Wall clock time and date at job start Mon Mar 30 2020 05:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50697 * 109.47169 * 2 1 4 4 S 1.70997 * 125.56849 * 269.97767 * 3 2 1 5 5 C 1.75915 * 90.76674 * 180.02562 * 4 3 2 6 6 C 1.47932 * 125.06453 * 179.97438 * 5 4 3 7 7 C 1.42426 * 126.96486 * 179.97438 * 6 5 4 8 8 C 1.35189 * 103.93420 * 179.97438 * 7 6 5 9 9 O 1.34074 * 106.72535 * 0.02562 * 8 7 6 10 10 N 1.20911 * 111.88567 * 359.97438 * 9 8 7 11 11 N 1.29776 * 109.87450 * 0.26252 * 5 4 3 12 12 C 1.32697 * 116.04121 * 359.52494 * 11 5 4 13 13 C 1.41169 * 122.77359 * 180.20307 * 12 11 5 14 14 H 1.07997 * 120.00060 * 174.18530 * 13 12 11 15 15 C 1.39691 * 120.00439 * 354.17936 * 13 12 11 16 16 N 1.31031 * 119.99636 * 6.16193 * 15 13 12 17 17 Si 1.86796 * 120.00659 * 186.15954 * 15 13 12 18 18 H 1.48501 * 109.47061 * 94.97973 * 17 15 13 19 19 H 1.48495 * 109.47483 * 214.98279 * 17 15 13 20 20 H 1.48505 * 109.46670 * 334.98679 * 17 15 13 21 21 H 1.09012 * 109.46856 * 299.99763 * 1 2 3 22 22 H 1.08994 * 109.47772 * 59.99498 * 1 2 3 23 23 H 1.08997 * 109.47339 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47141 * 240.00350 * 2 1 3 25 25 H 1.09002 * 109.47495 * 120.00640 * 2 1 3 26 26 H 1.08003 * 128.03366 * 359.97438 * 7 6 5 27 27 H 1.08002 * 126.63685 * 179.74429 * 8 7 6 28 28 H 0.96998 * 119.99899 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 16 2.3643 2.3584 -1.3909 5 6 2.8462 3.7201 -0.3869 6 6 3.3103 5.0292 -0.8961 7 6 3.7087 6.1567 -0.1225 8 6 4.0392 7.0857 -1.0473 9 8 3.8407 6.5227 -2.2478 10 7 3.4382 5.3866 -2.1518 11 7 2.7398 3.4032 0.8670 12 6 2.3001 2.1776 1.1229 13 6 2.1268 1.6863 2.4349 14 1 1.6781 0.7168 2.5936 15 6 2.5356 2.4539 3.5280 16 7 2.9678 3.6772 3.3444 17 14 2.4661 1.7368 5.2514 18 1 3.7919 1.1690 5.6051 19 1 2.1116 2.8062 6.2187 20 1 1.4396 0.6648 5.3004 21 1 -0.3633 0.5139 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 3.7397 6.2482 0.9532 27 1 4.3904 8.0890 -0.8561 28 1 3.2521 4.2102 4.1034 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259708816.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:33 Heat of formation + Delta-G solvation = 72.021913 kcal Electronic energy + Delta-G solvation = -15484.540070 eV Core-core repulsion = 12822.613936 eV Total energy + Delta-G solvation = -2661.926134 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -45.90489 -39.92952 -35.82331 -34.85042 -34.32431 -32.69809 -30.31866 -27.51840 -26.34836 -24.16839 -23.10770 -22.46436 -20.79295 -18.98081 -18.60540 -18.43788 -17.42109 -17.03760 -16.09066 -15.28382 -15.02086 -14.73412 -14.62219 -14.29886 -13.86085 -13.41982 -13.08271 -12.97041 -12.63023 -12.57596 -12.35208 -12.03193 -11.94761 -11.65432 -11.27241 -11.00917 -10.60905 -10.05526 -9.76682 -9.14264 -8.44894 -6.34536 -0.21641 0.75331 0.85363 1.28370 1.39198 1.52734 1.56356 1.63061 2.24328 2.43940 2.44100 2.79422 3.46646 3.89059 4.21892 4.26834 4.36112 4.43130 4.66992 4.81125 4.87157 4.94671 5.13221 5.14385 5.27236 5.37835 5.45348 5.62646 6.18673 6.55674 6.89143 7.28003 7.57998 8.46019 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.019703 B = 0.008827 C = 0.006227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.780343 B = 3171.340580 C = 4495.691690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.004 4.004 3 C -0.414 4.414 4 S 0.052 5.948 5 C 0.075 3.925 6 C 0.065 3.935 7 C -0.215 4.215 8 C -0.028 4.028 9 O 0.119 5.881 10 N -0.379 5.379 11 N -0.406 5.406 12 C 0.190 3.810 13 C -0.458 4.458 14 H 0.091 0.909 15 C 0.027 3.973 16 N -0.787 5.787 17 Si 0.986 3.014 18 H -0.266 1.266 19 H -0.269 1.269 20 H -0.256 1.256 21 H 0.037 0.963 22 H 0.043 0.957 23 H 0.074 0.926 24 H 0.059 0.941 25 H 0.062 0.938 26 H 0.172 0.828 27 H 0.281 0.719 28 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.126 4.279 -3.296 5.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.044 4.044 3 C -0.536 4.536 4 S 0.304 5.696 5 C -0.203 4.203 6 C -0.093 4.093 7 C -0.240 4.240 8 C -0.108 4.108 9 O 0.047 5.953 10 N -0.081 5.081 11 N -0.123 5.123 12 C 0.065 3.935 13 C -0.493 4.493 14 H 0.109 0.891 15 C -0.192 4.192 16 N -0.411 5.411 17 Si 0.807 3.193 18 H -0.191 1.191 19 H -0.194 1.194 20 H -0.179 1.179 21 H 0.056 0.944 22 H 0.062 0.938 23 H 0.093 0.907 24 H 0.078 0.922 25 H 0.081 0.919 26 H 0.189 0.811 27 H 0.297 0.703 28 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.052 4.035 -5.034 6.537 hybrid contribution -0.032 -0.361 2.546 2.571 sum 1.019 3.674 -2.489 4.553 Atomic orbital electron populations 1.21674 0.95143 1.01459 1.00725 1.19392 0.95430 0.88833 1.00754 1.24949 1.30299 1.04689 0.93710 1.82464 1.66404 1.08195 1.12523 1.24660 1.07702 0.96006 0.91952 1.21064 1.04009 0.94262 0.89924 1.22951 1.06112 0.91769 1.03119 1.26798 1.00814 1.02160 0.81063 1.84727 1.59897 1.18523 1.32141 1.74196 1.17682 0.97142 1.19075 1.67303 1.13117 1.17840 1.14090 1.18156 0.94268 0.85843 0.95205 1.19232 1.37478 1.03915 0.88629 0.89145 1.26862 0.92592 0.94569 1.05166 1.70198 1.28962 1.08235 1.33658 0.85122 0.79542 0.78903 0.75717 1.19119 1.19360 1.17940 0.94366 0.93784 0.90666 0.92227 0.91947 0.81079 0.70334 0.91037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.79 9.89 71.98 0.71 -4.08 15 2 C 0.00 -0.17 6.03 29.85 0.18 0.01 15 3 C -0.41 -20.62 5.73 25.64 0.15 -20.48 15 4 S 0.05 2.44 23.13 -56.49 -1.31 1.14 15 5 C 0.07 3.79 7.45 87.57 0.65 4.44 15 6 C 0.07 2.80 7.25 42.85 0.31 3.11 15 7 C -0.22 -7.44 11.13 22.61 0.25 -7.18 15 8 C -0.03 -0.64 12.27 67.12 0.82 0.19 15 9 O 0.12 3.49 11.18 71.33 0.80 4.29 15 10 N -0.38 -14.58 12.13 -49.46 -0.60 -15.18 15 11 N -0.41 -22.76 8.44 -182.81 -1.54 -24.31 15 12 C 0.19 10.65 6.45 39.68 0.26 10.91 15 13 C -0.46 -24.99 8.86 23.34 0.21 -24.78 15 14 H 0.09 4.66 6.86 -2.91 -0.02 4.64 15 15 C 0.03 1.38 5.48 85.16 0.47 1.85 15 16 N -0.79 -42.14 11.72 21.79 0.26 -41.89 15 17 Si 0.99 38.63 29.56 68.60 2.03 40.66 15 18 H -0.27 -10.15 7.11 99.48 0.71 -9.45 15 19 H -0.27 -10.05 7.11 99.48 0.71 -9.35 15 20 H -0.26 -9.65 7.11 99.48 0.71 -8.95 15 21 H 0.04 1.50 8.14 -2.38 -0.02 1.48 15 22 H 0.04 1.57 8.14 -2.39 -0.02 1.55 15 23 H 0.07 2.18 8.14 -2.39 -0.02 2.16 15 24 H 0.06 2.22 8.14 -2.39 -0.02 2.20 15 25 H 0.06 2.59 7.16 -2.39 -0.02 2.58 15 26 H 0.17 6.13 8.06 -2.91 -0.02 6.11 15 27 H 0.28 2.46 8.06 -2.91 -0.02 2.44 15 28 H 0.28 13.51 8.30 -92.71 -0.77 12.74 15 Total: -1.00 -67.98 269.02 4.83 -63.16 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: 1.19 Total: 8.16 kcal Atomic # 6 Polarization: -40.03 SS G_CDS: 4.01 Total: -36.02 kcal Atomic # 7 Polarization: -79.49 SS G_CDS: -1.89 Total: -81.38 kcal Atomic # 8 Polarization: 3.49 SS G_CDS: 0.80 Total: 4.29 kcal Atomic # 14 Polarization: 38.63 SS G_CDS: 2.03 Total: 40.66 kcal Atomic # 16 Polarization: 2.44 SS G_CDS: -1.31 Total: 1.14 kcal Total: -67.98 4.83 -63.16 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259708816.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.178 kcal (2) G-P(sol) polarization free energy of solvation -67.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds