Wall clock time and date at job start Mon Mar 30 2020 06:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 120.00266 * 2 1 4 4 H 1.48503 * 109.47293 * 240.00043 * 3 2 1 5 5 H 1.48498 * 109.47207 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47199 * 120.00016 * 3 2 1 7 7 C 1.37878 * 119.99616 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99820 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00364 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47282 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47282 * 180.02562 * 10 9 7 12 12 N 1.30112 * 124.95295 * 304.98520 * 11 10 9 13 13 C 1.35783 * 109.65122 * 180.02562 * 12 11 10 14 14 C 1.39752 * 133.55815 * 180.02562 * 13 12 11 15 15 C 1.37682 * 119.76378 * 179.97438 * 14 13 12 16 16 Cl 1.73603 * 119.75424 * 179.97438 * 15 14 13 17 17 C 1.38893 * 120.49884 * 0.02562 * 15 14 13 18 18 C 1.37825 * 120.44498 * 0.02562 * 17 15 14 19 19 C 1.38812 * 119.84356 * 359.97438 * 18 17 15 20 20 N 1.36028 * 124.94952 * 124.99925 * 11 10 9 21 21 H 0.96996 * 126.34895 * 359.97438 * 20 11 10 22 22 H 0.97004 * 120.00032 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46851 * 60.00448 * 9 7 2 24 24 H 1.08997 * 109.47312 * 300.00383 * 9 7 2 25 25 H 1.08999 * 109.47148 * 60.00456 * 10 9 7 26 26 H 1.08997 * 109.47376 * 300.00486 * 10 9 7 27 27 H 1.08003 * 120.12149 * 359.97438 * 14 13 12 28 28 H 1.07997 * 119.78110 * 179.97438 * 17 15 14 29 29 H 1.07993 * 120.07338 * 179.69905 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0017 10 6 2.2451 -3.6621 0.0015 11 6 1.4916 -4.9672 0.0020 12 7 0.5897 -5.3069 0.8762 13 6 0.1131 -6.5441 0.5833 14 6 -0.8437 -7.3726 1.1758 15 6 -1.1129 -8.6067 0.6277 16 17 -2.3010 -9.6359 1.3644 17 6 -0.4402 -9.0347 -0.5095 18 6 0.5069 -8.2299 -1.1052 19 6 0.7912 -6.9827 -0.5663 20 7 1.6554 -5.9619 -0.9113 21 1 2.2667 -5.9561 -1.6643 22 1 -0.4850 0.8401 -0.0004 23 1 0.6240 -2.5575 -0.8881 24 1 0.6246 -2.5563 0.8919 25 1 2.8724 -3.6041 0.8910 26 1 2.8711 -3.6048 -0.8890 27 1 -1.3702 -7.0462 2.0606 28 1 -0.6602 -10.0051 -0.9295 29 1 1.0298 -8.5708 -1.9865 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259452827.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:06 Heat of formation + Delta-G solvation = 25.081640 kcal Electronic energy + Delta-G solvation = -14878.027793 eV Core-core repulsion = 12212.022470 eV Total energy + Delta-G solvation = -2666.005323 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.17790 -38.79636 -37.13713 -35.76763 -34.23325 -33.40969 -30.96087 -30.00198 -27.41687 -24.15085 -23.39559 -23.05503 -21.45515 -19.00216 -18.54852 -18.25167 -16.69924 -16.62785 -16.28976 -15.71753 -15.12518 -14.87302 -14.64456 -14.18196 -13.90786 -13.53998 -13.13341 -12.91045 -12.80906 -12.54335 -12.13852 -11.97966 -11.81771 -11.77876 -11.52916 -11.28542 -10.96277 -10.53881 -9.27415 -9.22590 -8.17777 -6.30626 -0.16399 0.26587 1.10373 1.43658 1.47304 1.54796 1.72855 1.90421 2.43803 2.67671 3.16169 3.20639 3.58114 4.02207 4.14140 4.22913 4.32386 4.43236 4.54489 4.64675 4.88923 4.99693 5.17865 5.21005 5.41780 5.48988 5.60667 5.69002 5.84090 6.17997 6.41498 6.87245 6.90902 7.39246 8.94187 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.046609 B = 0.004017 C = 0.003790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.592227 B = 6969.056668 C = 7385.641497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.970 3.030 4 H -0.262 1.262 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.542 4.542 8 H 0.075 0.925 9 C 0.041 3.959 10 C -0.028 4.028 11 C 0.305 3.695 12 N -0.538 5.538 13 C 0.023 3.977 14 C -0.079 4.079 15 C -0.042 4.042 16 Cl -0.061 7.061 17 C -0.095 4.095 18 C -0.083 4.083 19 C 0.036 3.964 20 N -0.583 5.583 21 H 0.441 0.559 22 H 0.262 0.738 23 H -0.014 1.014 24 H -0.007 1.007 25 H 0.094 0.906 26 H 0.103 0.897 27 H 0.130 0.870 28 H 0.174 0.826 29 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.634 -19.515 -3.816 20.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.794 3.206 4 H -0.186 1.186 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.579 4.579 8 H 0.093 0.907 9 C 0.003 3.997 10 C -0.067 4.067 11 C 0.038 3.962 12 N -0.259 5.259 13 C -0.096 4.096 14 C -0.100 4.100 15 C -0.071 4.071 16 Cl -0.032 7.032 17 C -0.115 4.115 18 C -0.104 4.104 19 C -0.075 4.075 20 N -0.196 5.196 21 H 0.283 0.717 22 H 0.071 0.929 23 H 0.004 0.996 24 H 0.011 0.989 25 H 0.112 0.888 26 H 0.121 0.879 27 H 0.148 0.852 28 H 0.192 0.808 29 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 2.083 -19.036 -3.035 19.388 hybrid contribution 0.247 0.716 -0.569 0.947 sum 2.329 -18.320 -3.604 18.816 Atomic orbital electron populations 1.70140 1.08144 1.27842 1.51450 1.26054 0.95688 1.03705 0.94699 0.85427 0.78098 0.77662 0.79397 1.18607 1.21474 1.19046 1.21638 0.93999 0.91512 1.50792 0.90693 1.18802 0.93822 0.91946 0.95100 1.20338 0.96943 0.84996 1.04429 1.24156 0.94302 0.92165 0.85578 1.70444 1.13730 1.13161 1.28541 1.19325 1.00552 0.92886 0.96826 1.20092 0.96995 0.92207 1.00663 1.20524 0.96668 0.92240 0.97631 1.98357 1.55991 1.66376 1.82472 1.21086 0.95252 1.01407 0.93718 1.20276 0.99304 0.89274 1.01508 1.19286 0.96289 0.93292 0.98633 1.43098 1.35575 1.13538 1.27349 0.71682 0.92885 0.99584 0.98892 0.88791 0.87873 0.85163 0.80846 0.81075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.80 13.29 21.45 0.28 -57.51 15 2 C 0.00 -0.21 5.46 84.66 0.46 0.25 15 3 Si 0.97 43.45 29.54 68.60 2.03 45.48 15 4 H -0.26 -10.99 7.11 99.48 0.71 -10.28 15 5 H -0.29 -12.92 7.11 99.48 0.71 -12.21 15 6 H -0.27 -11.39 7.11 99.48 0.71 -10.68 15 7 C -0.54 -29.75 9.11 25.60 0.23 -29.52 15 8 H 0.07 3.76 7.74 -2.91 -0.02 3.74 15 9 C 0.04 2.18 4.91 29.85 0.15 2.33 15 10 C -0.03 -1.09 5.78 29.85 0.17 -0.91 15 11 C 0.31 11.36 7.37 137.92 1.02 12.37 15 12 N -0.54 -22.94 11.21 -179.98 -2.02 -24.96 15 13 C 0.02 0.82 7.23 39.45 0.29 1.10 15 14 C -0.08 -2.46 9.86 22.50 0.22 -2.24 15 15 C -0.04 -1.01 6.31 22.30 0.14 -0.87 15 16 Cl -0.06 -1.29 28.94 -2.72 -0.08 -1.36 15 17 C -0.09 -1.79 9.80 22.33 0.22 -1.57 15 18 C -0.08 -1.63 10.06 22.31 0.22 -1.41 15 19 C 0.04 1.03 7.30 38.84 0.28 1.31 15 20 N -0.58 -16.19 6.23 -179.21 -1.12 -17.31 15 21 H 0.44 8.32 8.96 -92.71 -0.83 7.49 15 22 H 0.26 15.30 8.31 -92.71 -0.77 14.53 15 23 H -0.01 -0.82 8.14 -2.38 -0.02 -0.84 15 24 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 15 25 H 0.09 3.49 8.14 -2.39 -0.02 3.47 15 26 H 0.10 3.27 8.14 -2.39 -0.02 3.25 15 27 H 0.13 4.05 8.06 -2.91 -0.02 4.03 15 28 H 0.17 2.02 8.06 -2.91 -0.02 2.00 15 29 H 0.17 1.94 8.06 -2.91 -0.02 1.92 15 Total: -1.00 -71.73 275.48 2.85 -68.88 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: 0.35 Total: 5.94 kcal Atomic # 6 Polarization: -22.56 SS G_CDS: 3.41 Total: -19.16 kcal Atomic # 7 Polarization: -96.93 SS G_CDS: -2.85 Total: -99.78 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Atomic # 17 Polarization: -1.29 SS G_CDS: -0.08 Total: -1.36 kcal Total: -71.73 2.85 -68.88 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259452827.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.962 kcal (2) G-P(sol) polarization free energy of solvation -71.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds