Wall clock time and date at job start Mon Mar 30 2020 05:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.31115 * 121.87052 * 2 1 4 4 S 1.75793 * 109.59068 * 179.97438 * 3 2 1 5 5 C 1.76409 * 90.62158 * 359.97438 * 4 3 2 6 6 N 1.33273 * 141.24054 * 180.02562 * 5 4 3 7 7 C 1.32219 * 109.89484 * 179.97438 * 6 5 4 8 8 C 1.38559 * 107.82764 * 0.02562 * 7 6 5 9 9 C 1.40433 * 126.88930 * 180.02562 * 8 7 6 10 10 O 1.21558 * 119.99841 * 186.38896 * 9 8 7 11 11 C 1.50700 * 119.99854 * 6.39092 * 9 8 7 12 12 C 1.50706 * 109.46856 * 179.97438 * 11 9 8 13 13 H 1.08000 * 119.99788 * 0.02562 * 12 11 9 14 14 C 1.37874 * 119.99713 * 179.97438 * 12 11 9 15 15 N 1.31516 * 120.00309 * 359.97438 * 14 12 11 16 16 Si 1.86807 * 119.99600 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47033 * 60.00207 * 16 14 12 18 18 H 1.48500 * 109.46960 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47077 * 299.99717 * 16 14 12 20 20 N 1.34155 * 109.20746 * 359.97438 * 5 4 3 21 21 H 1.09000 * 109.47241 * 97.04839 * 1 2 3 22 22 H 1.08998 * 109.47796 * 217.05257 * 1 2 3 23 23 H 1.09004 * 109.47165 * 337.05393 * 1 2 3 24 24 H 1.08001 * 125.20345 * 359.95699 * 3 2 1 25 25 H 1.07999 * 126.08274 * 179.97438 * 7 6 5 26 26 H 1.08991 * 109.47534 * 300.00006 * 11 9 8 27 27 H 1.09004 * 109.47178 * 60.00332 * 11 9 8 28 28 H 0.96997 * 119.99926 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1993 1.1135 0.0000 4 16 3.9170 0.7396 0.0007 5 6 3.5605 -0.9881 0.0018 6 7 4.1676 -2.1745 0.0031 7 6 3.2658 -3.1414 0.0038 8 6 2.0119 -2.5520 0.0022 9 6 0.7712 -3.2099 0.0028 10 8 -0.2558 -2.5705 -0.1159 11 6 0.7130 -4.7085 0.1505 12 6 -0.7243 -5.1608 0.1206 13 1 -1.5163 -4.4355 0.0056 14 6 -1.0279 -6.5004 0.2389 15 7 -0.0634 -7.3836 0.3774 16 14 -2.8095 -7.0611 0.2011 17 1 -3.4253 -6.6664 -1.0913 18 1 -2.8668 -8.5378 0.3468 19 1 -3.5525 -6.4247 1.3183 20 7 2.2306 -1.1643 0.0021 21 1 -0.3634 -0.1261 -1.0199 22 1 -0.3634 -0.8201 0.6192 23 1 -0.3634 0.9464 0.4007 24 1 1.7786 2.1082 -0.0007 25 1 3.4703 -4.2019 0.0045 26 1 1.2585 -5.1759 -0.6692 27 1 1.1649 -4.9978 1.0993 28 1 -0.2771 -8.3261 0.4610 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259645004.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:11 Heat of formation + Delta-G solvation = 57.404008 kcal Electronic energy + Delta-G solvation = -15603.505071 eV Core-core repulsion = 12940.945057 eV Total energy + Delta-G solvation = -2662.560014 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.63277 -38.18952 -37.11155 -33.01088 -31.25326 -30.73260 -29.03716 -27.47446 -24.49886 -23.14042 -21.97507 -21.03737 -18.40116 -17.80086 -16.48239 -16.28859 -15.45770 -15.18258 -15.01200 -14.41659 -13.81423 -13.65890 -13.41862 -13.29151 -12.84980 -12.29005 -12.06265 -11.44020 -11.33915 -11.15992 -10.85617 -10.66025 -10.36667 -10.22440 -10.01207 -9.35263 -8.83771 -8.68744 -8.47240 -7.61370 -6.09930 -4.10865 0.60679 0.78311 1.51461 1.85453 2.49743 2.69604 3.33162 3.36487 3.40778 3.68645 4.39909 4.44914 4.61795 4.96008 5.12340 5.28114 5.28350 5.42095 5.61692 5.70105 5.83677 6.31602 6.55197 6.62142 6.84054 7.15549 7.27377 7.66398 7.89154 8.14940 8.55331 8.97347 9.53976 11.02066 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.042655 B = 0.005731 C = 0.005075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.277318 B = 4884.845154 C = 5516.363152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.104 3.896 3 C -0.245 4.245 4 S 0.182 5.818 5 C 0.143 3.857 6 N -0.466 5.466 7 C 0.105 3.895 8 C -0.107 4.107 9 C 0.416 3.584 10 O -0.473 6.473 11 C -0.008 4.008 12 C -0.517 4.517 13 H 0.073 0.927 14 C 0.058 3.942 15 N -0.897 5.897 16 Si 0.900 3.100 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.276 1.276 20 N -0.371 5.371 21 H 0.084 0.916 22 H 0.108 0.892 23 H 0.078 0.922 24 H 0.196 0.804 25 H 0.204 0.796 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.915 15.494 -0.425 16.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.007 4.007 3 C -0.381 4.381 4 S 0.432 5.568 5 C -0.221 4.221 6 N -0.189 5.189 7 C -0.053 4.053 8 C -0.220 4.220 9 C 0.297 3.703 10 O -0.351 6.351 11 C -0.046 4.046 12 C -0.555 4.555 13 H 0.091 0.909 14 C -0.143 4.143 15 N -0.536 5.536 16 Si 0.728 3.272 17 H -0.201 1.201 18 H -0.213 1.213 19 H -0.202 1.202 20 N -0.048 5.048 21 H 0.103 0.897 22 H 0.126 0.874 23 H 0.096 0.904 24 H 0.213 0.787 25 H 0.221 0.779 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.362 16.371 -0.465 17.956 hybrid contribution -2.737 -1.108 -0.035 2.953 sum 4.624 15.264 -0.500 15.957 Atomic orbital electron populations 1.21039 0.85409 1.04650 1.05275 1.19335 0.97228 0.82756 1.01403 1.24838 0.96193 1.01886 1.15221 1.84528 1.03072 0.87577 1.81578 1.26433 0.83418 1.01703 1.10535 1.70274 1.32181 0.94560 1.21895 1.23436 0.86024 0.99446 0.96382 1.21972 1.00426 0.78376 1.21236 1.21124 0.84182 0.94024 0.70921 1.90383 1.37516 1.68771 1.38415 1.19461 1.00325 0.85000 0.99794 1.21084 0.91564 0.92597 1.50287 0.90926 1.24983 0.97691 0.96606 0.95039 1.69936 1.31841 1.01961 1.49890 0.86518 0.84706 0.77212 0.78774 1.20145 1.21283 1.20166 1.43720 1.06922 1.06186 1.47999 0.89741 0.87352 0.90368 0.78725 0.77918 0.92465 0.92476 0.92718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.44 8.76 36.00 0.32 -1.13 15 2 C 0.10 1.51 6.75 -81.99 -0.55 0.95 15 3 C -0.24 -2.68 10.80 28.98 0.31 -2.37 15 4 S 0.18 2.14 23.38 -107.50 -2.51 -0.38 15 5 C 0.14 2.38 8.89 -88.81 -0.79 1.59 15 6 N -0.47 -8.37 11.24 -12.90 -0.14 -8.51 15 7 C 0.11 1.87 11.34 -17.27 -0.20 1.67 15 8 C -0.11 -2.09 6.89 -82.95 -0.57 -2.66 15 9 C 0.42 9.20 6.90 -33.48 -0.23 8.97 15 10 O -0.47 -10.99 11.90 5.32 0.06 -10.93 15 11 C -0.01 -0.21 4.75 -29.03 -0.14 -0.34 15 12 C -0.52 -14.41 8.92 -34.44 -0.31 -14.72 15 13 H 0.07 2.07 6.75 -52.49 -0.35 1.72 15 14 C 0.06 1.62 5.46 -17.82 -0.10 1.53 15 15 N -0.90 -25.68 13.29 55.43 0.74 -24.95 15 16 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 15 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 15 18 H -0.29 -6.75 7.11 56.52 0.40 -6.35 15 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 15 20 N -0.37 -6.53 3.19 -57.12 -0.18 -6.72 15 21 H 0.08 1.19 8.14 -51.93 -0.42 0.77 15 22 H 0.11 1.85 5.53 -51.93 -0.29 1.57 15 23 H 0.08 0.78 8.06 -51.93 -0.42 0.36 15 24 H 0.20 1.34 8.06 -52.49 -0.42 0.91 15 25 H 0.20 3.10 7.95 -52.49 -0.42 2.68 15 26 H 0.06 1.41 8.14 -51.93 -0.42 0.98 15 27 H 0.06 1.42 8.14 -51.93 -0.42 0.99 15 28 H 0.26 7.17 8.31 -40.82 -0.34 6.83 15 LS Contribution 262.41 15.07 3.95 3.95 Total: -1.00 -31.66 262.41 -7.67 -39.32 By element: Atomic # 1 Polarization: 0.46 SS G_CDS: -2.30 Total: -1.85 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: -2.26 Total: -6.50 kcal Atomic # 7 Polarization: -40.58 SS G_CDS: 0.41 Total: -40.17 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.06 Total: -10.93 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: 2.14 SS G_CDS: -2.51 Total: -0.38 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -31.66 -7.67 -39.32 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259645004.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.728 kcal (2) G-P(sol) polarization free energy of solvation -31.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds