Wall clock time and date at job start Mon Mar 30 2020 05:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.33996 * 126.50355 * 2 1 4 4 N 1.20757 * 113.06404 * 180.25918 * 3 2 1 5 5 C 1.31608 * 111.48189 * 359.76533 * 4 3 2 6 6 C 1.47327 * 127.40733 * 179.97438 * 5 4 3 7 7 S 1.72012 * 127.40690 * 179.70841 * 6 5 4 8 8 N 1.69393 * 96.23908 * 179.91184 * 7 6 5 9 9 C 1.29278 * 108.40393 * 0.36713 * 8 7 6 10 10 C 1.39826 * 117.05593 * 359.72849 * 9 8 7 11 11 C 1.40808 * 123.44676 * 179.97438 * 10 9 8 12 12 H 1.08003 * 120.00677 * 158.02158 * 11 10 9 13 13 C 1.39992 * 119.99967 * 338.02377 * 11 10 9 14 14 N 1.30861 * 119.99918 * 345.54999 * 13 11 10 15 15 Si 1.86805 * 120.00165 * 165.54694 * 13 11 10 16 16 H 1.48492 * 109.46902 * 90.00015 * 15 13 11 17 17 H 1.48506 * 109.46969 * 210.00325 * 15 13 11 18 18 H 1.48505 * 109.47108 * 329.99995 * 15 13 11 19 19 C 1.35195 * 126.50381 * 179.85125 * 2 1 3 20 20 C 1.50697 * 128.36456 * 0.03768 * 19 2 1 21 21 H 1.08997 * 109.47331 * 270.14562 * 1 2 3 22 22 H 1.08998 * 109.47150 * 30.15387 * 1 2 3 23 23 H 1.09004 * 109.46871 * 150.14663 * 1 2 3 24 24 H 1.07994 * 121.47573 * 179.71272 * 9 8 7 25 25 H 0.96999 * 120.00460 * 180.02562 * 14 13 11 26 26 H 1.09009 * 109.47067 * 269.67647 * 20 19 2 27 27 H 1.09001 * 109.47356 * 149.68066 * 20 19 2 28 28 H 1.08996 * 109.47469 * 29.67531 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3041 1.0771 0.0000 4 7 3.4786 0.7964 -0.0050 5 6 3.6627 -0.5067 -0.0042 6 6 4.9467 -1.2291 -0.0097 7 16 5.1874 -2.9323 -0.0016 8 7 6.8804 -2.8790 -0.0173 9 6 7.2498 -1.6402 -0.0202 10 6 6.2382 -0.6749 -0.0163 11 6 6.4878 0.7109 -0.0183 12 1 5.7284 1.3960 -0.3654 13 6 7.7203 1.2008 0.4297 14 7 8.5266 0.4232 1.1062 15 14 8.2141 2.9643 0.0615 16 1 7.7451 3.8488 1.1582 17 1 9.6926 3.0520 -0.0472 18 1 7.5973 3.3941 -1.2192 19 6 2.3112 -1.0867 0.0028 20 6 1.9178 -2.5414 0.0058 21 1 -0.3634 0.0026 1.0276 22 1 -0.3633 0.8886 -0.5162 23 1 -0.3633 -0.8913 -0.5116 24 1 8.2935 -1.3629 -0.0251 25 1 9.3804 0.7626 1.4170 26 1 1.8281 -2.8914 1.0343 27 1 2.6796 -3.1249 -0.5113 28 1 0.9614 -2.6603 -0.5032 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259679390.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:08 Heat of formation + Delta-G solvation = 54.614985 kcal Electronic energy + Delta-G solvation = -15653.355185 eV Core-core repulsion = 12990.674230 eV Total energy + Delta-G solvation = -2662.680955 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -45.27971 -39.30760 -35.76346 -35.52544 -34.22746 -31.62632 -29.85852 -28.36405 -27.44489 -25.06313 -22.91947 -21.97396 -20.40192 -19.04353 -18.32684 -17.65288 -17.27477 -17.00552 -15.81261 -14.93220 -14.78535 -14.71374 -14.27236 -14.12591 -13.75260 -13.65373 -13.35265 -13.16754 -13.02124 -12.84994 -12.82758 -12.20597 -12.02282 -11.64152 -11.36006 -11.22557 -10.90293 -9.83653 -9.51036 -9.30987 -8.98030 -6.46973 -0.11565 0.86910 1.20510 1.26429 1.33404 1.47284 1.54246 1.64110 2.08422 2.13402 2.56546 3.07723 3.58684 3.79154 4.09147 4.39003 4.54442 4.72976 4.77152 4.80839 4.87197 4.90825 5.01572 5.07898 5.11047 5.26213 5.46332 5.59868 5.83532 6.18859 6.47172 6.59265 7.83228 8.00598 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.021399 B = 0.009103 C = 0.006494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.128431 B = 3075.297362 C = 4310.532873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.042 4.042 3 O 0.063 5.937 4 N -0.408 5.408 5 C 0.121 3.879 6 C -0.362 4.362 7 S 0.169 5.831 8 N -0.492 5.492 9 C 0.113 3.887 10 C 0.027 3.973 11 C -0.402 4.402 12 H 0.088 0.912 13 C 0.035 3.965 14 N -0.801 5.801 15 Si 0.994 3.006 16 H -0.262 1.262 17 H -0.249 1.249 18 H -0.262 1.262 19 C -0.233 4.233 20 C -0.066 4.066 21 H 0.101 0.899 22 H 0.094 0.906 23 H 0.109 0.891 24 H 0.185 0.815 25 H 0.305 0.695 26 H 0.076 0.924 27 H 0.057 0.943 28 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.109 0.264 -1.367 10.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.104 4.104 3 O 0.004 5.996 4 N -0.121 5.121 5 C -0.035 4.035 6 C -0.489 4.489 7 S 0.318 5.682 8 N -0.308 5.308 9 C -0.094 4.094 10 C 0.011 3.989 11 C -0.437 4.437 12 H 0.106 0.894 13 C -0.184 4.184 14 N -0.427 5.427 15 Si 0.813 3.187 16 H -0.187 1.187 17 H -0.172 1.172 18 H -0.185 1.185 19 C -0.237 4.237 20 C -0.123 4.123 21 H 0.119 0.881 22 H 0.113 0.887 23 H 0.127 0.873 24 H 0.201 0.799 25 H 0.117 0.883 26 H 0.095 0.905 27 H 0.076 0.924 28 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -9.449 -0.948 -1.233 9.577 hybrid contribution 0.881 1.784 0.067 1.990 sum -8.569 0.836 -1.166 8.688 Atomic orbital electron populations 1.20499 0.80291 1.05828 1.05186 1.24811 0.97667 0.85303 1.02619 1.84532 1.11306 1.34089 1.69686 1.74314 0.95614 1.16613 1.25579 1.21954 0.92640 0.88610 1.00290 1.21609 0.92950 0.97261 1.37127 1.82127 1.03123 1.04072 1.78869 1.75919 1.07682 1.23693 1.23521 1.23310 1.02578 0.87454 0.96037 1.18534 0.89146 0.96371 0.94809 1.19716 0.99844 0.91602 1.32506 0.89367 1.27028 0.94469 1.05565 0.91357 1.69659 1.10052 1.39935 1.23007 0.85006 0.78887 0.74853 0.79953 1.18689 1.17244 1.18542 1.22418 0.89616 0.99238 1.12447 1.20128 1.02305 0.86885 1.02972 0.88097 0.88748 0.87261 0.79886 0.88299 0.90537 0.92411 0.87849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.10 10.30 71.24 0.73 -0.37 15 2 C -0.04 -1.39 7.46 24.98 0.19 -1.20 15 3 O 0.06 2.61 11.09 72.25 0.80 3.41 15 4 N -0.41 -20.29 10.38 -45.97 -0.48 -20.77 15 5 C 0.12 6.00 7.31 43.89 0.32 6.32 15 6 C -0.36 -19.19 6.61 25.23 0.17 -19.02 15 7 S 0.17 7.94 21.48 -56.49 -1.21 6.72 15 8 N -0.49 -25.00 11.96 -59.86 -0.72 -25.72 15 9 C 0.11 5.97 10.01 85.45 0.86 6.83 15 10 C 0.03 1.47 5.58 -21.70 -0.12 1.35 15 11 C -0.40 -21.85 8.78 23.32 0.20 -21.64 15 12 H 0.09 4.96 6.45 -2.91 -0.02 4.94 15 13 C 0.04 1.68 5.32 85.26 0.45 2.14 15 14 N -0.80 -38.48 10.89 21.84 0.24 -38.24 15 15 Si 0.99 36.89 29.58 68.60 2.03 38.92 15 16 H -0.26 -9.62 7.11 99.48 0.71 -8.91 15 17 H -0.25 -8.27 7.11 99.48 0.71 -7.56 15 18 H -0.26 -9.88 7.11 99.48 0.71 -9.17 15 19 C -0.23 -8.83 6.54 -18.25 -0.12 -8.95 15 20 C -0.07 -1.90 9.87 71.23 0.70 -1.20 15 21 H 0.10 1.47 8.14 -2.39 -0.02 1.45 15 22 H 0.09 1.41 8.14 -2.39 -0.02 1.39 15 23 H 0.11 1.45 7.43 -2.38 -0.02 1.43 15 24 H 0.18 9.42 6.26 -2.91 -0.02 9.40 15 25 H 0.31 12.84 8.30 -92.71 -0.77 12.07 15 26 H 0.08 2.05 8.14 -2.38 -0.02 2.03 15 27 H 0.06 1.85 6.33 -2.39 -0.02 1.84 15 28 H 0.10 2.11 7.44 -2.39 -0.02 2.09 15 Total: -1.00 -65.68 261.11 5.25 -60.43 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: 1.21 Total: 10.99 kcal Atomic # 6 Polarization: -39.13 SS G_CDS: 3.38 Total: -35.75 kcal Atomic # 7 Polarization: -83.77 SS G_CDS: -0.96 Total: -84.72 kcal Atomic # 8 Polarization: 2.61 SS G_CDS: 0.80 Total: 3.41 kcal Atomic # 14 Polarization: 36.89 SS G_CDS: 2.03 Total: 38.92 kcal Atomic # 16 Polarization: 7.94 SS G_CDS: -1.21 Total: 6.72 kcal Total: -65.68 5.25 -60.43 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259679390.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.042 kcal (2) G-P(sol) polarization free energy of solvation -65.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds