Wall clock time and date at job start Mon Mar 30 2020 05:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38748 * 119.87086 * 2 1 4 4 C 1.37823 * 120.70670 * 179.97438 * 3 2 1 5 5 C 1.50698 * 120.01149 * 179.97438 * 4 3 2 6 6 C 1.50703 * 109.46746 * 264.99638 * 5 4 3 7 7 H 1.07991 * 120.00449 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99722 * 179.97438 * 6 5 4 9 9 N 1.31520 * 119.99827 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00037 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47234 * 60.00199 * 10 8 6 12 12 H 1.48502 * 109.47408 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.46966 * 300.00372 * 10 8 6 14 14 C 1.38952 * 119.97660 * 359.97438 * 4 3 2 15 15 O 1.34837 * 133.40305 * 180.02562 * 14 4 3 16 16 C 1.34456 * 110.89162 * 179.97438 * 15 14 4 17 17 C 1.33991 * 110.14580 * 359.73404 * 16 15 14 18 18 C 1.40441 * 119.33110 * 359.97438 * 14 4 3 19 19 C 1.37837 * 119.87040 * 179.97438 * 2 1 3 20 20 Cl 1.73601 * 120.21274 * 0.04614 * 19 2 1 21 21 H 1.08997 * 109.47338 * 270.02861 * 1 2 3 22 22 H 1.09004 * 109.46683 * 30.02924 * 1 2 3 23 23 H 1.09003 * 109.46766 * 150.02071 * 1 2 3 24 24 H 1.08003 * 119.65038 * 359.97438 * 3 2 1 25 25 H 1.09000 * 109.47297 * 24.99650 * 5 4 3 26 26 H 1.09002 * 109.46902 * 144.99937 * 5 4 3 27 27 H 0.96997 * 119.99309 * 179.97438 * 9 8 6 28 28 H 1.08005 * 124.92441 * 180.02562 * 16 15 14 29 29 H 1.08001 * 126.90765 * 180.31978 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.2032 0.0000 4 6 3.5761 1.2233 0.0005 5 6 4.3107 2.5390 -0.0001 6 6 4.6643 2.9162 -1.4156 7 1 4.3847 2.2683 -2.2330 8 6 5.3440 4.0892 -1.6672 9 7 5.6841 4.8786 -0.6717 10 14 5.7817 4.5571 -3.4218 11 1 4.5391 4.6832 -4.2252 12 1 6.5057 5.8537 -3.4225 13 1 6.6487 3.5062 -4.0128 14 6 4.2879 0.0299 0.0016 15 8 5.6038 -0.2641 0.0028 16 6 5.7979 -1.5945 0.0041 17 6 4.6198 -2.2328 0.0097 18 6 3.5887 -1.1881 0.0027 19 6 2.1935 -1.1953 0.0005 20 17 1.3277 -2.6999 0.0000 21 1 -0.3634 0.0005 1.0276 22 1 -0.3633 0.8898 -0.5143 23 1 -0.3633 -0.8902 -0.5135 24 1 1.6502 2.1339 -0.0004 25 1 3.6745 3.3106 0.4334 26 1 5.2226 2.4463 0.5898 27 1 6.1626 5.7035 -0.8488 28 1 6.7635 -2.0785 0.0055 29 1 4.4609 -3.3010 0.0168 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259475262.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:40 Heat of formation + Delta-G solvation = -12.848979 kcal Electronic energy + Delta-G solvation = -15540.942112 eV Core-core repulsion = 12840.999243 eV Total energy + Delta-G solvation = -2699.942869 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.050 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.36075 -39.46175 -37.45703 -35.63091 -33.83798 -33.47588 -30.80610 -29.03501 -27.68394 -25.40165 -23.34346 -22.54899 -21.34702 -18.64644 -18.45383 -18.02037 -17.01749 -16.66334 -16.33061 -15.20128 -14.93414 -14.84503 -14.39903 -14.11753 -13.81948 -13.51540 -13.25281 -13.19711 -12.98671 -12.78220 -12.46403 -12.37849 -12.15022 -11.80054 -11.52466 -11.44279 -10.83692 -10.62640 -9.41154 -8.93868 -8.21738 -6.36090 -0.11883 0.29858 1.11662 1.37968 1.41113 1.46093 1.50038 2.00419 2.36839 2.61491 3.08390 3.50060 3.79998 3.88009 4.10756 4.32285 4.41471 4.56807 4.73902 4.79693 4.83316 4.99191 5.06270 5.16891 5.27011 5.38566 5.50939 5.64595 5.68836 5.74542 6.09296 6.26076 6.73678 7.31998 8.86818 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.026289 B = 0.006806 C = 0.005971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.839998 B = 4113.146948 C = 4688.584873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.082 4.082 3 C -0.105 4.105 4 C -0.044 4.044 5 C 0.062 3.938 6 C -0.529 4.529 7 H 0.050 0.950 8 C 0.009 3.991 9 N -0.927 5.927 10 Si 0.964 3.036 11 H -0.265 1.265 12 H -0.277 1.277 13 H -0.272 1.272 14 C 0.031 3.969 15 O -0.211 6.211 16 C 0.012 3.988 17 C -0.217 4.217 18 C -0.132 4.132 19 C -0.026 4.026 20 Cl -0.052 7.052 21 H 0.089 0.911 22 H 0.082 0.918 23 H 0.079 0.921 24 H 0.147 0.853 25 H 0.018 0.982 26 H -0.001 1.001 27 H 0.267 0.733 28 H 0.252 0.748 29 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.797 -14.331 1.306 15.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.083 4.083 3 C -0.123 4.123 4 C -0.044 4.044 5 C 0.025 3.975 6 C -0.567 4.567 7 H 0.068 0.932 8 C -0.189 4.189 9 N -0.566 5.566 10 Si 0.788 3.212 11 H -0.189 1.189 12 H -0.202 1.202 13 H -0.197 1.197 14 C -0.016 4.016 15 O -0.112 6.112 16 C -0.052 4.052 17 C -0.236 4.236 18 C -0.134 4.134 19 C -0.053 4.053 20 Cl -0.023 7.023 21 H 0.107 0.893 22 H 0.101 0.899 23 H 0.098 0.902 24 H 0.165 0.835 25 H 0.036 0.964 26 H 0.017 0.983 27 H 0.076 0.924 28 H 0.268 0.732 29 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -6.598 -14.098 1.352 15.624 hybrid contribution 0.530 0.378 -0.634 0.909 sum -6.068 -13.720 0.719 15.019 Atomic orbital electron populations 1.20866 0.87465 1.04231 1.03906 1.19928 0.98394 0.90000 0.99962 1.20790 0.91241 0.98439 1.01808 1.19591 0.93820 0.93097 0.97919 1.18026 0.93905 0.88847 0.96717 1.21224 1.37170 1.05926 0.92395 0.93202 1.25875 0.95248 0.96049 1.01772 1.70064 1.40257 1.13111 1.33215 0.85512 0.78800 0.77565 0.79281 1.18943 1.20249 1.19686 1.19489 0.81621 0.94847 1.05685 1.84110 1.24538 1.26788 1.75779 1.24960 1.02170 0.78691 0.99400 1.22694 0.89762 1.00129 1.11021 1.19945 0.93380 0.93684 1.06402 1.19983 0.89274 0.87528 1.08475 1.98299 1.76010 1.31049 1.96920 0.89292 0.89892 0.90236 0.83505 0.96380 0.98258 0.92419 0.73196 0.79688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.52 9.61 71.24 0.68 -1.84 15 2 C -0.08 -2.65 5.88 -19.84 -0.12 -2.77 15 3 C -0.10 -4.03 9.29 22.29 0.21 -3.82 15 4 C -0.04 -2.02 5.08 -19.79 -0.10 -2.12 15 5 C 0.06 3.40 5.11 29.10 0.15 3.55 15 6 C -0.53 -30.82 9.09 25.60 0.23 -30.59 15 7 H 0.05 2.89 7.74 -2.92 -0.02 2.87 15 8 C 0.01 0.53 5.46 84.65 0.46 0.99 15 9 N -0.93 -56.03 13.29 21.45 0.28 -55.75 15 10 Si 0.96 44.63 29.54 68.60 2.03 46.65 15 11 H -0.26 -11.72 7.11 99.48 0.71 -11.01 15 12 H -0.28 -12.36 7.11 99.48 0.71 -11.65 15 13 H -0.27 -12.30 7.11 99.48 0.71 -11.59 15 14 C 0.03 1.34 7.10 22.98 0.16 1.51 15 15 O -0.21 -8.77 10.58 -9.28 -0.10 -8.86 15 16 C 0.01 0.35 11.96 66.85 0.80 1.14 15 17 C -0.22 -6.21 11.07 23.54 0.26 -5.95 15 18 C -0.13 -4.80 6.23 -20.20 -0.13 -4.93 15 19 C -0.03 -0.85 6.34 22.49 0.14 -0.71 15 20 Cl -0.05 -1.34 27.25 -2.72 -0.07 -1.41 15 21 H 0.09 1.78 8.14 -2.39 -0.02 1.76 15 22 H 0.08 1.75 8.08 -2.38 -0.02 1.73 15 23 H 0.08 1.69 6.89 -2.39 -0.02 1.67 15 24 H 0.15 5.23 8.06 -2.91 -0.02 5.21 15 25 H 0.02 1.01 8.05 -2.39 -0.02 0.99 15 26 H 0.00 -0.05 8.12 -2.39 -0.02 -0.07 15 27 H 0.27 15.11 8.31 -92.71 -0.77 14.34 15 28 H 0.25 4.17 8.06 -2.91 -0.02 4.15 15 29 H 0.19 3.92 8.06 -2.91 -0.02 3.90 15 Total: -1.00 -68.69 273.70 6.06 -62.63 By element: Atomic # 1 Polarization: 1.12 SS G_CDS: 1.16 Total: 2.28 kcal Atomic # 6 Polarization: -48.30 SS G_CDS: 2.76 Total: -45.54 kcal Atomic # 7 Polarization: -56.03 SS G_CDS: 0.28 Total: -55.75 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: -0.10 Total: -8.86 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal Atomic # 17 Polarization: -1.34 SS G_CDS: -0.07 Total: -1.41 kcal Total: -68.69 6.06 -62.63 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259475262.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.777 kcal (2) G-P(sol) polarization free energy of solvation -68.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds