Wall clock time and date at job start Mon Mar 30 2020 05:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50698 * 109.47134 * 2 1 4 4 O 1.33793 * 126.86421 * 270.02175 * 3 2 1 5 5 N 1.20645 * 113.12200 * 180.02562 * 4 3 2 6 6 C 1.30025 * 112.37793 * 359.97438 * 5 4 3 7 7 C 1.37566 * 126.86422 * 90.02333 * 3 2 1 8 8 C 1.47159 * 128.57650 * 359.97438 * 7 3 2 9 9 S 1.77200 * 127.83802 * 1.59771 * 8 7 3 10 10 N 1.69532 * 95.64225 * 179.97438 * 9 8 7 11 11 C 1.29154 * 108.47629 * 359.97438 * 10 9 8 12 12 C 1.39671 * 118.39543 * 359.70713 * 11 10 9 13 13 C 1.40878 * 123.41980 * 180.36860 * 12 11 10 14 14 H 1.08008 * 120.00002 * 209.33931 * 13 12 11 15 15 C 1.39747 * 120.00207 * 29.33977 * 13 12 11 16 16 N 1.31050 * 119.99343 * 14.22296 * 15 13 12 17 17 Si 1.86792 * 120.00181 * 194.22222 * 15 13 12 18 18 H 1.48497 * 109.47184 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47027 * 119.99918 * 17 15 13 20 20 H 1.48502 * 109.47278 * 239.99610 * 17 15 13 21 21 H 1.08999 * 109.47465 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47628 * 300.00714 * 1 2 3 23 23 H 1.09009 * 109.47026 * 60.00476 * 1 2 3 24 24 H 1.08994 * 109.47137 * 239.99355 * 2 1 3 25 25 H 1.09004 * 109.46553 * 119.99489 * 2 1 3 26 26 H 1.07995 * 127.31219 * 180.02562 * 6 5 4 27 27 H 1.07999 * 120.80281 * 180.02562 * 11 10 9 28 28 H 0.97003 * 119.99340 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2995 2.1777 -1.0704 5 7 2.6907 3.2824 -0.7838 6 6 2.7561 3.4663 0.5017 7 6 2.3078 2.1987 1.1006 8 6 2.1846 1.8499 2.5249 9 16 1.6785 0.3029 3.2254 10 7 1.8270 0.7949 4.8409 11 6 2.2255 2.0233 4.8598 12 6 2.4496 2.6676 3.6410 13 6 2.8918 4.0012 3.5381 14 1 2.6141 4.5977 2.6816 15 6 3.6897 4.5524 4.5443 16 7 4.2565 3.7725 5.4320 17 14 3.9483 6.4007 4.6240 18 1 3.2052 7.0527 3.5160 19 1 3.4485 6.9148 5.9245 20 1 5.3963 6.7039 4.4955 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 1.8933 -0.5139 -0.8899 25 1 1.8932 -0.5138 0.8901 26 1 3.0721 4.3596 1.0199 27 1 2.3865 2.5382 5.7953 28 1 4.8100 4.1552 6.1306 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259712919.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:24 Heat of formation + Delta-G solvation = 60.007729 kcal Electronic energy + Delta-G solvation = -15746.108569 eV Core-core repulsion = 13083.661461 eV Total energy + Delta-G solvation = -2662.447108 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -45.44492 -39.18039 -35.85147 -35.40268 -34.45814 -32.00894 -30.66751 -27.91710 -25.25843 -24.72695 -23.59231 -21.68525 -20.94535 -19.04188 -18.35656 -17.75872 -17.35840 -17.05924 -16.05996 -15.45582 -15.22359 -14.63117 -14.33636 -14.16496 -13.72618 -13.37305 -13.27840 -13.11157 -12.85745 -12.53875 -12.27799 -12.11400 -11.89036 -11.59368 -11.43371 -11.16034 -10.89487 -10.64892 -9.29143 -9.13345 -8.85527 -6.41253 -0.15880 0.84428 1.18012 1.32080 1.38753 1.47953 1.57339 1.59445 2.12210 2.18096 2.35033 3.11281 3.50731 3.77499 4.14659 4.33129 4.41309 4.44818 4.56564 4.76540 4.88584 4.98789 5.07445 5.12695 5.21256 5.34323 5.44634 5.52929 5.90453 6.17151 6.54086 6.65790 7.50426 8.12958 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.022455 B = 0.009273 C = 0.006816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.658087 B = 3018.918996 C = 4106.902051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.030 4.030 3 C -0.083 4.083 4 O 0.088 5.912 5 N -0.382 5.382 6 C -0.016 4.016 7 C -0.070 4.070 8 C -0.293 4.293 9 S 0.109 5.891 10 N -0.493 5.493 11 C 0.120 3.880 12 C 0.032 3.968 13 C -0.423 4.423 14 H 0.097 0.903 15 C 0.038 3.962 16 N -0.814 5.814 17 Si 0.987 3.013 18 H -0.254 1.254 19 H -0.260 1.260 20 H -0.267 1.267 21 H 0.091 0.909 22 H 0.040 0.960 23 H 0.063 0.937 24 H 0.110 0.890 25 H 0.083 0.917 26 H 0.199 0.801 27 H 0.171 0.829 28 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.822 -1.079 -4.893 5.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.069 4.069 3 C -0.146 4.146 4 O 0.023 5.977 5 N -0.087 5.087 6 C -0.197 4.197 7 C -0.077 4.077 8 C -0.419 4.419 9 S 0.259 5.741 10 N -0.307 5.307 11 C -0.086 4.086 12 C 0.018 3.982 13 C -0.456 4.456 14 H 0.115 0.885 15 C -0.180 4.180 16 N -0.440 5.440 17 Si 0.807 3.193 18 H -0.177 1.177 19 H -0.184 1.184 20 H -0.192 1.192 21 H 0.110 0.890 22 H 0.059 0.941 23 H 0.082 0.918 24 H 0.129 0.871 25 H 0.101 0.899 26 H 0.215 0.785 27 H 0.188 0.812 28 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.106 -2.510 -5.350 6.676 hybrid contribution 0.913 2.279 1.233 2.748 sum -2.193 -0.231 -4.116 4.670 Atomic orbital electron populations 1.21749 0.92755 1.03608 1.01868 1.20130 0.97325 0.84817 1.04598 1.24724 1.07386 0.97858 0.84671 1.84354 1.62501 1.17414 1.33397 1.73446 1.17631 0.99821 1.17808 1.26529 1.03500 1.00712 0.88958 1.19678 1.03634 0.93267 0.91083 1.22393 1.30073 0.96758 0.92632 1.83438 1.73497 1.18833 0.98365 1.75962 1.23537 1.16349 1.14894 1.23077 0.94350 0.90379 1.00829 1.18389 0.95154 0.95672 0.88948 1.19530 1.24992 0.94918 1.06194 0.88538 1.26847 0.92686 1.05491 0.92949 1.69831 1.21665 1.39857 1.12599 0.85041 0.79069 0.75181 0.80028 1.17698 1.18432 1.19192 0.89033 0.94114 0.91764 0.87144 0.89851 0.78452 0.81226 0.88927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.56 9.89 71.98 0.71 -2.85 15 2 C -0.03 -0.86 6.04 29.85 0.18 -0.67 15 3 C -0.08 -3.08 6.82 25.53 0.17 -2.90 15 4 O 0.09 3.30 11.08 74.28 0.82 4.13 15 5 N -0.38 -15.30 12.01 -53.97 -0.65 -15.94 15 6 C -0.02 -0.66 11.41 87.31 1.00 0.34 15 7 C -0.07 -3.04 6.44 -18.74 -0.12 -3.16 15 8 C -0.29 -13.78 6.82 25.26 0.17 -13.60 15 9 S 0.11 4.74 21.44 -56.49 -1.21 3.53 15 10 N -0.49 -23.65 11.96 -59.84 -0.72 -24.36 15 11 C 0.12 5.88 9.88 85.43 0.84 6.72 15 12 C 0.03 1.57 5.50 -21.64 -0.12 1.45 15 13 C -0.42 -19.84 8.40 23.28 0.20 -19.64 15 14 H 0.10 4.32 5.38 -2.91 -0.02 4.31 15 15 C 0.04 1.66 5.27 85.17 0.45 2.10 15 16 N -0.81 -37.12 11.33 21.80 0.25 -36.87 15 17 Si 0.99 33.14 29.58 68.60 2.03 35.17 15 18 H -0.25 -8.37 7.11 99.48 0.71 -7.66 15 19 H -0.26 -8.38 7.11 99.48 0.71 -7.67 15 20 H -0.27 -8.82 7.11 99.48 0.71 -8.11 15 21 H 0.09 1.76 8.14 -2.39 -0.02 1.74 15 22 H 0.04 1.20 8.14 -2.39 -0.02 1.18 15 23 H 0.06 1.48 8.14 -2.38 -0.02 1.46 15 24 H 0.11 2.44 8.14 -2.39 -0.02 2.43 15 25 H 0.08 2.56 5.98 -2.38 -0.01 2.55 15 26 H 0.20 7.88 5.96 -2.91 -0.02 7.87 15 27 H 0.17 8.20 6.73 -2.91 -0.02 8.18 15 28 H 0.30 12.20 8.30 -92.71 -0.77 11.43 15 Total: -1.00 -54.09 260.12 5.22 -48.87 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: 1.21 Total: 17.70 kcal Atomic # 6 Polarization: -35.70 SS G_CDS: 3.48 Total: -32.22 kcal Atomic # 7 Polarization: -76.06 SS G_CDS: -1.12 Total: -77.18 kcal Atomic # 8 Polarization: 3.30 SS G_CDS: 0.82 Total: 4.13 kcal Atomic # 14 Polarization: 33.14 SS G_CDS: 2.03 Total: 35.17 kcal Atomic # 16 Polarization: 4.74 SS G_CDS: -1.21 Total: 3.53 kcal Total: -54.09 5.22 -48.87 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259712919.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.878 kcal (2) G-P(sol) polarization free energy of solvation -54.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds