Wall clock time and date at job start Mon Mar 30 2020 06:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 120.00266 * 2 1 4 4 H 1.48503 * 109.47293 * 240.00043 * 3 2 1 5 5 H 1.48498 * 109.47207 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47199 * 120.00016 * 3 2 1 7 7 C 1.37878 * 119.99616 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99820 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00364 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47282 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47282 * 180.02562 * 10 9 7 12 12 N 1.30112 * 124.95295 * 304.98520 * 11 10 9 13 13 C 1.35783 * 109.65122 * 180.02562 * 12 11 10 14 14 C 1.39752 * 133.55815 * 180.02562 * 13 12 11 15 15 C 1.37682 * 119.76378 * 179.97438 * 14 13 12 16 16 Cl 1.73603 * 119.75424 * 179.97438 * 15 14 13 17 17 C 1.38893 * 120.49884 * 0.02562 * 15 14 13 18 18 C 1.37825 * 120.44498 * 0.02562 * 17 15 14 19 19 C 1.38812 * 119.84356 * 359.97438 * 18 17 15 20 20 N 1.36028 * 124.94952 * 124.99925 * 11 10 9 21 21 H 0.96996 * 126.34895 * 359.97438 * 20 11 10 22 22 H 0.97004 * 120.00032 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46851 * 60.00448 * 9 7 2 24 24 H 1.08997 * 109.47312 * 300.00383 * 9 7 2 25 25 H 1.08999 * 109.47148 * 60.00456 * 10 9 7 26 26 H 1.08997 * 109.47376 * 300.00486 * 10 9 7 27 27 H 1.08003 * 120.12149 * 359.97438 * 14 13 12 28 28 H 1.07997 * 119.78110 * 179.97438 * 17 15 14 29 29 H 1.07993 * 120.07338 * 179.69905 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0017 10 6 2.2451 -3.6621 0.0015 11 6 1.4916 -4.9672 0.0020 12 7 0.5897 -5.3069 0.8762 13 6 0.1131 -6.5441 0.5833 14 6 -0.8437 -7.3726 1.1758 15 6 -1.1129 -8.6067 0.6277 16 17 -2.3010 -9.6359 1.3644 17 6 -0.4402 -9.0347 -0.5095 18 6 0.5069 -8.2299 -1.1052 19 6 0.7912 -6.9827 -0.5663 20 7 1.6554 -5.9619 -0.9113 21 1 2.2667 -5.9561 -1.6643 22 1 -0.4850 0.8401 -0.0004 23 1 0.6240 -2.5575 -0.8881 24 1 0.6246 -2.5563 0.8919 25 1 2.8724 -3.6041 0.8910 26 1 2.8711 -3.6048 -0.8890 27 1 -1.3702 -7.0462 2.0606 28 1 -0.6602 -10.0051 -0.9295 29 1 1.0298 -8.5708 -1.9865 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259452827.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:06 Heat of formation + Delta-G solvation = 44.254605 kcal Electronic energy + Delta-G solvation = -14877.196391 eV Core-core repulsion = 12212.022470 eV Total energy + Delta-G solvation = -2665.173921 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.96671 -37.72540 -36.10191 -33.87652 -33.00325 -31.57996 -29.85960 -28.60884 -25.63368 -22.64245 -22.22095 -21.64672 -20.01147 -17.79284 -17.25487 -16.42160 -15.53721 -15.17591 -14.62215 -14.47984 -14.03484 -13.35078 -13.01041 -12.86754 -12.52876 -12.23571 -11.82397 -11.32619 -11.03924 -10.97072 -10.88252 -10.65801 -10.56537 -10.08880 -9.76245 -9.59410 -9.22726 -8.39599 -8.19095 -8.01278 -6.03782 -4.08500 0.94365 1.34583 2.11442 2.97047 3.05399 3.30872 3.36157 3.37664 3.82500 4.37625 4.42578 4.71491 4.97824 5.23993 5.28156 5.31927 5.47047 5.54730 5.83333 6.01643 6.20417 6.26729 6.34743 6.47676 6.71359 6.77374 7.49076 7.59180 7.74102 7.95135 8.17967 8.30010 8.97820 9.55657 11.07108 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.046609 B = 0.004017 C = 0.003790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.592227 B = 6969.056668 C = 7385.641497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.895 3.105 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.528 4.528 8 H 0.057 0.943 9 C 0.033 3.967 10 C -0.043 4.043 11 C 0.323 3.677 12 N -0.489 5.489 13 C 0.066 3.934 14 C -0.057 4.057 15 C -0.045 4.045 16 Cl -0.075 7.075 17 C -0.107 4.107 18 C -0.095 4.095 19 C 0.039 3.961 20 N -0.603 5.603 21 H 0.422 0.578 22 H 0.262 0.738 23 H 0.016 0.984 24 H 0.035 0.965 25 H 0.089 0.911 26 H 0.072 0.928 27 H 0.139 0.861 28 H 0.136 0.864 29 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.105 -17.810 -2.289 17.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.567 4.567 8 H 0.075 0.925 9 C -0.005 4.005 10 C -0.083 4.083 11 C 0.057 3.943 12 N -0.209 5.209 13 C -0.054 4.054 14 C -0.077 4.077 15 C -0.074 4.074 16 Cl -0.047 7.047 17 C -0.127 4.127 18 C -0.116 4.116 19 C -0.072 4.072 20 N -0.213 5.213 21 H 0.261 0.739 22 H 0.072 0.928 23 H 0.034 0.966 24 H 0.054 0.946 25 H 0.107 0.893 26 H 0.090 0.910 27 H 0.157 0.843 28 H 0.154 0.846 29 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.523 -17.302 -1.486 17.373 hybrid contribution 0.836 0.360 -1.065 1.401 sum 1.359 -16.942 -2.552 17.187 Atomic orbital electron populations 1.69967 1.06083 1.26899 1.49854 1.25011 0.94846 0.99303 0.95114 0.86619 0.79534 0.82996 0.78605 1.20269 1.21261 1.20124 1.21111 0.92965 0.90710 1.51881 0.92464 1.19055 0.93390 0.89421 0.98631 1.20669 0.98307 0.86606 1.02673 1.24611 0.93790 0.91556 0.84313 1.70595 1.12476 1.11098 1.26712 1.18986 0.98649 0.93059 0.94671 1.20012 0.96521 0.91040 1.00158 1.20345 0.96717 0.93009 0.97366 1.98348 1.56577 1.67196 1.82533 1.20591 0.96768 1.00264 0.95118 1.19783 0.99821 0.91169 1.00835 1.18960 0.96737 0.92241 0.99269 1.43353 1.35652 1.14633 1.27705 0.73913 0.92782 0.96560 0.94637 0.89262 0.90964 0.84333 0.84614 0.85330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.54 13.29 55.43 0.74 -25.80 15 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 15 3 Si 0.89 21.12 29.54 -169.99 -5.02 16.09 15 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 15 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 15 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 15 7 C -0.53 -14.34 9.11 -34.44 -0.31 -14.65 15 8 H 0.06 1.46 7.74 -52.48 -0.41 1.06 15 9 C 0.03 0.83 4.91 -27.89 -0.14 0.69 15 10 C -0.04 -0.83 5.78 -27.89 -0.16 -0.99 15 11 C 0.32 5.91 7.37 -154.83 -1.14 4.77 15 12 N -0.49 -9.94 11.21 -8.24 -0.09 -10.04 15 13 C 0.07 1.16 7.23 -84.70 -0.61 0.55 15 14 C -0.06 -0.87 9.86 -39.22 -0.39 -1.26 15 15 C -0.05 -0.59 6.31 -39.54 -0.25 -0.84 15 16 Cl -0.08 -0.86 28.94 -51.86 -1.50 -2.36 15 17 C -0.11 -1.21 9.80 -39.49 -0.39 -1.60 15 18 C -0.09 -1.11 10.06 -39.52 -0.40 -1.51 15 19 C 0.04 0.58 7.30 -83.97 -0.61 -0.03 15 20 N -0.60 -8.73 6.23 -8.00 -0.05 -8.78 15 21 H 0.42 4.48 8.96 -40.82 -0.37 4.12 15 22 H 0.26 7.41 8.31 -40.82 -0.34 7.07 15 23 H 0.02 0.44 8.14 -51.93 -0.42 0.01 15 24 H 0.04 0.99 8.14 -51.93 -0.42 0.57 15 25 H 0.09 1.65 8.14 -51.93 -0.42 1.22 15 26 H 0.07 1.19 8.14 -51.93 -0.42 0.77 15 27 H 0.14 2.01 8.06 -52.48 -0.42 1.59 15 28 H 0.14 1.17 8.06 -52.49 -0.42 0.74 15 29 H 0.13 1.10 8.06 -52.49 -0.42 0.68 15 LS Contribution 275.48 15.07 4.15 4.15 Total: -1.00 -31.38 275.48 -9.14 -40.52 By element: Atomic # 1 Polarization: 2.38 SS G_CDS: -2.87 Total: -0.48 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: -4.50 Total: -13.30 kcal Atomic # 7 Polarization: -45.22 SS G_CDS: 0.59 Total: -44.62 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -1.50 Total: -2.36 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -31.38 -9.14 -40.52 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259452827.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.773 kcal (2) G-P(sol) polarization free energy of solvation -31.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds