Wall clock time and date at job start Mon Mar 30 2020 05:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.31115 * 121.87052 * 2 1 4 4 S 1.75793 * 109.59068 * 179.97438 * 3 2 1 5 5 C 1.76409 * 90.62158 * 359.97438 * 4 3 2 6 6 N 1.33273 * 141.24054 * 180.02562 * 5 4 3 7 7 C 1.32219 * 109.89484 * 179.97438 * 6 5 4 8 8 C 1.38559 * 107.82764 * 0.02562 * 7 6 5 9 9 C 1.40433 * 126.88930 * 180.02562 * 8 7 6 10 10 O 1.21558 * 119.99841 * 186.38896 * 9 8 7 11 11 C 1.50700 * 119.99854 * 6.39092 * 9 8 7 12 12 C 1.50706 * 109.46856 * 179.97438 * 11 9 8 13 13 H 1.08000 * 119.99788 * 0.02562 * 12 11 9 14 14 C 1.37874 * 119.99713 * 179.97438 * 12 11 9 15 15 N 1.31516 * 120.00309 * 359.97438 * 14 12 11 16 16 Si 1.86807 * 119.99600 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47033 * 60.00207 * 16 14 12 18 18 H 1.48500 * 109.46960 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47077 * 299.99717 * 16 14 12 20 20 N 1.34155 * 109.20746 * 359.97438 * 5 4 3 21 21 H 1.09000 * 109.47241 * 97.04839 * 1 2 3 22 22 H 1.08998 * 109.47796 * 217.05257 * 1 2 3 23 23 H 1.09004 * 109.47165 * 337.05393 * 1 2 3 24 24 H 1.08001 * 125.20345 * 359.95699 * 3 2 1 25 25 H 1.07999 * 126.08274 * 179.97438 * 7 6 5 26 26 H 1.08991 * 109.47534 * 300.00006 * 11 9 8 27 27 H 1.09004 * 109.47178 * 60.00332 * 11 9 8 28 28 H 0.96997 * 119.99926 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1993 1.1135 0.0000 4 16 3.9170 0.7396 0.0007 5 6 3.5605 -0.9881 0.0018 6 7 4.1676 -2.1745 0.0031 7 6 3.2658 -3.1414 0.0038 8 6 2.0119 -2.5520 0.0022 9 6 0.7712 -3.2099 0.0028 10 8 -0.2558 -2.5705 -0.1159 11 6 0.7130 -4.7085 0.1505 12 6 -0.7243 -5.1608 0.1206 13 1 -1.5163 -4.4355 0.0056 14 6 -1.0279 -6.5004 0.2389 15 7 -0.0634 -7.3836 0.3774 16 14 -2.8095 -7.0611 0.2011 17 1 -3.4253 -6.6664 -1.0913 18 1 -2.8668 -8.5378 0.3468 19 1 -3.5525 -6.4247 1.3183 20 7 2.2306 -1.1643 0.0021 21 1 -0.3634 -0.1261 -1.0199 22 1 -0.3634 -0.8201 0.6192 23 1 -0.3634 0.9464 0.4007 24 1 1.7786 2.1082 -0.0007 25 1 3.4703 -4.2019 0.0045 26 1 1.2585 -5.1759 -0.6692 27 1 1.1649 -4.9978 1.0993 28 1 -0.2771 -8.3261 0.4610 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259645004.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:11 Heat of formation + Delta-G solvation = 38.182211 kcal Electronic energy + Delta-G solvation = -15604.338591 eV Core-core repulsion = 12940.945057 eV Total energy + Delta-G solvation = -2663.393533 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.90455 -39.88571 -38.27597 -35.10746 -32.50074 -32.26653 -30.65873 -28.75988 -26.23530 -24.61392 -23.35046 -22.45203 -19.64332 -19.20354 -18.47240 -17.58604 -16.93488 -16.88374 -16.17216 -16.08894 -15.53613 -15.09572 -14.71415 -14.43440 -14.26804 -13.85644 -13.51641 -13.18557 -12.77638 -12.60643 -12.45322 -12.34558 -12.04796 -11.55895 -11.53220 -11.43642 -10.61406 -10.39093 -10.05758 -8.76429 -8.23564 -6.31609 -0.65296 -0.33910 0.49079 0.62894 1.29886 1.34783 1.40927 1.42912 1.51612 2.11966 2.40940 3.11700 3.21302 3.40270 3.70515 3.99148 4.10447 4.40502 4.45409 4.59209 4.67080 4.91455 5.14381 5.20956 5.28015 5.28879 5.65617 5.72358 6.10943 6.32952 6.77448 6.86626 7.36693 8.88225 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.042655 B = 0.005731 C = 0.005075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.277318 B = 4884.845154 C = 5516.363152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.048 3.952 3 C -0.201 4.201 4 S 0.262 5.738 5 C 0.123 3.877 6 N -0.490 5.490 7 C 0.119 3.881 8 C -0.150 4.150 9 C 0.422 3.578 10 O -0.495 6.495 11 C -0.004 4.004 12 C -0.541 4.541 13 H 0.058 0.942 14 C 0.012 3.988 15 N -0.923 5.923 16 Si 0.962 3.038 17 H -0.272 1.272 18 H -0.276 1.276 19 H -0.272 1.272 20 N -0.374 5.374 21 H 0.071 0.929 22 H 0.068 0.932 23 H 0.120 0.880 24 H 0.247 0.753 25 H 0.216 0.784 26 H 0.050 0.950 27 H 0.048 0.952 28 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.372 18.145 -0.434 19.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.061 4.061 3 C -0.337 4.337 4 S 0.514 5.486 5 C -0.239 4.239 6 N -0.214 5.214 7 C -0.041 4.041 8 C -0.263 4.263 9 C 0.305 3.695 10 O -0.376 6.376 11 C -0.042 4.042 12 C -0.579 4.579 13 H 0.077 0.923 14 C -0.187 4.187 15 N -0.562 5.562 16 Si 0.787 3.213 17 H -0.197 1.197 18 H -0.201 1.201 19 H -0.197 1.197 20 N -0.050 5.050 21 H 0.089 0.911 22 H 0.086 0.914 23 H 0.138 0.862 24 H 0.263 0.737 25 H 0.233 0.767 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 7.827 19.053 -0.474 20.603 hybrid contribution -2.724 -1.691 -0.029 3.206 sum 5.104 17.361 -0.503 18.103 Atomic orbital electron populations 1.20905 0.85385 1.05216 1.03939 1.19718 0.97822 0.82777 1.05801 1.25578 0.95830 1.02783 1.09546 1.84423 1.02627 0.82792 1.78803 1.27472 0.83370 1.03929 1.09154 1.70284 1.32286 0.95209 1.23593 1.23689 0.85618 1.00248 0.94579 1.21355 0.99422 0.80046 1.25484 1.20683 0.85263 0.92934 0.70591 1.90383 1.38428 1.68741 1.40007 1.19287 0.98532 0.87366 0.99004 1.21350 0.92880 0.92891 1.50778 0.92329 1.25770 1.01888 0.96576 0.94500 1.70025 1.33676 1.02275 1.50268 0.85546 0.79726 0.77167 0.78869 1.19713 1.20132 1.19709 1.43828 1.07709 1.06128 1.47359 0.91058 0.91381 0.86153 0.73658 0.76728 0.93182 0.93452 0.92397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.56 8.76 71.24 0.62 -1.93 15 2 C 0.05 1.32 6.75 41.58 0.28 1.60 15 3 C -0.20 -3.45 10.80 67.67 0.73 -2.72 15 4 S 0.26 5.06 23.38 -56.49 -1.32 3.74 15 5 C 0.12 3.93 8.89 179.72 1.60 5.53 15 6 N -0.49 -17.42 11.24 -194.71 -2.19 -19.61 15 7 C 0.12 4.33 11.34 84.71 0.96 5.29 15 8 C -0.15 -6.04 6.89 38.37 0.26 -5.78 15 9 C 0.42 19.71 6.90 26.22 0.18 19.89 15 10 O -0.50 -24.34 11.90 -3.90 -0.05 -24.39 15 11 C 0.00 -0.22 4.75 29.10 0.14 -0.08 15 12 C -0.54 -31.34 8.92 25.60 0.23 -31.11 15 13 H 0.06 3.49 6.75 -2.91 -0.02 3.47 15 14 C 0.01 0.66 5.46 84.65 0.46 1.12 15 15 N -0.92 -53.85 13.29 21.45 0.28 -53.56 15 16 Si 0.96 44.77 29.54 68.60 2.03 46.79 15 17 H -0.27 -12.40 7.11 99.48 0.71 -11.69 15 18 H -0.28 -12.28 7.11 99.48 0.71 -11.58 15 19 H -0.27 -12.38 7.11 99.48 0.71 -11.68 15 20 N -0.37 -13.02 3.19 -334.63 -1.07 -14.08 15 21 H 0.07 2.02 8.14 -2.39 -0.02 2.00 15 22 H 0.07 2.41 5.53 -2.39 -0.01 2.40 15 23 H 0.12 2.03 8.06 -2.39 -0.02 2.02 15 24 H 0.25 1.59 8.06 -2.91 -0.02 1.56 15 25 H 0.22 6.88 7.95 -2.91 -0.02 6.86 15 26 H 0.05 2.61 8.14 -2.39 -0.02 2.59 15 27 H 0.05 2.49 8.14 -2.39 -0.02 2.47 15 28 H 0.27 14.68 8.31 -92.71 -0.77 13.91 15 Total: -1.00 -71.32 262.41 4.35 -66.97 By element: Atomic # 1 Polarization: 1.14 SS G_CDS: 1.19 Total: 2.33 kcal Atomic # 6 Polarization: -13.66 SS G_CDS: 5.47 Total: -8.20 kcal Atomic # 7 Polarization: -84.28 SS G_CDS: -2.97 Total: -87.25 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: -0.05 Total: -24.39 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.79 kcal Atomic # 16 Polarization: 5.06 SS G_CDS: -1.32 Total: 3.74 kcal Total: -71.32 4.35 -66.97 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259645004.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.149 kcal (2) G-P(sol) polarization free energy of solvation -71.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds