 4457.127375 C = 4964.770425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.034 3.966 3 N -0.386 5.386 4 O 0.093 5.907 5 C -0.009 4.009 6 C -0.057 4.057 7 C -0.156 4.156 8 C 0.216 3.784 9 C -0.411 4.411 10 C 0.025 3.975 11 C -0.376 4.376 12 H 0.113 0.887 13 C 0.016 3.984 14 N -0.781 5.781 15 Si 1.016 2.984 16 H -0.248 1.248 17 H -0.260 1.260 18 H -0.259 1.259 19 S 0.139 5.861 20 N -0.616 5.616 21 H 0.093 0.907 22 H 0.092 0.908 23 H 0.072 0.928 24 H 0.094 0.906 25 H 0.113 0.887 26 H 0.075 0.925 27 H 0.122 0.878 28 H 0.313 0.687 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.186 2.863 2.757 3.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.126 4.126 3 N -0.095 5.095 4 O 0.032 5.968 5 C -0.074 4.074 6 C -0.114 4.114 7 C -0.164 4.164 8 C 0.050 3.950 9 C -0.444 4.444 10 C -0.101 4.101 11 C -0.414 4.414 12 H 0.131 0.869 13 C -0.206 4.206 14 N -0.407 5.407 15 Si 0.833 3.167 16 H -0.171 1.171 17 H -0.184 1.184 18 H -0.184 1.184 19 S 0.288 5.712 20 N -0.441 5.441 21 H 0.112 0.888 22 H 0.111 0.889 23 H 0.091 0.909 24 H 0.112 0.888 25 H 0.132 0.868 26 H 0.094 0.906 27 H 0.140 0.860 28 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.939 2.909 1.059 3.235 hybrid contribution -1.292 -0.205 1.276 1.828 sum -0.353 2.704 2.335 3.590 Atomic orbital electron populations 1.20214 0.84179 1.03823 1.04317 1.23919 1.00120 0.87456 1.01138 1.73590 0.89535 1.23876 1.22490 1.84661 1.21228 1.22504 1.68415 1.24988 0.98888 0.83024 1.00504 1.20325 0.88429 0.97997 1.04639 1.19524 0.92882 0.92861 1.11176 1.18288 0.93709 0.90030 0.92975 1.20663 1.14161 0.94788 1.14827 1.23247 0.96213 0.94973 0.95621 1.19729 1.13838 0.93189 1.14637 0.86883 1.27394 0.98311 0.99308 0.95595 1.69161 1.31727 1.15821 1.24038 0.84613 0.76634 0.77224 0.78230 1.17068 1.18380 1.18363 1.84947 1.35589 1.12611 1.38046 1.76536 1.33524 1.02174 1.31885 0.88830 0.88947 0.90899 0.88801 0.86817 0.90639 0.85992 0.87427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.17 10.05 71.24 0.72 -1.45 15 2 C 0.03 1.31 7.35 43.84 0.32 1.63 15 3 N -0.39 -14.44 12.04 -48.52 -0.58 -15.02 15 4 O 0.09 3.31 11.18 71.98 0.80 4.11 15 5 C -0.01 -0.32 7.54 25.30 0.19 -0.13 15 6 C -0.06 -1.66 10.30 71.24 0.73 -0.93 15 7 C -0.16 -6.67 5.99 -19.92 -0.12 -6.79 15 8 C 0.22 10.61 6.35 41.80 0.27 10.87 15 9 C -0.41 -20.53 9.71 22.41 0.22 -20.31 15 10 C 0.03 1.32 6.39 23.06 0.15 1.47 15 11 C -0.38 -17.84 9.39 23.21 0.22 -17.62 15 12 H 0.11 4.92 7.85 -2.91 -0.02 4.90 15 13 C 0.02 0.70 5.50 85.32 0.47 1.17 15 14 N -0.78 -35.54 10.95 21.87 0.24 -35.30 15 15 Si 1.02 31.39 29.56 68.60 2.03 33.42 15 16 H -0.25 -7.35 7.11 99.48 0.71 -6.64 15 17 H -0.26 -7.71 7.11 99.48 0.71 -7.01 15 18 H -0.26 -7.70 7.11 99.48 0.71 -7.00 15 19 S 0.14 7.27 21.25 -56.49 -1.20 6.07 15 20 N -0.62 -31.96 12.03 -51.39 -0.62 -32.57 15 21 H 0.09 2.68 8.14 -2.39 -0.02 2.66 15 22 H 0.09 2.47 8.14 -2.38 -0.02 2.45 15 23 H 0.07 2.52 8.14 -2.39 -0.02 2.50 15 24 H 0.09 2.66 8.14 -2.39 -0.02 2.64 15 25 H 0.11 2.38 8.14 -2.39 -0.02 2.36 15 26 H 0.07 2.48 8.14 -2.39 -0.02 2.46 15 27 H 0.12 5.73 8.06 -2.91 -0.02 5.71 15 28 H 0.31 12.41 8.29 -92.71 -0.77 11.64 15 Total: -1.00 -59.71 269.95 5.02 -54.69 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: 1.19 Total: 16.68 kcal Atomic # 6 Polarization: -35.24 SS G_CDS: 3.16 Total: -32.08 kcal Atomic # 7 Polarization: -81.93 SS G_CDS: -0.96 Total: -82.89 kcal Atomic # 8 Polarization: 3.31 SS G_CDS: 0.80 Total: 4.11 kcal Atomic # 14 Polarization: 31.39 SS G_CDS: 2.03 Total: 33.42 kcal Atomic # 16 Polarization: 7.27 SS G_CDS: -1.20 Total: 6.07 kcal Total: -59.71 5.02 -54.69 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259324948.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.459 kcal (2) G-P(sol) polarization free energy of solvation -59.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds