Wall clock time and date at job start Mon Mar 30 2020 05:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34863 * 126.35502 * 2 1 4 4 N 1.33846 * 107.87124 * 180.02562 * 3 2 1 5 5 C 1.31493 * 108.66149 * 359.97438 * 4 3 2 6 6 C 1.47088 * 125.74132 * 180.02562 * 5 4 3 7 7 N 1.30093 * 125.07262 * 0.02562 * 6 5 4 8 8 C 1.32567 * 116.00160 * 180.02562 * 7 6 5 9 9 C 1.41182 * 122.76191 * 179.97438 * 8 7 6 10 10 H 1.08006 * 119.99292 * 173.78291 * 9 8 7 11 11 C 1.39614 * 120.00119 * 353.77330 * 9 8 7 12 12 N 1.31059 * 120.00382 * 6.09767 * 11 9 8 13 13 Si 1.86805 * 119.99896 * 186.09651 * 11 9 8 14 14 H 1.48500 * 109.47246 * 94.98583 * 13 11 9 15 15 H 1.48498 * 109.46868 * 214.98565 * 13 11 9 16 16 H 1.48501 * 109.47006 * 334.98322 * 13 11 9 17 17 C 1.38149 * 114.47076 * 359.97438 * 8 7 6 18 18 C 1.50692 * 125.54810 * 179.97438 * 17 8 7 19 19 S 1.71000 * 108.89653 * 0.26982 * 17 8 7 20 20 O 1.34557 * 108.51636 * 0.26386 * 5 4 3 21 21 H 1.09004 * 109.47190 * 90.00226 * 1 2 3 22 22 H 1.08999 * 109.46555 * 209.99751 * 1 2 3 23 23 H 1.08996 * 109.47213 * 330.00291 * 1 2 3 24 24 H 1.07992 * 126.06179 * 359.97438 * 3 2 1 25 25 H 0.96999 * 120.00596 * 180.02562 * 12 11 9 26 26 H 1.08999 * 109.47074 * 90.00634 * 18 17 8 27 27 H 1.09006 * 109.47254 * 210.00306 * 18 17 8 28 28 H 1.09001 * 109.47662 * 330.00742 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3065 1.0861 0.0000 4 7 3.5759 0.6618 -0.0006 5 6 3.5800 -0.6531 -0.0004 6 6 4.7765 -1.5086 -0.0003 7 7 6.0038 -1.0773 0.0000 8 6 6.9472 -2.0087 -0.0005 9 6 8.3250 -1.7006 -0.0007 10 1 9.0548 -2.4903 0.1001 11 6 8.7439 -0.3752 -0.1316 12 7 7.8616 0.5938 -0.1340 13 14 10.5623 0.0169 -0.3032 14 1 10.9091 0.1369 -1.7421 15 1 10.8595 1.2981 0.3862 16 1 11.3636 -1.0727 0.3100 17 6 6.4710 -3.3055 -0.0008 18 6 7.3199 -4.5505 -0.0019 19 16 4.7614 -3.2677 -0.0079 20 8 2.3054 -1.0844 -0.0055 21 1 -0.3634 0.0000 -1.0277 22 1 -0.3632 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5138 24 1 1.9802 2.1156 -0.0004 25 1 8.1526 1.5146 -0.2252 26 1 7.5252 -4.8512 1.0255 27 1 6.7889 -5.3519 -0.5158 28 1 8.2596 -4.3492 -0.5162 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259708876.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:27 Heat of formation + Delta-G solvation = 36.878054 kcal Electronic energy + Delta-G solvation = -15351.249986 eV Core-core repulsion = 12687.799900 eV Total energy + Delta-G solvation = -2663.450086 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -44.30660 -39.92688 -35.87297 -35.21618 -33.83999 -32.76767 -29.72661 -28.31863 -25.79385 -25.01151 -23.18697 -22.40181 -20.92696 -18.83299 -18.28986 -17.87890 -17.30615 -16.72233 -15.90084 -15.33314 -15.17454 -14.86984 -14.20824 -13.88374 -13.66223 -13.46908 -13.37284 -13.23881 -13.14693 -12.93613 -12.49129 -12.42301 -12.16717 -11.46163 -11.43353 -11.24017 -10.20109 -10.09456 -9.76859 -8.96091 -8.42743 -6.37799 -0.45535 0.65664 0.72228 1.35688 1.38080 1.39170 1.50686 1.56590 1.75265 2.24281 2.41112 3.18425 3.43803 3.80423 3.99283 4.22938 4.48465 4.64838 4.69217 4.72898 4.84952 4.96114 5.08484 5.10926 5.25125 5.31101 5.37196 5.53405 6.14562 6.51909 6.70209 6.86396 7.54701 8.45854 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.025868 B = 0.007279 C = 0.005707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.151711 B = 3845.840149 C = 4905.087668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C -0.036 4.036 3 C -0.062 4.062 4 N -0.471 5.471 5 C 0.237 3.763 6 C 0.067 3.933 7 N -0.392 5.392 8 C 0.185 3.815 9 C -0.458 4.458 10 H 0.099 0.901 11 C 0.020 3.980 12 N -0.785 5.785 13 Si 0.992 3.008 14 H -0.265 1.265 15 H -0.273 1.273 16 H -0.249 1.249 17 C -0.417 4.417 18 C -0.025 4.025 19 S 0.100 5.900 20 O -0.200 6.200 21 H 0.105 0.895 22 H 0.088 0.912 23 H 0.123 0.877 24 H 0.220 0.780 25 H 0.278 0.722 26 H 0.055 0.945 27 H 0.063 0.937 28 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.704 -1.707 -0.152 10.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.091 4.091 3 C -0.203 4.203 4 N -0.202 5.202 5 C 0.032 3.968 6 C -0.209 4.209 7 N -0.111 5.111 8 C 0.060 3.940 9 C -0.493 4.493 10 H 0.117 0.883 11 C -0.199 4.199 12 N -0.409 5.409 13 Si 0.812 3.188 14 H -0.190 1.190 15 H -0.198 1.198 16 H -0.172 1.172 17 C -0.540 4.540 18 C -0.084 4.084 19 S 0.350 5.650 20 O -0.086 6.086 21 H 0.123 0.877 22 H 0.107 0.893 23 H 0.142 0.858 24 H 0.236 0.764 25 H 0.088 0.912 26 H 0.074 0.926 27 H 0.082 0.918 28 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.889 -1.355 -0.166 10.974 hybrid contribution 1.164 0.355 -0.065 1.219 sum -9.724 -0.999 -0.231 9.778 Atomic orbital electron populations 1.20607 0.79078 1.06321 1.05600 1.24821 0.96949 0.83251 1.04091 1.23898 0.86468 1.02456 1.07479 1.70784 1.24830 1.08514 1.16066 1.21907 0.81744 0.87992 1.05170 1.23693 0.91593 0.93112 1.12500 1.67350 0.97020 1.35672 1.11058 1.18247 0.94276 0.85425 0.96063 1.19325 0.89812 0.94244 1.45876 0.88286 1.27013 1.04791 0.95682 0.92416 1.70305 1.37293 1.00843 1.32443 0.85054 0.75897 0.78699 0.79185 1.18990 1.19753 1.17243 1.25184 0.95909 0.99765 1.33149 1.19643 0.97104 0.90847 1.00835 1.82151 1.04871 1.03757 1.74218 1.84424 1.16450 1.37653 1.70090 0.87687 0.89278 0.85849 0.76359 0.91195 0.92636 0.91803 0.91960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.86 10.43 71.24 0.74 -0.12 15 2 C -0.04 -1.05 7.39 24.91 0.18 -0.87 15 3 C -0.06 -2.04 11.79 83.61 0.99 -1.05 15 4 N -0.47 -22.01 11.32 -305.30 -3.46 -25.46 15 5 C 0.24 11.21 8.18 87.07 0.71 11.93 15 6 C 0.07 3.51 7.44 87.27 0.65 4.16 15 7 N -0.39 -23.30 8.49 -183.39 -1.56 -24.86 15 8 C 0.19 10.60 6.45 39.73 0.26 10.86 15 9 C -0.46 -25.56 8.86 23.33 0.21 -25.35 15 10 H 0.10 5.08 6.86 -2.91 -0.02 5.06 15 11 C 0.02 1.07 5.48 85.14 0.47 1.53 15 12 N -0.79 -45.74 11.72 21.78 0.26 -45.48 15 13 Si 0.99 40.15 29.56 68.60 2.03 42.17 15 14 H -0.27 -10.39 7.11 99.48 0.71 -9.69 15 15 H -0.27 -10.71 7.11 99.48 0.71 -10.01 15 16 H -0.25 -9.45 7.11 99.48 0.71 -8.75 15 17 C -0.42 -20.54 6.48 25.66 0.17 -20.37 15 18 C -0.02 -0.98 9.97 71.23 0.71 -0.27 15 19 S 0.10 4.45 23.12 -56.49 -1.31 3.14 15 20 O -0.20 -7.69 10.80 -8.51 -0.09 -7.79 15 21 H 0.10 1.15 8.14 -2.38 -0.02 1.13 15 22 H 0.09 1.14 8.14 -2.39 -0.02 1.13 15 23 H 0.12 1.05 8.14 -2.39 -0.02 1.03 15 24 H 0.22 5.14 8.06 -2.91 -0.02 5.12 15 25 H 0.28 14.89 8.30 -92.71 -0.77 14.12 15 26 H 0.05 2.04 8.14 -2.39 -0.02 2.02 15 27 H 0.06 2.17 8.14 -2.38 -0.02 2.15 15 28 H 0.06 2.44 7.16 -2.39 -0.02 2.43 15 Total: -1.00 -74.23 269.91 2.15 -72.09 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: 1.19 Total: 5.74 kcal Atomic # 6 Polarization: -24.63 SS G_CDS: 5.08 Total: -19.55 kcal Atomic # 7 Polarization: -91.04 SS G_CDS: -4.76 Total: -95.80 kcal Atomic # 8 Polarization: -7.69 SS G_CDS: -0.09 Total: -7.79 kcal Atomic # 14 Polarization: 40.15 SS G_CDS: 2.03 Total: 42.17 kcal Atomic # 16 Polarization: 4.45 SS G_CDS: -1.31 Total: 3.14 kcal Total: -74.23 2.15 -72.09 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259708876.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.965 kcal (2) G-P(sol) polarization free energy of solvation -74.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds