Wall clock time and date at job start Mon Mar 30 2020 05:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50697 * 109.47169 * 2 1 4 4 S 1.70997 * 125.56849 * 269.97767 * 3 2 1 5 5 C 1.75915 * 90.76674 * 180.02562 * 4 3 2 6 6 C 1.47932 * 125.06453 * 179.97438 * 5 4 3 7 7 C 1.42426 * 126.96486 * 179.97438 * 6 5 4 8 8 C 1.35189 * 103.93420 * 179.97438 * 7 6 5 9 9 O 1.34074 * 106.72535 * 0.02562 * 8 7 6 10 10 N 1.20911 * 111.88567 * 359.97438 * 9 8 7 11 11 N 1.29776 * 109.87450 * 0.26252 * 5 4 3 12 12 C 1.32697 * 116.04121 * 359.52494 * 11 5 4 13 13 C 1.41169 * 122.77359 * 180.20307 * 12 11 5 14 14 H 1.07997 * 120.00060 * 174.18530 * 13 12 11 15 15 C 1.39691 * 120.00439 * 354.17936 * 13 12 11 16 16 N 1.31031 * 119.99636 * 6.16193 * 15 13 12 17 17 Si 1.86796 * 120.00659 * 186.15954 * 15 13 12 18 18 H 1.48501 * 109.47061 * 94.97973 * 17 15 13 19 19 H 1.48495 * 109.47483 * 214.98279 * 17 15 13 20 20 H 1.48505 * 109.46670 * 334.98679 * 17 15 13 21 21 H 1.09012 * 109.46856 * 299.99763 * 1 2 3 22 22 H 1.08994 * 109.47772 * 59.99498 * 1 2 3 23 23 H 1.08997 * 109.47339 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47141 * 240.00350 * 2 1 3 25 25 H 1.09002 * 109.47495 * 120.00640 * 2 1 3 26 26 H 1.08003 * 128.03366 * 359.97438 * 7 6 5 27 27 H 1.08002 * 126.63685 * 179.74429 * 8 7 6 28 28 H 0.96998 * 119.99899 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 16 2.3643 2.3584 -1.3909 5 6 2.8462 3.7201 -0.3869 6 6 3.3103 5.0292 -0.8961 7 6 3.7087 6.1567 -0.1225 8 6 4.0392 7.0857 -1.0473 9 8 3.8407 6.5227 -2.2478 10 7 3.4382 5.3866 -2.1518 11 7 2.7398 3.4032 0.8670 12 6 2.3001 2.1776 1.1229 13 6 2.1268 1.6863 2.4349 14 1 1.6781 0.7168 2.5936 15 6 2.5356 2.4539 3.5280 16 7 2.9678 3.6772 3.3444 17 14 2.4661 1.7368 5.2514 18 1 3.7919 1.1690 5.6051 19 1 2.1116 2.8062 6.2187 20 1 1.4396 0.6648 5.3004 21 1 -0.3633 0.5139 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 3.7397 6.2482 0.9532 27 1 4.3904 8.0890 -0.8561 28 1 3.2521 4.2102 4.1034 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259708816.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:34 Heat of formation + Delta-G solvation = 90.296097 kcal Electronic energy + Delta-G solvation = -15483.747642 eV Core-core repulsion = 12822.613936 eV Total energy + Delta-G solvation = -2661.133706 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -44.46184 -38.05294 -34.20925 -33.03633 -32.73980 -31.31275 -28.51073 -25.69026 -24.65733 -22.66622 -21.49088 -20.86291 -19.11245 -17.32381 -17.16517 -16.76428 -15.59682 -15.32102 -14.47998 -13.69906 -13.31890 -13.03668 -12.92599 -12.85841 -12.37389 -11.62305 -11.45875 -11.31106 -11.11064 -10.84167 -10.68087 -10.36790 -10.28653 -10.05349 -9.47764 -9.34754 -9.19604 -8.17325 -7.89606 -7.28712 -6.60302 -4.40037 1.47951 2.04949 2.67399 2.90434 3.07159 3.10746 3.18585 3.49673 3.62292 3.95561 4.29782 4.36445 5.14699 5.40456 5.57872 5.78249 5.93288 5.96640 5.99621 6.26541 6.45887 6.51783 6.66511 6.76334 7.00013 7.01492 7.18892 7.47346 8.12760 8.46744 8.62536 8.82110 9.46477 10.28030 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.019703 B = 0.008827 C = 0.006227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.780343 B = 3171.340580 C = 4495.691690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.002 4.002 3 C -0.404 4.404 4 S 0.030 5.970 5 C 0.086 3.914 6 C 0.110 3.890 7 C -0.185 4.185 8 C -0.082 4.082 9 O 0.098 5.902 10 N -0.363 5.363 11 N -0.371 5.371 12 C 0.226 3.774 13 C -0.425 4.425 14 H 0.088 0.912 15 C 0.071 3.929 16 N -0.752 5.752 17 Si 0.910 3.090 18 H -0.270 1.270 19 H -0.277 1.277 20 H -0.261 1.261 21 H 0.056 0.944 22 H 0.043 0.957 23 H 0.039 0.961 24 H 0.042 0.958 25 H 0.066 0.934 26 H 0.179 0.821 27 H 0.215 0.785 28 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.873 3.513 -3.100 4.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.042 4.042 3 C -0.526 4.526 4 S 0.281 5.719 5 C -0.192 4.192 6 C -0.050 4.050 7 C -0.209 4.209 8 C -0.163 4.163 9 O 0.030 5.970 10 N -0.068 5.068 11 N -0.089 5.089 12 C 0.101 3.899 13 C -0.459 4.459 14 H 0.106 0.894 15 C -0.151 4.151 16 N -0.375 5.375 17 Si 0.735 3.265 18 H -0.196 1.196 19 H -0.202 1.202 20 H -0.185 1.185 21 H 0.075 0.925 22 H 0.063 0.937 23 H 0.058 0.942 24 H 0.061 0.939 25 H 0.084 0.916 26 H 0.197 0.803 27 H 0.232 0.768 28 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.816 3.310 -4.815 5.900 hybrid contribution -0.005 -0.259 2.668 2.680 sum 0.812 3.051 -2.147 3.818 Atomic orbital electron populations 1.21775 0.96958 0.99484 1.01722 1.19261 0.93917 0.90823 1.00167 1.24386 1.31380 1.03167 0.93715 1.82748 1.66976 1.08847 1.13330 1.24079 1.08611 0.94395 0.92159 1.20961 1.01332 0.94179 0.88489 1.22897 1.03796 0.91486 1.02713 1.25823 1.05290 1.01351 0.83804 1.84765 1.61467 1.19751 1.31022 1.74196 1.17278 0.95671 1.19669 1.67327 1.11352 1.17354 1.12822 1.17690 0.93137 0.85075 0.93998 1.18952 1.35873 1.03249 0.87862 0.89378 1.25977 0.93438 0.94400 1.01260 1.70105 1.28222 1.07011 1.32202 0.86260 0.79484 0.79600 0.81174 1.19553 1.20232 1.18536 0.92475 0.93745 0.94162 0.93899 0.91602 0.80320 0.76831 0.91600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 9.89 37.15 0.37 -2.26 15 2 C 0.00 -0.03 6.03 -27.89 -0.17 -0.20 15 3 C -0.40 -9.85 5.73 -34.38 -0.20 -10.05 15 4 S 0.03 0.68 23.13 -107.50 -2.49 -1.80 15 5 C 0.09 2.10 7.45 -14.45 -0.11 2.00 15 6 C 0.11 2.35 7.25 -82.56 -0.60 1.75 15 7 C -0.19 -3.28 11.13 -39.06 -0.43 -3.71 15 8 C -0.08 -1.09 12.27 29.65 0.36 -0.73 15 9 O 0.10 1.58 11.18 17.09 0.19 1.77 15 10 N -0.36 -7.16 12.13 33.29 0.40 -6.76 15 11 N -0.37 -10.00 8.44 -9.13 -0.08 -10.08 15 12 C 0.23 6.10 6.45 -86.45 -0.56 5.54 15 13 C -0.42 -11.22 8.86 -37.93 -0.34 -11.55 15 14 H 0.09 2.20 6.86 -52.49 -0.36 1.84 15 15 C 0.07 1.80 5.48 -17.35 -0.10 1.70 15 16 N -0.75 -19.55 11.72 55.54 0.65 -18.90 15 17 Si 0.91 18.60 29.56 -169.99 -5.03 13.58 15 18 H -0.27 -5.48 7.11 56.52 0.40 -5.08 15 19 H -0.28 -5.55 7.11 56.52 0.40 -5.15 15 20 H -0.26 -5.25 7.11 56.52 0.40 -4.85 15 21 H 0.06 1.13 8.14 -51.92 -0.42 0.70 15 22 H 0.04 0.81 8.14 -51.93 -0.42 0.39 15 23 H 0.04 0.62 8.14 -51.93 -0.42 0.20 15 24 H 0.04 0.82 8.14 -51.93 -0.42 0.40 15 25 H 0.07 1.36 7.16 -51.93 -0.37 0.99 15 26 H 0.18 3.15 8.06 -52.48 -0.42 2.73 15 27 H 0.22 1.66 8.06 -52.49 -0.42 1.23 15 28 H 0.27 6.45 8.30 -40.82 -0.34 6.11 15 LS Contribution 269.02 15.07 4.05 4.05 Total: -1.00 -29.67 269.02 -6.45 -36.13 By element: Atomic # 1 Polarization: 1.92 SS G_CDS: -2.40 Total: -0.49 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: -1.76 Total: -17.51 kcal Atomic # 7 Polarization: -36.71 SS G_CDS: 0.98 Total: -35.74 kcal Atomic # 8 Polarization: 1.58 SS G_CDS: 0.19 Total: 1.77 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.03 Total: 13.58 kcal Atomic # 16 Polarization: 0.68 SS G_CDS: -2.49 Total: -1.80 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -29.67 -6.45 -36.13 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259708816.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.426 kcal (2) G-P(sol) polarization free energy of solvation -29.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds