Wall clock time and date at job start Mon Mar 30 2020 05:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00005 * 2 1 4 4 H 1.48499 * 109.47214 * 269.99835 * 3 2 1 5 5 H 1.48495 * 109.47385 * 30.00201 * 3 2 1 6 6 H 1.48505 * 109.46739 * 150.00292 * 3 2 1 7 7 C 1.37878 * 119.99730 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00261 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99967 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.47290 * 179.97438 * 9 7 2 11 11 C 1.50704 * 109.47290 * 179.97438 * 10 9 7 12 12 C 1.38848 * 119.91943 * 264.99564 * 11 10 9 13 13 C 1.36073 * 120.61037 * 180.02562 * 12 11 10 14 14 C 1.41237 * 120.49953 * 0.02562 * 13 12 11 15 15 C 1.45387 * 129.31730 * 179.97438 * 14 13 12 16 16 C 1.31839 * 114.89362 * 179.97438 * 15 14 13 17 17 S 1.75309 * 111.38275 * 359.97438 * 16 15 14 18 18 C 1.39658 * 118.84446 * 359.97438 * 14 13 12 19 19 C 1.37658 * 119.92230 * 85.01716 * 11 10 9 20 20 F 1.35102 * 119.93138 * 359.97438 * 19 11 10 21 21 H 0.97000 * 119.99806 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.47495 * 59.99574 * 9 7 2 23 23 H 1.08997 * 109.46851 * 299.99522 * 9 7 2 24 24 H 1.09004 * 109.47517 * 59.99290 * 10 9 7 25 25 H 1.09005 * 109.46604 * 299.99828 * 10 9 7 26 26 H 1.08007 * 119.69456 * 0.02562 * 12 11 10 27 27 H 1.07997 * 119.74516 * 180.02562 * 13 12 11 28 28 H 1.08003 * 122.55268 * 0.02562 * 15 14 13 29 29 H 1.07998 * 124.31006 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0215 -2.6366 -0.0001 11 6 5.5285 -2.6367 -0.0001 12 6 6.2210 -2.7416 -1.1990 13 6 7.5816 -2.7436 -1.2154 14 6 8.3131 -2.6394 -0.0117 15 6 9.7524 -2.6228 0.1931 16 6 10.1328 -2.5131 1.4507 17 16 8.7542 -2.4168 2.5294 18 6 7.6156 -2.5339 1.1937 19 6 6.2152 -2.5332 1.1884 20 9 5.5368 -2.4312 2.3523 21 1 -0.4850 0.8401 -0.0004 22 1 3.8746 -0.6809 0.8905 23 1 3.8751 -0.6798 -0.8895 24 1 3.6584 -3.1504 -0.8903 25 1 3.6578 -3.1506 0.8897 26 1 5.6747 -2.8224 -2.1272 27 1 8.1061 -2.8255 -2.1559 28 1 10.4564 -2.6940 -0.6229 29 1 11.1626 -2.4852 1.7750 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259545877.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:27 Heat of formation + Delta-G solvation = -14.748838 kcal Electronic energy + Delta-G solvation = -15232.456753 eV Core-core repulsion = 12546.847996 eV Total energy + Delta-G solvation = -2685.608757 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.61048 -39.45642 -35.88059 -33.49958 -31.70724 -30.45288 -28.79182 -25.38293 -23.50225 -22.29592 -20.89228 -20.20127 -18.14516 -16.85869 -16.53557 -16.20150 -15.45475 -14.60966 -14.50363 -14.38130 -14.17458 -13.31105 -13.21486 -12.74539 -12.72701 -12.41216 -11.77265 -11.72787 -11.57924 -11.00809 -10.91790 -10.71763 -10.16029 -9.90928 -9.74776 -9.51048 -9.22088 -8.54358 -8.35310 -7.63779 -6.05145 -4.03631 0.65189 1.16382 1.41364 1.89957 2.18156 3.31103 3.38881 3.44540 3.63903 4.29756 4.45483 4.51975 4.87223 4.96911 5.15612 5.27568 5.29149 5.56519 5.65638 5.78097 5.97718 6.05613 6.28660 6.35550 6.38342 6.58920 6.68242 6.95253 7.23201 7.37098 7.76073 8.51187 8.98870 9.57105 11.08089 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.033356 B = 0.005725 C = 0.005549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.226689 B = 4889.909948 C = 5044.969710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.069 3.931 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.521 4.521 8 H 0.074 0.926 9 C -0.005 4.005 10 C -0.070 4.070 11 C -0.077 4.077 12 C -0.089 4.089 13 C -0.091 4.091 14 C -0.070 4.070 15 C -0.114 4.114 16 C -0.198 4.198 17 S 0.094 5.906 18 C -0.172 4.172 19 C 0.125 3.875 20 F -0.127 7.127 21 H 0.263 0.737 22 H 0.017 0.983 23 H 0.014 0.986 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.140 0.860 27 H 0.131 0.869 28 H 0.146 0.854 29 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.573 -5.797 -0.080 21.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.133 4.133 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.559 4.559 8 H 0.092 0.908 9 C -0.043 4.043 10 C -0.108 4.108 11 C -0.081 4.081 12 C -0.109 4.109 13 C -0.111 4.111 14 C -0.077 4.077 15 C -0.144 4.144 16 C -0.332 4.332 17 S 0.357 5.643 18 C -0.288 4.288 19 C 0.101 3.899 20 F -0.106 7.106 21 H 0.073 0.927 22 H 0.036 0.964 23 H 0.033 0.967 24 H 0.093 0.907 25 H 0.090 0.910 26 H 0.158 0.842 27 H 0.149 0.851 28 H 0.164 0.836 29 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 20.337 -5.533 1.568 21.135 hybrid contribution 0.454 0.875 -1.251 1.593 sum 20.791 -4.658 0.317 21.309 Atomic orbital electron populations 1.69908 1.06255 1.26924 1.51005 1.24991 0.94714 0.99106 0.94468 0.86817 0.80512 0.83712 0.78573 1.20192 1.21264 1.18976 1.21088 0.89109 0.94618 1.51067 0.90811 1.19551 0.97233 0.90844 0.96654 1.20655 0.85992 1.01146 1.03001 1.20405 0.98728 0.97968 0.90961 1.20608 0.93580 0.98938 0.97736 1.20695 0.93778 1.00388 0.96218 1.19107 0.92312 1.03845 0.92477 1.20904 0.93348 1.03031 0.97159 1.25079 1.02756 1.08475 0.96842 1.84252 0.94293 1.78251 1.07507 1.22685 0.95932 1.11648 0.98491 1.16704 0.86256 1.04602 0.82300 1.91518 1.79754 1.93305 1.46005 0.92687 0.96421 0.96734 0.90663 0.90975 0.84244 0.85147 0.83596 0.81504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.00 13.96 55.43 0.77 -27.23 15 2 C 0.07 2.02 5.47 -17.82 -0.10 1.92 15 3 Si 0.88 22.13 27.47 -169.99 -4.67 17.46 15 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 15 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 15 6 H -0.27 -6.57 6.54 56.52 0.37 -6.20 15 7 C -0.52 -14.95 9.66 -34.44 -0.33 -15.29 15 8 H 0.07 2.25 7.99 -52.49 -0.42 1.83 15 9 C -0.01 -0.13 4.02 -27.88 -0.11 -0.24 15 10 C -0.07 -1.41 5.04 -27.88 -0.14 -1.55 15 11 C -0.08 -1.35 5.13 -104.61 -0.54 -1.89 15 12 C -0.09 -1.28 9.58 -40.13 -0.38 -1.66 15 13 C -0.09 -1.15 10.04 -39.22 -0.39 -1.54 15 14 C -0.07 -0.95 6.04 -105.38 -0.64 -1.59 15 15 C -0.11 -1.22 10.39 -38.64 -0.40 -1.62 15 16 C -0.20 -2.02 11.02 28.83 0.32 -1.70 15 17 S 0.09 1.22 23.23 -107.50 -2.50 -1.28 15 18 C -0.17 -2.71 6.46 -38.38 -0.25 -2.95 15 19 C 0.13 2.25 7.27 -39.12 -0.28 1.97 15 20 F -0.13 -2.48 16.53 2.25 0.04 -2.45 15 21 H 0.26 7.65 8.31 -40.82 -0.34 7.31 15 22 H 0.02 0.45 7.20 -51.93 -0.37 0.07 15 23 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 15 24 H 0.07 1.40 8.05 -51.93 -0.42 0.98 15 25 H 0.07 1.48 7.77 -51.93 -0.40 1.08 15 26 H 0.14 1.72 8.06 -52.48 -0.42 1.30 15 27 H 0.13 1.21 8.06 -52.49 -0.42 0.79 15 28 H 0.15 1.11 8.06 -52.48 -0.42 0.69 15 29 H 0.17 1.16 8.06 -52.49 -0.42 0.74 15 LS Contribution 271.21 15.07 4.09 4.09 Total: -1.00 -31.76 271.21 -8.39 -40.15 By element: Atomic # 1 Polarization: -1.72 SS G_CDS: -2.87 Total: -4.59 kcal Atomic # 6 Polarization: -22.90 SS G_CDS: -3.25 Total: -26.15 kcal Atomic # 7 Polarization: -28.00 SS G_CDS: 0.77 Total: -27.23 kcal Atomic # 9 Polarization: -2.48 SS G_CDS: 0.04 Total: -2.45 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.67 Total: 17.46 kcal Atomic # 16 Polarization: 1.22 SS G_CDS: -2.50 Total: -1.28 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -31.76 -8.39 -40.15 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259545877.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.396 kcal (2) G-P(sol) polarization free energy of solvation -31.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds