Wall clock time and date at job start Mon Mar 30 2020 05:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38748 * 119.87086 * 2 1 4 4 C 1.37823 * 120.70670 * 179.97438 * 3 2 1 5 5 C 1.50698 * 120.01149 * 179.97438 * 4 3 2 6 6 C 1.50703 * 109.46746 * 264.99638 * 5 4 3 7 7 H 1.07991 * 120.00449 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99722 * 179.97438 * 6 5 4 9 9 N 1.31520 * 119.99827 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00037 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47234 * 60.00199 * 10 8 6 12 12 H 1.48502 * 109.47408 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.46966 * 300.00372 * 10 8 6 14 14 C 1.38952 * 119.97660 * 359.97438 * 4 3 2 15 15 O 1.34837 * 133.40305 * 180.02562 * 14 4 3 16 16 C 1.34456 * 110.89162 * 179.97438 * 15 14 4 17 17 C 1.33991 * 110.14580 * 359.73404 * 16 15 14 18 18 C 1.40441 * 119.33110 * 359.97438 * 14 4 3 19 19 C 1.37837 * 119.87040 * 179.97438 * 2 1 3 20 20 Cl 1.73601 * 120.21274 * 0.04614 * 19 2 1 21 21 H 1.08997 * 109.47338 * 270.02861 * 1 2 3 22 22 H 1.09004 * 109.46683 * 30.02924 * 1 2 3 23 23 H 1.09003 * 109.46766 * 150.02071 * 1 2 3 24 24 H 1.08003 * 119.65038 * 359.97438 * 3 2 1 25 25 H 1.09000 * 109.47297 * 24.99650 * 5 4 3 26 26 H 1.09002 * 109.46902 * 144.99937 * 5 4 3 27 27 H 0.96997 * 119.99309 * 179.97438 * 9 8 6 28 28 H 1.08005 * 124.92441 * 180.02562 * 16 15 14 29 29 H 1.08001 * 126.90765 * 180.31978 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.2032 0.0000 4 6 3.5761 1.2233 0.0005 5 6 4.3107 2.5390 -0.0001 6 6 4.6643 2.9162 -1.4156 7 1 4.3847 2.2683 -2.2330 8 6 5.3440 4.0892 -1.6672 9 7 5.6841 4.8786 -0.6717 10 14 5.7817 4.5571 -3.4218 11 1 4.5391 4.6832 -4.2252 12 1 6.5057 5.8537 -3.4225 13 1 6.6487 3.5062 -4.0128 14 6 4.2879 0.0299 0.0016 15 8 5.6038 -0.2641 0.0028 16 6 5.7979 -1.5945 0.0041 17 6 4.6198 -2.2328 0.0097 18 6 3.5887 -1.1881 0.0027 19 6 2.1935 -1.1953 0.0005 20 17 1.3277 -2.6999 0.0000 21 1 -0.3634 0.0005 1.0276 22 1 -0.3633 0.8898 -0.5143 23 1 -0.3633 -0.8902 -0.5135 24 1 1.6502 2.1339 -0.0004 25 1 3.6745 3.3106 0.4334 26 1 5.2226 2.4463 0.5898 27 1 6.1626 5.7035 -0.8488 28 1 6.7635 -2.0785 0.0055 29 1 4.4609 -3.3010 0.0168 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259475262.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:41 Heat of formation + Delta-G solvation = 3.868172 kcal Electronic energy + Delta-G solvation = -15540.217202 eV Core-core repulsion = 12840.999243 eV Total energy + Delta-G solvation = -2699.217959 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.050 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.97490 -38.05872 -36.14151 -33.76441 -32.37436 -31.84664 -29.37627 -27.27509 -26.36856 -23.47464 -21.90193 -21.21457 -19.84017 -17.14819 -16.72287 -16.40068 -15.53541 -15.04701 -14.61192 -13.93839 -13.64185 -13.33405 -12.76770 -12.41204 -12.34684 -12.16682 -12.06126 -11.74829 -11.34959 -11.14018 -10.67736 -10.60032 -10.55691 -10.51891 -9.80796 -9.59825 -9.25902 -8.45526 -8.03107 -7.48507 -6.07470 -4.11860 1.28434 1.72993 2.44241 2.73461 3.30020 3.30878 3.34681 3.38180 4.04370 4.43090 4.72396 5.12262 5.18984 5.29158 5.41455 5.51393 5.74503 5.80079 5.82628 6.02105 6.07592 6.28925 6.48430 6.61027 6.72161 6.84812 7.06648 7.44404 7.60560 7.66145 7.86684 8.23561 8.91411 9.51827 11.02282 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.026289 B = 0.006806 C = 0.005971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.839998 B = 4113.146948 C = 4688.584873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.084 4.084 3 C -0.104 4.104 4 C -0.007 4.007 5 C 0.049 3.951 6 C -0.513 4.513 7 H 0.056 0.944 8 C 0.061 3.939 9 N -0.893 5.893 10 Si 0.897 3.103 11 H -0.275 1.275 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.065 3.935 15 O -0.175 6.175 16 C 0.008 3.992 17 C -0.218 4.218 18 C -0.125 4.125 19 C -0.023 4.023 20 Cl -0.084 7.084 21 H 0.070 0.930 22 H 0.070 0.930 23 H 0.068 0.932 24 H 0.140 0.860 25 H 0.036 0.964 26 H 0.034 0.966 27 H 0.263 0.737 28 H 0.204 0.796 29 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.872 -12.295 2.263 13.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.085 4.085 3 C -0.122 4.122 4 C -0.008 4.008 5 C 0.013 3.987 6 C -0.551 4.551 7 H 0.074 0.926 8 C -0.141 4.141 9 N -0.531 5.531 10 Si 0.724 3.276 11 H -0.201 1.201 12 H -0.212 1.212 13 H -0.201 1.201 14 C 0.017 3.983 15 O -0.075 6.075 16 C -0.058 4.058 17 C -0.237 4.237 18 C -0.126 4.126 19 C -0.050 4.050 20 Cl -0.055 7.055 21 H 0.089 0.911 22 H 0.089 0.911 23 H 0.087 0.913 24 H 0.158 0.842 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.073 0.927 28 H 0.220 0.780 29 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -5.658 -12.044 2.305 13.505 hybrid contribution 0.278 -0.121 -0.990 1.035 sum -5.380 -12.164 1.315 13.366 Atomic orbital electron populations 1.20774 0.90530 1.03059 1.02389 1.19584 0.96354 0.91056 1.01498 1.20661 0.92281 0.96912 1.02366 1.19806 0.92521 0.94385 0.94042 1.18365 0.95286 0.86805 0.98285 1.20941 1.36942 1.05726 0.91486 0.92563 1.24976 0.95544 0.96218 0.97323 1.69943 1.39600 1.12644 1.30940 0.86578 0.78717 0.77692 0.84613 1.20077 1.21154 1.20149 1.19352 0.80786 0.94110 1.04006 1.84140 1.24526 1.23873 1.74987 1.23942 0.99929 0.80614 1.01299 1.22311 0.90866 0.99174 1.11349 1.19566 0.92341 0.93712 1.07017 1.19765 0.89267 0.85982 1.09941 1.98292 1.76863 1.33199 1.97148 0.91139 0.91121 0.91329 0.84206 0.94623 0.94778 0.92694 0.77983 0.82989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.44 9.61 36.01 0.35 -1.10 15 2 C -0.08 -1.41 5.88 -104.58 -0.62 -2.03 15 3 C -0.10 -1.97 9.29 -39.54 -0.37 -2.34 15 4 C -0.01 -0.15 5.08 -104.51 -0.53 -0.68 15 5 C 0.05 1.27 5.11 -29.03 -0.15 1.12 15 6 C -0.51 -14.35 9.09 -34.44 -0.31 -14.66 15 7 H 0.06 1.57 7.74 -52.49 -0.41 1.17 15 8 C 0.06 1.72 5.46 -17.82 -0.10 1.63 15 9 N -0.89 -26.14 13.29 55.43 0.74 -25.41 15 10 Si 0.90 21.52 29.54 -169.99 -5.02 16.49 15 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 12 H -0.29 -6.75 7.11 56.52 0.40 -6.35 15 13 H -0.28 -6.58 7.11 56.52 0.40 -6.17 15 14 C 0.07 1.38 7.10 -38.49 -0.27 1.10 15 15 O -0.18 -3.56 10.58 3.81 0.04 -3.52 15 16 C 0.01 0.12 11.96 29.24 0.35 0.47 15 17 C -0.22 -3.36 11.07 -37.62 -0.42 -3.78 15 18 C -0.12 -2.32 6.23 -105.14 -0.65 -2.97 15 19 C -0.02 -0.40 6.34 -39.25 -0.25 -0.65 15 20 Cl -0.08 -1.21 27.25 -51.86 -1.41 -2.62 15 21 H 0.07 0.82 8.14 -51.93 -0.42 0.40 15 22 H 0.07 0.83 8.08 -51.93 -0.42 0.42 15 23 H 0.07 0.84 6.89 -51.93 -0.36 0.48 15 24 H 0.14 2.43 8.06 -52.48 -0.42 2.01 15 25 H 0.04 0.93 8.05 -51.93 -0.42 0.51 15 26 H 0.03 0.94 8.12 -51.93 -0.42 0.52 15 27 H 0.26 7.29 8.31 -40.82 -0.34 6.95 15 28 H 0.20 2.01 8.06 -52.48 -0.42 1.59 15 29 H 0.15 1.91 8.06 -52.49 -0.42 1.49 15 LS Contribution 273.70 15.07 4.12 4.12 Total: -1.00 -30.52 273.70 -7.35 -37.87 By element: Atomic # 1 Polarization: -0.22 SS G_CDS: -2.85 Total: -3.07 kcal Atomic # 6 Polarization: -20.91 SS G_CDS: -2.97 Total: -23.88 kcal Atomic # 7 Polarization: -26.14 SS G_CDS: 0.74 Total: -25.41 kcal Atomic # 8 Polarization: -3.56 SS G_CDS: 0.04 Total: -3.52 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 17 Polarization: -1.21 SS G_CDS: -1.41 Total: -2.62 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -30.52 -7.35 -37.87 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259475262.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.743 kcal (2) G-P(sol) polarization free energy of solvation -30.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds