Wall clock time and date at job start Mon Mar 30 2020 05:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29029 * 124.91242 * 2 1 4 4 C 1.31789 * 117.12138 * 180.22879 * 3 2 1 5 5 C 1.50705 * 122.74872 * 179.75469 * 4 3 2 6 6 C 1.50696 * 109.46880 * 304.71126 * 5 4 3 7 7 N 1.30803 * 125.15428 * 89.98097 * 6 5 4 8 8 C 1.33332 * 109.25212 * 180.02562 * 7 6 5 9 9 C 1.39417 * 107.08135 * 0.24068 * 8 7 6 10 10 C 1.39854 * 126.87065 * 179.72401 * 9 8 7 11 11 H 1.08002 * 119.99657 * 359.97438 * 10 9 8 12 12 C 1.40166 * 119.99981 * 179.97438 * 10 9 8 13 13 N 1.30799 * 120.00086 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 119.99776 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47422 * 89.99846 * 14 12 10 16 16 H 1.48496 * 109.47198 * 209.99877 * 14 12 10 17 17 H 1.48506 * 109.47416 * 329.99966 * 14 12 10 18 18 O 1.34015 * 125.15467 * 269.99722 * 6 5 4 19 19 C 1.33639 * 114.49917 * 359.48518 * 4 3 2 20 20 S 1.70977 * 124.91903 * 179.70133 * 2 1 3 21 21 H 1.08999 * 109.46938 * 180.27870 * 1 2 3 22 22 H 1.09000 * 109.47225 * 300.27273 * 1 2 3 23 23 H 1.08999 * 109.47030 * 60.27991 * 1 2 3 24 24 H 1.08996 * 109.46594 * 184.70835 * 5 4 3 25 25 H 1.08999 * 109.46657 * 64.70930 * 5 4 3 26 26 H 1.08002 * 126.45423 * 179.97438 * 8 7 6 27 27 H 0.96993 * 119.99844 * 180.02562 * 13 12 10 28 28 H 1.07999 * 126.03651 * 180.26709 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0581 0.0000 4 6 3.5512 0.8794 -0.0047 5 6 4.5307 2.0247 -0.0107 6 6 4.2378 2.9300 -1.1793 7 7 3.4254 3.9548 -1.1530 8 6 3.4032 4.5293 -2.3560 9 6 4.2612 3.7969 -3.1754 10 6 4.5425 4.0378 -4.5240 11 1 4.0723 4.8656 -5.0341 12 6 5.4345 3.2050 -5.2134 13 7 6.0042 2.2029 -4.5954 14 14 5.8096 3.5264 -7.0149 15 1 6.9721 4.4441 -7.1225 16 1 6.1279 2.2431 -7.6909 17 1 4.6270 4.1476 -7.6637 18 8 4.7700 2.8069 -2.4031 19 6 3.9354 -0.4005 0.0021 20 16 2.4857 -1.4019 0.0073 21 1 -0.3633 -1.0277 0.0050 22 1 -0.3634 0.5181 0.8875 23 1 -0.3633 0.5095 -0.8925 24 1 5.5448 1.6349 -0.0982 25 1 4.4367 2.5879 0.9178 26 1 2.8258 5.3957 -2.6429 27 1 6.6218 1.6268 -5.0725 28 1 4.9546 -0.7579 0.0039 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259704164.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:45 Heat of formation + Delta-G solvation = 17.636931 kcal Electronic energy + Delta-G solvation = -15405.820745 eV Core-core repulsion = 12741.536302 eV Total energy + Delta-G solvation = -2664.284443 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.95156 -40.77334 -35.90184 -34.70562 -34.28356 -31.86701 -30.19646 -28.84910 -26.16832 -23.90464 -22.53461 -21.86935 -20.63897 -19.47454 -18.62254 -17.26693 -16.86998 -16.51515 -16.06809 -15.91744 -15.23490 -14.67132 -14.57590 -14.17397 -13.94013 -13.38787 -13.29567 -13.04738 -13.00501 -12.94375 -12.77350 -12.34647 -12.04285 -11.54863 -11.38201 -10.80878 -10.49899 -10.31411 -9.64947 -9.45276 -8.87278 -6.60250 -0.22054 0.47412 0.72521 1.07554 1.35494 1.53018 1.62135 1.81882 2.12709 2.30453 2.77406 3.08822 3.22479 3.91078 4.03000 4.22969 4.38564 4.51523 4.60151 4.64662 4.75054 4.95198 4.98352 4.99749 5.14821 5.24980 5.57861 6.06044 6.26965 6.46290 6.56215 6.91635 7.68313 8.15188 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.027776 B = 0.006024 C = 0.005675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.818481 B = 4646.837636 C = 4933.066821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.028 3.972 3 N -0.499 5.499 4 C 0.056 3.944 5 C 0.078 3.922 6 C 0.027 3.973 7 N -0.455 5.455 8 C -0.265 4.265 9 C 0.145 3.855 10 C -0.463 4.463 11 H 0.119 0.881 12 C 0.021 3.979 13 N -0.808 5.808 14 Si 1.011 2.989 15 H -0.255 1.255 16 H -0.263 1.263 17 H -0.250 1.250 18 O -0.209 6.209 19 C -0.260 4.260 20 S 0.159 5.841 21 H 0.109 0.891 22 H 0.095 0.905 23 H 0.078 0.922 24 H 0.111 0.889 25 H 0.108 0.892 26 H 0.157 0.843 27 H 0.297 0.703 28 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.381 -9.915 4.397 11.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.250 4.250 3 N -0.215 5.215 4 C -0.075 4.075 5 C 0.037 3.963 6 C -0.175 4.175 7 N -0.183 5.183 8 C -0.408 4.408 9 C 0.091 3.909 10 C -0.492 4.492 11 H 0.136 0.864 12 C -0.197 4.197 13 N -0.434 5.434 14 Si 0.828 3.172 15 H -0.179 1.179 16 H -0.187 1.187 17 H -0.173 1.173 18 O -0.099 6.099 19 C -0.399 4.399 20 S 0.414 5.586 21 H 0.128 0.872 22 H 0.114 0.886 23 H 0.097 0.903 24 H 0.129 0.871 25 H 0.126 0.874 26 H 0.175 0.825 27 H 0.108 0.892 28 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -4.013 -10.557 5.011 12.355 hybrid contribution 1.139 0.976 -1.246 1.950 sum -2.874 -9.581 3.765 10.688 Atomic orbital electron populations 1.20561 0.83112 1.05175 1.04458 1.27748 1.03440 0.91064 1.02768 1.66038 1.05442 1.33303 1.16722 1.20195 0.90207 0.94578 1.02570 1.18179 0.96926 0.89633 0.91530 1.25332 1.02942 1.01557 0.87653 1.69332 1.16728 1.07497 1.24735 1.23049 1.16355 1.10320 0.91114 1.21095 0.91704 0.85344 0.92806 1.19247 1.24476 1.14264 0.91175 0.86371 1.27301 0.92896 0.92573 1.06940 1.69839 1.20374 1.12292 1.40889 0.84772 0.80096 0.79264 0.73044 1.17891 1.18720 1.17289 1.84667 1.57770 1.46676 1.20778 1.27128 1.05124 0.95166 1.12471 1.83290 0.96146 1.11123 1.68067 0.87223 0.88646 0.90335 0.87063 0.87373 0.82522 0.89236 0.78271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.64 10.47 71.24 0.75 -0.89 15 2 C 0.03 0.88 7.39 88.52 0.65 1.53 15 3 N -0.50 -20.35 10.39 -179.39 -1.86 -22.21 15 4 C 0.06 2.20 6.06 41.52 0.25 2.45 15 5 C 0.08 3.21 6.34 29.10 0.18 3.40 15 6 C 0.03 1.48 7.43 88.26 0.66 2.13 15 7 N -0.46 -26.03 11.23 -300.12 -3.37 -29.41 15 8 C -0.26 -15.41 11.99 84.75 1.02 -14.39 15 9 C 0.15 8.74 6.83 22.95 0.16 8.89 15 10 C -0.46 -25.63 9.35 23.13 0.22 -25.41 15 11 H 0.12 5.99 7.85 -2.91 -0.02 5.97 15 12 C 0.02 1.06 5.50 85.32 0.47 1.53 15 13 N -0.81 -43.19 12.06 21.87 0.26 -42.93 15 14 Si 1.01 36.81 29.56 68.60 2.03 38.83 15 15 H -0.25 -8.81 7.11 99.48 0.71 -8.10 15 16 H -0.26 -9.03 7.11 99.48 0.71 -8.32 15 17 H -0.25 -8.69 7.11 99.48 0.71 -7.98 15 18 O -0.21 -12.61 9.17 -11.76 -0.11 -12.72 15 19 C -0.26 -8.05 11.07 66.78 0.74 -7.31 15 20 S 0.16 4.07 23.17 -56.49 -1.31 2.76 15 21 H 0.11 1.63 8.12 -2.39 -0.02 1.62 15 22 H 0.10 1.95 8.14 -2.39 -0.02 1.93 15 23 H 0.08 1.91 8.14 -2.39 -0.02 1.89 15 24 H 0.11 3.96 8.03 -2.39 -0.02 3.94 15 25 H 0.11 4.11 8.14 -2.39 -0.02 4.09 15 26 H 0.16 8.38 8.06 -2.91 -0.02 8.35 15 27 H 0.30 13.99 8.29 -92.71 -0.77 13.22 15 28 H 0.20 4.93 8.06 -2.91 -0.02 4.91 15 Total: -1.00 -74.14 272.17 1.91 -72.23 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: 1.19 Total: 21.52 kcal Atomic # 6 Polarization: -33.17 SS G_CDS: 5.09 Total: -28.08 kcal Atomic # 7 Polarization: -89.57 SS G_CDS: -4.97 Total: -94.55 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: -0.11 Total: -12.72 kcal Atomic # 14 Polarization: 36.81 SS G_CDS: 2.03 Total: 38.83 kcal Atomic # 16 Polarization: 4.07 SS G_CDS: -1.31 Total: 2.76 kcal Total: -74.14 1.91 -72.23 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259704164.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.866 kcal (2) G-P(sol) polarization free energy of solvation -74.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds