Wall clock time and date at job start Mon Mar 30 2020 05:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21493 * 120.00031 * 2 1 4 4 C 1.40927 * 120.00001 * 179.97438 * 2 1 3 5 5 C 1.36502 * 124.99357 * 180.02562 * 4 2 1 6 6 C 1.38221 * 115.04852 * 180.02562 * 5 4 2 7 7 C 1.38477 * 113.71083 * 0.02562 * 6 5 4 8 8 N 1.34982 * 107.84484 * 179.97438 * 7 6 5 9 9 C 1.30242 * 109.90337 * 359.74532 * 8 7 6 10 10 C 1.50704 * 125.15253 * 180.27261 * 9 8 7 11 11 N 1.35925 * 109.69997 * 0.41825 * 9 8 7 12 12 C 1.37220 * 126.52434 * 179.85654 * 11 9 8 13 13 H 1.07996 * 120.00101 * 329.48269 * 12 11 9 14 14 C 1.38977 * 119.99870 * 149.76163 * 12 11 9 15 15 N 1.31334 * 120.00148 * 341.96641 * 14 12 11 16 16 Si 1.86800 * 120.00022 * 161.97037 * 14 12 11 17 17 H 1.48497 * 109.47480 * 0.02562 * 16 14 12 18 18 H 1.48509 * 109.47230 * 119.99757 * 16 14 12 19 19 H 1.48499 * 109.47311 * 239.99546 * 16 14 12 20 20 S 1.75619 * 124.99618 * 0.02562 * 4 2 1 21 21 H 1.09005 * 109.47334 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47886 * 300.00617 * 1 2 3 23 23 H 1.09000 * 109.46814 * 60.01163 * 1 2 3 24 24 H 1.08002 * 122.47787 * 0.02708 * 5 4 2 25 25 H 1.09004 * 109.46770 * 266.98816 * 10 9 8 26 26 H 1.08999 * 109.47111 * 26.97805 * 10 9 8 27 27 H 1.08994 * 109.47493 * 146.98230 * 10 9 8 28 28 H 0.97000 * 120.00529 * 177.28296 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1144 1.0522 0.0000 4 6 2.2116 -1.2205 0.0005 5 6 3.5714 -1.3393 0.0011 6 6 4.0454 -2.6377 0.0010 7 6 3.0454 -3.5955 -0.0002 8 7 3.6354 -4.8096 -0.0007 9 6 4.9307 -4.6730 -0.0054 10 6 5.9227 -5.8075 -0.0133 11 7 5.2522 -3.3524 0.0012 12 6 6.5168 -2.8197 0.0018 13 1 7.3281 -3.3552 0.4724 14 6 6.7525 -1.5884 -0.5981 15 7 5.8871 -1.1000 -1.4568 16 14 8.3001 -0.6282 -0.1831 17 1 9.1062 -1.3908 0.8038 18 1 9.0987 -0.4188 -1.4175 19 1 7.9263 0.6881 0.3938 20 16 1.4693 -2.8121 0.0006 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3635 0.5139 0.8899 23 1 -0.3633 0.5137 -0.8901 24 1 4.2285 -0.4821 0.0016 25 1 6.2066 -6.0490 1.0111 26 1 5.4707 -6.6822 -0.4807 27 1 6.8083 -5.5118 -0.5757 28 1 6.0317 -0.2232 -1.8456 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259677086.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:23 Heat of formation + Delta-G solvation = 14.741782 kcal Electronic energy + Delta-G solvation = -15813.801098 eV Core-core repulsion = 13149.391112 eV Total energy + Delta-G solvation = -2664.409986 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.63313 -40.34752 -36.27082 -36.10046 -33.11507 -32.14888 -30.94794 -27.74071 -27.13442 -24.62912 -22.33950 -21.79155 -20.01543 -19.39082 -18.04905 -16.90189 -16.57342 -16.43537 -16.33085 -15.90771 -15.84283 -14.98001 -14.30226 -14.02848 -13.73004 -13.51119 -13.33884 -13.15306 -13.05956 -13.03242 -12.90551 -12.21732 -12.06682 -11.89570 -11.59274 -10.88669 -10.79463 -10.77493 -9.11385 -8.82039 -8.60514 -6.60731 -0.53597 0.54913 1.13114 1.17895 1.32225 1.48270 1.49501 1.94920 2.01943 2.19508 2.57970 2.76349 3.43329 3.82214 4.20317 4.25039 4.54905 4.58071 4.65821 4.66745 4.79117 4.91076 4.95960 5.02153 5.07521 5.27246 5.38317 5.69011 6.00645 6.52172 6.61279 7.09167 7.27117 8.15245 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.019509 B = 0.010450 C = 0.006993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.890830 B = 2678.807427 C = 4002.848262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.426 3.574 3 O -0.522 6.522 4 C -0.348 4.348 5 C 0.057 3.943 6 C -0.072 4.072 7 C -0.071 4.071 8 N -0.505 5.505 9 C 0.165 3.835 10 C -0.046 4.046 11 N -0.257 5.257 12 C -0.372 4.372 13 H 0.136 0.864 14 C 0.013 3.987 15 N -0.845 5.845 16 Si 1.006 2.994 17 H -0.241 1.241 18 H -0.265 1.265 19 H -0.276 1.276 20 S 0.214 5.786 21 H 0.087 0.913 22 H 0.116 0.884 23 H 0.112 0.888 24 H 0.117 0.883 25 H 0.089 0.911 26 H 0.095 0.905 27 H 0.080 0.920 28 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.423 -1.278 2.430 4.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.310 3.690 3 O -0.405 6.405 4 C -0.466 4.466 5 C 0.022 3.978 6 C -0.190 4.190 7 C -0.320 4.320 8 N -0.230 5.230 9 C -0.096 4.096 10 C -0.104 4.104 11 N 0.076 4.924 12 C -0.501 4.501 13 H 0.153 0.847 14 C -0.199 4.199 15 N -0.473 5.473 16 Si 0.825 3.175 17 H -0.164 1.164 18 H -0.189 1.189 19 H -0.201 1.201 20 S 0.466 5.534 21 H 0.106 0.894 22 H 0.134 0.866 23 H 0.130 0.870 24 H 0.135 0.865 25 H 0.107 0.893 26 H 0.114 0.886 27 H 0.099 0.901 28 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.768 -1.845 2.250 5.586 hybrid contribution 2.685 1.726 -0.214 3.199 sum -2.083 -0.119 2.036 2.915 Atomic orbital electron populations 1.22153 0.89711 1.05346 1.06583 1.20573 0.93446 0.85078 0.69881 1.90549 1.73426 1.34773 1.41785 1.23478 0.96541 1.00690 1.25870 1.19567 0.93915 0.94614 0.89660 1.18765 0.86862 0.93822 1.19561 1.24436 0.99540 0.94010 1.14058 1.69568 1.04998 1.22737 1.25662 1.24169 0.92095 0.85434 1.07907 1.20137 0.94537 0.91838 1.03914 1.41730 1.04832 1.04770 1.41098 1.20521 0.84781 1.06332 1.38487 0.84652 1.26749 1.03231 0.97961 0.91957 1.70045 1.38409 1.18107 1.20784 0.84708 0.75807 0.77565 0.79422 1.16371 1.18937 1.20118 1.82234 0.98453 0.91777 1.80926 0.89380 0.86616 0.86952 0.86527 0.89256 0.88585 0.90123 0.90108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.45 10.26 71.23 0.73 -3.72 15 2 C 0.43 16.19 7.03 26.34 0.19 16.38 15 3 O -0.52 -23.52 17.40 -3.69 -0.06 -23.58 15 4 C -0.35 -15.04 6.17 22.52 0.14 -14.90 15 5 C 0.06 2.91 8.49 21.86 0.19 3.09 15 6 C -0.07 -3.84 6.26 37.85 0.24 -3.61 15 7 C -0.07 -3.55 8.36 84.27 0.70 -2.84 15 8 N -0.50 -24.98 11.23 -181.89 -2.04 -27.02 15 9 C 0.16 7.77 7.84 137.92 1.08 8.85 15 10 C -0.05 -1.56 10.11 71.24 0.72 -0.84 15 11 N -0.26 -13.39 2.91 -334.10 -0.97 -14.36 15 12 C -0.37 -18.39 9.44 84.03 0.79 -17.59 15 13 H 0.14 5.96 7.88 -2.91 -0.02 5.94 15 14 C 0.01 0.62 5.16 84.94 0.44 1.06 15 15 N -0.84 -44.60 10.31 21.66 0.22 -44.38 15 16 Si 1.01 37.08 29.59 68.60 2.03 39.11 15 17 H -0.24 -8.10 7.11 99.48 0.71 -7.39 15 18 H -0.26 -9.40 7.11 99.48 0.71 -8.69 15 19 H -0.28 -10.43 7.11 99.48 0.71 -9.72 15 20 S 0.21 8.30 21.66 -56.49 -1.22 7.08 15 21 H 0.09 1.94 6.54 -2.38 -0.02 1.92 15 22 H 0.12 2.32 8.14 -2.39 -0.02 2.30 15 23 H 0.11 2.34 8.14 -2.39 -0.02 2.32 15 24 H 0.12 6.41 6.73 -2.91 -0.02 6.39 15 25 H 0.09 2.61 8.14 -2.38 -0.02 2.59 15 26 H 0.10 2.87 8.14 -2.39 -0.02 2.85 15 27 H 0.08 2.62 7.88 -2.39 -0.02 2.60 15 28 H 0.29 14.29 8.31 -92.71 -0.77 13.52 15 Total: -1.00 -67.01 263.44 4.36 -62.65 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: 1.20 Total: 14.63 kcal Atomic # 6 Polarization: -19.34 SS G_CDS: 5.21 Total: -14.13 kcal Atomic # 7 Polarization: -82.96 SS G_CDS: -2.79 Total: -85.76 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -0.06 Total: -23.58 kcal Atomic # 14 Polarization: 37.08 SS G_CDS: 2.03 Total: 39.11 kcal Atomic # 16 Polarization: 8.30 SS G_CDS: -1.22 Total: 7.08 kcal Total: -67.01 4.36 -62.65 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259677086.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.390 kcal (2) G-P(sol) polarization free energy of solvation -67.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds