Wall clock time and date at job start Mon Mar 30 2020 05:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50698 * 109.47134 * 2 1 4 4 O 1.33793 * 126.86421 * 270.02175 * 3 2 1 5 5 N 1.20645 * 113.12200 * 180.02562 * 4 3 2 6 6 C 1.30025 * 112.37793 * 359.97438 * 5 4 3 7 7 C 1.37566 * 126.86422 * 90.02333 * 3 2 1 8 8 C 1.47159 * 128.57650 * 359.97438 * 7 3 2 9 9 S 1.77200 * 127.83802 * 1.59771 * 8 7 3 10 10 N 1.69532 * 95.64225 * 179.97438 * 9 8 7 11 11 C 1.29154 * 108.47629 * 359.97438 * 10 9 8 12 12 C 1.39671 * 118.39543 * 359.70713 * 11 10 9 13 13 C 1.40878 * 123.41980 * 180.36860 * 12 11 10 14 14 H 1.08008 * 120.00002 * 209.33931 * 13 12 11 15 15 C 1.39747 * 120.00207 * 29.33977 * 13 12 11 16 16 N 1.31050 * 119.99343 * 14.22296 * 15 13 12 17 17 Si 1.86792 * 120.00181 * 194.22222 * 15 13 12 18 18 H 1.48497 * 109.47184 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47027 * 119.99918 * 17 15 13 20 20 H 1.48502 * 109.47278 * 239.99610 * 17 15 13 21 21 H 1.08999 * 109.47465 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47628 * 300.00714 * 1 2 3 23 23 H 1.09009 * 109.47026 * 60.00476 * 1 2 3 24 24 H 1.08994 * 109.47137 * 239.99355 * 2 1 3 25 25 H 1.09004 * 109.46553 * 119.99489 * 2 1 3 26 26 H 1.07995 * 127.31219 * 180.02562 * 6 5 4 27 27 H 1.07999 * 120.80281 * 180.02562 * 11 10 9 28 28 H 0.97003 * 119.99340 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2995 2.1777 -1.0704 5 7 2.6907 3.2824 -0.7838 6 6 2.7561 3.4663 0.5017 7 6 2.3078 2.1987 1.1006 8 6 2.1846 1.8499 2.5249 9 16 1.6785 0.3029 3.2254 10 7 1.8270 0.7949 4.8409 11 6 2.2255 2.0233 4.8598 12 6 2.4496 2.6676 3.6410 13 6 2.8918 4.0012 3.5381 14 1 2.6141 4.5977 2.6816 15 6 3.6897 4.5524 4.5443 16 7 4.2565 3.7725 5.4320 17 14 3.9483 6.4007 4.6240 18 1 3.2052 7.0527 3.5160 19 1 3.4485 6.9148 5.9245 20 1 5.3963 6.7039 4.4955 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 1.8933 -0.5139 -0.8899 25 1 1.8932 -0.5138 0.8901 26 1 3.0721 4.3596 1.0199 27 1 2.3865 2.5382 5.7953 28 1 4.8100 4.1552 6.1306 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259712919.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:24 Heat of formation + Delta-G solvation = 73.132379 kcal Electronic energy + Delta-G solvation = -15745.539441 eV Core-core repulsion = 13083.661461 eV Total energy + Delta-G solvation = -2661.877980 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.80695 -37.41075 -34.40293 -33.72174 -32.86304 -30.36891 -29.09779 -26.20896 -23.68029 -23.24537 -21.90979 -20.08843 -19.21781 -17.36463 -16.72720 -16.13776 -15.65973 -15.45939 -14.46476 -14.13267 -13.61126 -13.02968 -12.81814 -12.54155 -12.17394 -11.95716 -11.65957 -11.56767 -11.33438 -11.13442 -10.83476 -10.63616 -10.50527 -9.93669 -9.76487 -9.47510 -9.16325 -9.01020 -7.54052 -7.42855 -7.20826 -4.67383 1.56313 2.48025 2.78702 2.87318 2.92579 2.95678 3.22986 3.30038 3.65184 3.81940 3.89719 4.85179 5.14961 5.21124 5.50507 5.61647 5.75536 5.93287 6.09209 6.17481 6.37105 6.43435 6.51089 6.57670 6.69182 6.81357 7.07856 7.29922 7.66498 7.90568 8.29646 8.36628 9.11893 9.73196 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.022455 B = 0.009273 C = 0.006816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.658087 B = 3018.918996 C = 4106.902051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.026 4.026 3 C -0.110 4.110 4 O 0.081 5.919 5 N -0.376 5.376 6 C -0.010 4.010 7 C -0.030 4.030 8 C -0.282 4.282 9 S 0.072 5.928 10 N -0.470 5.470 11 C 0.127 3.873 12 C 0.061 3.939 13 C -0.401 4.401 14 H 0.094 0.906 15 C 0.069 3.931 16 N -0.784 5.784 17 Si 0.919 3.081 18 H -0.255 1.255 19 H -0.267 1.267 20 H -0.269 1.269 21 H 0.060 0.940 22 H 0.063 0.937 23 H 0.053 0.947 24 H 0.076 0.924 25 H 0.091 0.909 26 H 0.194 0.806 27 H 0.174 0.826 28 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.578 -0.980 -3.723 4.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.065 4.065 3 C -0.172 4.172 4 O 0.015 5.985 5 N -0.081 5.081 6 C -0.192 4.192 7 C -0.036 4.036 8 C -0.406 4.406 9 S 0.221 5.779 10 N -0.283 5.283 11 C -0.080 4.080 12 C 0.048 3.952 13 C -0.434 4.434 14 H 0.112 0.888 15 C -0.152 4.152 16 N -0.409 5.409 17 Si 0.742 3.258 18 H -0.179 1.179 19 H -0.192 1.192 20 H -0.194 1.194 21 H 0.079 0.921 22 H 0.082 0.918 23 H 0.073 0.927 24 H 0.094 0.906 25 H 0.109 0.891 26 H 0.211 0.789 27 H 0.191 0.809 28 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.857 -2.400 -4.177 5.601 hybrid contribution 0.864 2.380 0.998 2.722 sum -1.993 -0.020 -3.179 3.752 Atomic orbital electron populations 1.21770 0.94370 1.01764 1.02522 1.19862 0.96073 0.87168 1.03361 1.24033 1.10555 0.96990 0.85616 1.84350 1.63065 1.17614 1.33434 1.73455 1.17119 0.99377 1.18153 1.26398 1.03530 1.00491 0.88783 1.19504 1.01076 0.92044 0.90974 1.22067 1.30482 0.96184 0.91917 1.83758 1.74270 1.19996 0.99863 1.76093 1.22898 1.16221 1.13132 1.23106 0.93908 0.90248 1.00768 1.18090 0.93879 0.94659 0.88583 1.19331 1.24013 0.94931 1.05159 0.88807 1.26103 0.93635 1.01588 0.93844 1.69807 1.21167 1.37976 1.11964 0.86034 0.79300 0.80509 0.79912 1.17862 1.19190 1.19437 0.92060 0.91824 0.92750 0.90558 0.89062 0.78899 0.80911 0.89794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.89 37.16 0.37 -1.68 15 2 C -0.03 -0.40 6.04 -27.88 -0.17 -0.57 15 3 C -0.11 -2.12 6.82 -34.55 -0.24 -2.36 15 4 O 0.08 1.59 11.08 17.89 0.20 1.79 15 5 N -0.38 -7.76 12.01 31.85 0.38 -7.38 15 6 C -0.01 -0.22 11.41 -14.68 -0.17 -0.39 15 7 C -0.03 -0.65 6.44 -102.89 -0.66 -1.31 15 8 C -0.28 -6.60 6.82 -34.97 -0.24 -6.84 15 9 S 0.07 1.59 21.44 -107.50 -2.30 -0.72 15 10 N -0.47 -11.17 11.96 29.73 0.36 -10.82 15 11 C 0.13 3.04 9.88 -18.14 -0.18 2.86 15 12 C 0.06 1.49 5.50 -107.37 -0.59 0.90 15 13 C -0.40 -9.27 8.40 -38.02 -0.32 -9.59 15 14 H 0.09 2.07 5.38 -52.48 -0.28 1.79 15 15 C 0.07 1.49 5.27 -17.32 -0.09 1.40 15 16 N -0.78 -17.72 11.33 55.54 0.63 -17.09 15 17 Si 0.92 16.37 29.58 -169.99 -5.03 11.35 15 18 H -0.26 -4.52 7.11 56.52 0.40 -4.12 15 19 H -0.27 -4.68 7.11 56.52 0.40 -4.28 15 20 H -0.27 -4.81 7.11 56.52 0.40 -4.41 15 21 H 0.06 0.71 8.14 -51.93 -0.42 0.28 15 22 H 0.06 1.00 8.14 -51.93 -0.42 0.58 15 23 H 0.05 0.72 8.14 -51.92 -0.42 0.29 15 24 H 0.08 1.00 8.14 -51.93 -0.42 0.58 15 25 H 0.09 1.51 5.98 -51.93 -0.31 1.20 15 26 H 0.19 3.84 5.96 -52.49 -0.31 3.53 15 27 H 0.17 4.04 6.73 -52.49 -0.35 3.69 15 28 H 0.29 5.91 8.30 -40.82 -0.34 5.58 15 LS Contribution 260.12 15.07 3.92 3.92 Total: -1.00 -25.60 260.12 -6.22 -31.81 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -2.08 Total: 4.72 kcal Atomic # 6 Polarization: -15.30 SS G_CDS: -2.29 Total: -17.58 kcal Atomic # 7 Polarization: -36.65 SS G_CDS: 1.37 Total: -35.29 kcal Atomic # 8 Polarization: 1.59 SS G_CDS: 0.20 Total: 1.79 kcal Atomic # 14 Polarization: 16.37 SS G_CDS: -5.03 Total: 11.35 kcal Atomic # 16 Polarization: 1.59 SS G_CDS: -2.30 Total: -0.72 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -25.60 -6.22 -31.81 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259712919.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.947 kcal (2) G-P(sol) polarization free energy of solvation -25.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds