Wall clock time and date at job start Mon Mar 30 2020 05:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21493 * 120.00031 * 2 1 4 4 C 1.40927 * 120.00001 * 179.97438 * 2 1 3 5 5 C 1.36502 * 124.99357 * 180.02562 * 4 2 1 6 6 C 1.38221 * 115.04852 * 180.02562 * 5 4 2 7 7 C 1.38477 * 113.71083 * 0.02562 * 6 5 4 8 8 N 1.34982 * 107.84484 * 179.97438 * 7 6 5 9 9 C 1.30242 * 109.90337 * 359.74532 * 8 7 6 10 10 C 1.50704 * 125.15253 * 180.27261 * 9 8 7 11 11 N 1.35925 * 109.69997 * 0.41825 * 9 8 7 12 12 C 1.37220 * 126.52434 * 179.85654 * 11 9 8 13 13 H 1.07996 * 120.00101 * 329.48269 * 12 11 9 14 14 C 1.38977 * 119.99870 * 149.76163 * 12 11 9 15 15 N 1.31334 * 120.00148 * 341.96641 * 14 12 11 16 16 Si 1.86800 * 120.00022 * 161.97037 * 14 12 11 17 17 H 1.48497 * 109.47480 * 0.02562 * 16 14 12 18 18 H 1.48509 * 109.47230 * 119.99757 * 16 14 12 19 19 H 1.48499 * 109.47311 * 239.99546 * 16 14 12 20 20 S 1.75619 * 124.99618 * 0.02562 * 4 2 1 21 21 H 1.09005 * 109.47334 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47886 * 300.00617 * 1 2 3 23 23 H 1.09000 * 109.46814 * 60.01163 * 1 2 3 24 24 H 1.08002 * 122.47787 * 0.02708 * 5 4 2 25 25 H 1.09004 * 109.46770 * 266.98816 * 10 9 8 26 26 H 1.08999 * 109.47111 * 26.97805 * 10 9 8 27 27 H 1.08994 * 109.47493 * 146.98230 * 10 9 8 28 28 H 0.97000 * 120.00529 * 177.28296 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1144 1.0522 0.0000 4 6 2.2116 -1.2205 0.0005 5 6 3.5714 -1.3393 0.0011 6 6 4.0454 -2.6377 0.0010 7 6 3.0454 -3.5955 -0.0002 8 7 3.6354 -4.8096 -0.0007 9 6 4.9307 -4.6730 -0.0054 10 6 5.9227 -5.8075 -0.0133 11 7 5.2522 -3.3524 0.0012 12 6 6.5168 -2.8197 0.0018 13 1 7.3281 -3.3552 0.4724 14 6 6.7525 -1.5884 -0.5981 15 7 5.8871 -1.1000 -1.4568 16 14 8.3001 -0.6282 -0.1831 17 1 9.1062 -1.3908 0.8038 18 1 9.0987 -0.4188 -1.4175 19 1 7.9263 0.6881 0.3938 20 16 1.4693 -2.8121 0.0006 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3635 0.5139 0.8899 23 1 -0.3633 0.5137 -0.8901 24 1 4.2285 -0.4821 0.0016 25 1 6.2066 -6.0490 1.0111 26 1 5.4707 -6.6822 -0.4807 27 1 6.8083 -5.5118 -0.5757 28 1 6.0317 -0.2232 -1.8456 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259677086.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:24 Heat of formation + Delta-G solvation = 32.266243 kcal Electronic energy + Delta-G solvation = -15813.041181 eV Core-core repulsion = 13149.391112 eV Total energy + Delta-G solvation = -2663.650069 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.84433 -38.69322 -34.49215 -34.32279 -31.30809 -30.62065 -29.51673 -26.07885 -25.39274 -22.88016 -20.63863 -20.01778 -18.30208 -17.65308 -16.27615 -15.23401 -14.89645 -14.78024 -14.63951 -14.27790 -14.20174 -13.32691 -12.62317 -12.43030 -12.24836 -12.06510 -11.83268 -11.73108 -11.66476 -11.45529 -11.26323 -10.69928 -10.40694 -10.15231 -9.81174 -9.26537 -8.98628 -8.93196 -7.35945 -7.02359 -6.88552 -4.76580 1.22394 2.27555 2.76943 2.89014 2.91922 2.96568 3.09943 3.59112 3.75334 3.99024 4.28619 4.53550 4.91508 5.44079 5.50287 5.71120 5.91317 5.93575 6.12091 6.13203 6.32455 6.37138 6.45872 6.63502 6.81096 6.98302 7.16666 7.44782 7.82328 8.18746 8.30838 8.88474 9.07546 9.90065 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.019509 B = 0.010450 C = 0.006993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.890830 B = 2678.807427 C = 4002.848262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.429 3.571 3 O -0.490 6.490 4 C -0.349 4.349 5 C 0.094 3.906 6 C -0.046 4.046 7 C -0.032 4.032 8 N -0.487 5.487 9 C 0.172 3.828 10 C -0.049 4.049 11 N -0.233 5.233 12 C -0.348 4.348 13 H 0.120 0.880 14 C 0.054 3.946 15 N -0.804 5.804 16 Si 0.935 3.065 17 H -0.259 1.259 18 H -0.271 1.271 19 H -0.267 1.267 20 S 0.124 5.876 21 H 0.075 0.925 22 H 0.088 0.912 23 H 0.088 0.912 24 H 0.141 0.859 25 H 0.065 0.935 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.574 -0.933 1.964 3.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.313 3.687 3 O -0.372 6.372 4 C -0.466 4.466 5 C 0.061 3.939 6 C -0.164 4.164 7 C -0.282 4.282 8 N -0.211 5.211 9 C -0.088 4.088 10 C -0.108 4.108 11 N 0.101 4.899 12 C -0.478 4.478 13 H 0.138 0.862 14 C -0.162 4.162 15 N -0.431 5.431 16 Si 0.758 3.242 17 H -0.182 1.182 18 H -0.196 1.196 19 H -0.192 1.192 20 S 0.375 5.625 21 H 0.093 0.907 22 H 0.107 0.893 23 H 0.107 0.893 24 H 0.158 0.842 25 H 0.084 0.916 26 H 0.096 0.904 27 H 0.092 0.908 28 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.894 -1.463 1.780 4.524 hybrid contribution 2.576 1.636 -0.072 3.052 sum -1.318 0.174 1.708 2.165 Atomic orbital electron populations 1.22145 0.94950 1.03737 1.04166 1.19739 0.90813 0.86640 0.71542 1.90558 1.72018 1.33884 1.40716 1.22845 0.96953 0.98211 1.28639 1.19635 0.92776 0.95460 0.86034 1.18337 0.85959 0.93097 1.18980 1.23635 0.97096 0.93978 1.13528 1.69529 1.04259 1.22758 1.24525 1.23034 0.91257 0.84629 1.09876 1.19932 0.95548 0.93219 1.02088 1.41416 1.04490 1.04081 1.39926 1.20036 0.84520 1.05389 1.37807 0.86236 1.25741 1.00346 0.97447 0.92693 1.69937 1.36217 1.17770 1.19211 0.85739 0.79541 0.79623 0.79308 1.18224 1.19569 1.19215 1.82756 1.01993 0.94862 1.82908 0.90660 0.89345 0.89333 0.84156 0.91596 0.90449 0.90802 0.89932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.72 10.26 36.00 0.37 -2.36 15 2 C 0.43 8.43 7.03 -33.29 -0.23 8.20 15 3 O -0.49 -11.05 17.40 5.37 0.09 -10.95 15 4 C -0.35 -7.58 6.17 -39.19 -0.24 -7.83 15 5 C 0.09 2.33 8.49 -40.21 -0.34 1.99 15 6 C -0.05 -1.18 6.26 -83.92 -0.53 -1.71 15 7 C -0.03 -0.78 8.36 -16.08 -0.13 -0.92 15 8 N -0.49 -12.04 11.23 -8.84 -0.10 -12.14 15 9 C 0.17 4.06 7.84 -154.82 -1.21 2.84 15 10 C -0.05 -0.87 10.11 36.01 0.36 -0.51 15 11 N -0.23 -5.94 2.91 -56.95 -0.17 -6.10 15 12 C -0.35 -8.44 9.44 -14.87 -0.14 -8.58 15 13 H 0.12 2.64 7.88 -52.49 -0.41 2.22 15 14 C 0.05 1.28 5.16 -17.49 -0.09 1.19 15 15 N -0.80 -20.35 10.31 55.50 0.57 -19.78 15 16 Si 0.94 17.85 29.59 -169.99 -5.03 12.82 15 17 H -0.26 -4.73 7.11 56.52 0.40 -4.33 15 18 H -0.27 -5.09 7.11 56.52 0.40 -4.69 15 19 H -0.27 -5.18 7.11 56.52 0.40 -4.78 15 20 S 0.12 2.51 21.66 -107.50 -2.33 0.18 15 21 H 0.07 0.99 6.54 -51.93 -0.34 0.65 15 22 H 0.09 1.08 8.14 -51.93 -0.42 0.66 15 23 H 0.09 1.11 8.14 -51.93 -0.42 0.69 15 24 H 0.14 3.62 6.73 -52.49 -0.35 3.27 15 25 H 0.07 1.03 8.14 -51.93 -0.42 0.61 15 26 H 0.08 1.23 8.14 -51.93 -0.42 0.80 15 27 H 0.07 1.24 7.88 -51.93 -0.41 0.83 15 28 H 0.29 6.82 8.31 -40.82 -0.34 6.48 15 LS Contribution 263.44 15.07 3.97 3.97 Total: -1.00 -29.75 263.44 -7.52 -37.26 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -2.34 Total: 2.41 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: -2.19 Total: -7.67 kcal Atomic # 7 Polarization: -38.33 SS G_CDS: 0.31 Total: -38.02 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.09 Total: -10.95 kcal Atomic # 14 Polarization: 17.85 SS G_CDS: -5.03 Total: 12.82 kcal Atomic # 16 Polarization: 2.51 SS G_CDS: -2.33 Total: 0.18 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -29.75 -7.52 -37.26 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259677086.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.529 kcal (2) G-P(sol) polarization free energy of solvation -29.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds