Wall clock time and date at job start Mon Mar 30 2020 05:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.34151 * 126.25112 * 2 1 4 4 C 1.30337 * 108.93150 * 180.31449 * 3 2 1 5 5 C 1.50702 * 125.45681 * 179.73522 * 4 3 2 6 6 C 1.50698 * 109.47513 * 89.99827 * 5 4 3 7 7 H 1.08007 * 119.99674 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00240 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99769 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 119.99997 * 179.97438 * 8 6 5 11 11 H 1.48510 * 109.47124 * 89.99820 * 10 8 6 12 12 H 1.48495 * 109.47180 * 209.99764 * 10 8 6 13 13 H 1.48500 * 109.47375 * 330.00245 * 10 8 6 14 14 O 1.34096 * 109.08069 * 359.72861 * 4 3 2 15 15 C 1.35160 * 107.70026 * 0.02562 * 14 4 3 16 16 C 1.47279 * 126.60148 * 179.97438 * 15 14 4 17 17 C 1.35308 * 126.11694 * 0.03233 * 16 15 14 18 18 N 1.31443 * 114.16671 * 179.76060 * 17 16 15 19 19 C 1.29113 * 117.30638 * 0.23448 * 18 17 16 20 20 S 1.70948 * 110.41765 * 359.97438 * 19 18 17 21 21 H 1.09007 * 109.47151 * 270.14098 * 1 2 3 22 22 H 1.09002 * 109.47790 * 30.14214 * 1 2 3 23 23 H 1.08998 * 109.47230 * 150.14727 * 1 2 3 24 24 H 1.09010 * 109.46604 * 209.99538 * 5 4 3 25 25 H 1.08995 * 109.47015 * 329.99013 * 5 4 3 26 26 H 0.96996 * 119.99634 * 179.97438 * 9 8 6 27 27 H 1.08002 * 122.92061 * 0.03738 * 17 16 15 28 28 H 1.08004 * 124.79023 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.3002 1.0818 0.0000 4 6 3.5445 0.6938 -0.0068 5 6 4.7444 1.6055 -0.0148 6 6 5.1527 1.9111 1.4033 7 1 4.5984 1.4878 2.2279 8 6 6.2332 2.7319 1.6480 9 7 6.9079 3.2476 0.6438 10 14 6.7388 3.1112 3.4057 11 1 7.7201 2.0971 3.8684 12 1 7.3569 4.4602 3.4628 13 1 5.5414 3.0777 4.2834 14 8 3.5857 -0.6465 -0.0053 15 6 2.3113 -1.0968 0.0021 16 6 1.8773 -2.5042 0.0057 17 6 2.6868 -3.5885 0.0028 18 7 2.0478 -4.7371 0.0121 19 6 0.7573 -4.6969 0.0181 20 16 0.2110 -3.0771 0.0125 21 1 -0.3634 0.0025 1.0277 22 1 -0.3635 0.8887 -0.5160 23 1 -0.3633 -0.8913 -0.5115 24 1 5.5692 1.1159 -0.5328 25 1 4.4924 2.5332 -0.5284 26 1 7.6678 3.8253 0.8159 27 1 3.7644 -3.5164 -0.0021 28 1 0.1138 -5.5643 0.0255 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259736367.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:03 Heat of formation + Delta-G solvation = 55.433313 kcal Electronic energy + Delta-G solvation = -15169.183007 eV Core-core repulsion = 12506.537537 eV Total energy + Delta-G solvation = -2662.645469 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.70677 -39.54365 -34.72346 -33.82622 -32.46272 -30.13834 -28.97131 -26.83169 -24.93739 -23.49506 -21.22881 -20.83500 -19.66290 -18.29659 -16.85146 -16.51332 -15.86827 -15.20296 -14.55074 -14.38666 -14.23343 -13.99248 -13.23610 -13.17758 -12.68280 -12.36258 -12.25655 -11.68485 -11.41917 -10.98879 -10.82035 -10.49195 -10.20548 -10.09861 -9.99745 -9.69326 -9.57778 -9.20728 -8.60913 -7.63487 -6.23309 -4.29058 0.27917 1.01704 1.58239 2.05670 2.88849 3.23589 3.24759 3.29185 3.30946 3.37250 4.25792 4.31717 4.61582 4.82222 5.05934 5.12991 5.14892 5.35071 5.60851 5.73737 5.79631 6.08591 6.31812 6.40446 6.82679 7.14503 7.17607 7.59439 7.70262 7.95004 8.39255 8.71389 9.35463 10.86659 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.035240 B = 0.005175 C = 0.004888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.371049 B = 5409.294788 C = 5726.469751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.025 3.975 3 N -0.502 5.502 4 C 0.277 3.723 5 C 0.102 3.898 6 C -0.522 4.522 7 H 0.061 0.939 8 C 0.065 3.935 9 N -0.889 5.889 10 Si 0.906 3.094 11 H -0.277 1.277 12 H -0.283 1.283 13 H -0.272 1.272 14 O -0.192 6.192 15 C -0.035 4.035 16 C -0.126 4.126 17 C 0.037 3.963 18 N -0.462 5.462 19 C -0.012 4.012 20 S 0.170 5.830 21 H 0.080 0.920 22 H 0.084 0.916 23 H 0.068 0.932 24 H 0.053 0.947 25 H 0.070 0.930 26 H 0.267 0.733 27 H 0.181 0.819 28 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.268 -11.447 -2.011 17.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.099 4.099 3 N -0.231 5.231 4 C 0.072 3.928 5 C 0.064 3.936 6 C -0.561 4.561 7 H 0.079 0.921 8 C -0.138 4.138 9 N -0.527 5.527 10 Si 0.733 3.267 11 H -0.203 1.203 12 H -0.208 1.208 13 H -0.196 1.196 14 O -0.081 6.081 15 C -0.090 4.090 16 C -0.247 4.247 17 C -0.116 4.116 18 N -0.174 5.174 19 C -0.308 4.308 20 S 0.423 5.577 21 H 0.098 0.902 22 H 0.103 0.897 23 H 0.086 0.914 24 H 0.071 0.929 25 H 0.088 0.912 26 H 0.077 0.923 27 H 0.198 0.802 28 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -14.010 -10.878 -2.058 17.857 hybrid contribution 1.540 -0.498 0.931 1.867 sum -12.470 -11.377 -1.127 16.918 Atomic orbital electron populations 1.20208 0.87133 1.02694 1.03038 1.21876 0.97431 0.87833 1.02721 1.70420 1.00867 1.29800 1.21981 1.28017 0.96413 0.77617 0.90726 1.18202 0.84594 0.90826 0.99992 1.20833 1.14140 1.30859 0.90280 0.92081 1.24937 0.95706 0.95137 0.98032 1.69924 1.19758 1.32144 1.30849 0.86359 0.78860 0.77789 0.83720 1.20327 1.20829 1.19649 1.84548 1.27836 1.25287 1.70384 1.19389 0.82880 0.91117 1.15618 1.23037 0.96370 0.93671 1.11629 1.22148 1.01883 0.84725 1.02820 1.66192 1.07335 1.29447 1.14454 1.28575 0.94678 1.01585 1.05922 1.83827 1.04735 1.01352 1.67744 0.90164 0.89687 0.91411 0.92897 0.91207 0.92301 0.80180 0.78363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.97 9.70 36.00 0.35 -0.62 15 2 C 0.03 0.47 7.16 -82.38 -0.59 -0.12 15 3 N -0.50 -11.20 11.27 -7.01 -0.08 -11.28 15 4 C 0.28 6.46 7.52 -12.91 -0.10 6.36 15 5 C 0.10 2.58 5.60 -29.03 -0.16 2.41 15 6 C -0.52 -14.41 9.09 -34.44 -0.31 -14.73 15 7 H 0.06 1.70 7.74 -52.48 -0.41 1.29 15 8 C 0.06 1.78 5.46 -17.82 -0.10 1.68 15 9 N -0.89 -25.15 13.29 55.43 0.74 -24.41 15 10 Si 0.91 21.10 29.54 -169.99 -5.02 16.08 15 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 15 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 13 H -0.27 -6.31 7.11 56.52 0.40 -5.90 15 14 O -0.19 -4.18 10.80 3.84 0.04 -4.14 15 15 C -0.03 -0.66 7.21 -36.71 -0.26 -0.92 15 16 C -0.13 -1.94 6.48 -36.95 -0.24 -2.18 15 17 C 0.04 0.55 11.32 -18.76 -0.21 0.34 15 18 N -0.46 -6.41 10.52 -15.42 -0.16 -6.57 15 19 C -0.01 -0.13 12.21 51.62 0.63 0.50 15 20 S 0.17 1.83 19.97 -107.50 -2.15 -0.32 15 21 H 0.08 0.95 8.14 -51.92 -0.42 0.53 15 22 H 0.08 1.06 8.14 -51.93 -0.42 0.63 15 23 H 0.07 0.75 5.44 -47.49 -0.26 0.49 15 24 H 0.05 1.35 8.14 -51.92 -0.42 0.93 15 25 H 0.07 1.82 8.14 -51.93 -0.42 1.40 15 26 H 0.27 7.11 8.31 -40.82 -0.34 6.77 15 27 H 0.18 2.66 8.06 -52.49 -0.42 2.23 15 28 H 0.20 1.28 8.06 -52.48 -0.42 0.86 15 LS Contribution 268.63 15.07 4.05 4.05 Total: -1.00 -30.73 268.63 -5.92 -36.65 By element: Atomic # 1 Polarization: -0.46 SS G_CDS: -2.34 Total: -2.79 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -1.00 Total: -7.26 kcal Atomic # 7 Polarization: -42.76 SS G_CDS: 0.50 Total: -42.27 kcal Atomic # 8 Polarization: -4.18 SS G_CDS: 0.04 Total: -4.14 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 1.83 SS G_CDS: -2.15 Total: -0.32 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -30.73 -5.92 -36.65 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259736367.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.084 kcal (2) G-P(sol) polarization free energy of solvation -30.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds