Wall clock time and date at job start Mon Mar 30 2020 05:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.34151 * 126.25112 * 2 1 4 4 C 1.30337 * 108.93150 * 180.31449 * 3 2 1 5 5 C 1.50702 * 125.45681 * 179.73522 * 4 3 2 6 6 C 1.50698 * 109.47513 * 89.99827 * 5 4 3 7 7 H 1.08007 * 119.99674 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00240 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99769 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 119.99997 * 179.97438 * 8 6 5 11 11 H 1.48510 * 109.47124 * 89.99820 * 10 8 6 12 12 H 1.48495 * 109.47180 * 209.99764 * 10 8 6 13 13 H 1.48500 * 109.47375 * 330.00245 * 10 8 6 14 14 O 1.34096 * 109.08069 * 359.72861 * 4 3 2 15 15 C 1.35160 * 107.70026 * 0.02562 * 14 4 3 16 16 C 1.47279 * 126.60148 * 179.97438 * 15 14 4 17 17 C 1.35308 * 126.11694 * 0.03233 * 16 15 14 18 18 N 1.31443 * 114.16671 * 179.76060 * 17 16 15 19 19 C 1.29113 * 117.30638 * 0.23448 * 18 17 16 20 20 S 1.70948 * 110.41765 * 359.97438 * 19 18 17 21 21 H 1.09007 * 109.47151 * 270.14098 * 1 2 3 22 22 H 1.09002 * 109.47790 * 30.14214 * 1 2 3 23 23 H 1.08998 * 109.47230 * 150.14727 * 1 2 3 24 24 H 1.09010 * 109.46604 * 209.99538 * 5 4 3 25 25 H 1.08995 * 109.47015 * 329.99013 * 5 4 3 26 26 H 0.96996 * 119.99634 * 179.97438 * 9 8 6 27 27 H 1.08002 * 122.92061 * 0.03738 * 17 16 15 28 28 H 1.08004 * 124.79023 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.3002 1.0818 0.0000 4 6 3.5445 0.6938 -0.0068 5 6 4.7444 1.6055 -0.0148 6 6 5.1527 1.9111 1.4033 7 1 4.5984 1.4878 2.2279 8 6 6.2332 2.7319 1.6480 9 7 6.9079 3.2476 0.6438 10 14 6.7388 3.1112 3.4057 11 1 7.7201 2.0971 3.8684 12 1 7.3569 4.4602 3.4628 13 1 5.5414 3.0777 4.2834 14 8 3.5857 -0.6465 -0.0053 15 6 2.3113 -1.0968 0.0021 16 6 1.8773 -2.5042 0.0057 17 6 2.6868 -3.5885 0.0028 18 7 2.0478 -4.7371 0.0121 19 6 0.7573 -4.6969 0.0181 20 16 0.2110 -3.0771 0.0125 21 1 -0.3634 0.0025 1.0277 22 1 -0.3635 0.8887 -0.5160 23 1 -0.3633 -0.8913 -0.5115 24 1 5.5692 1.1159 -0.5328 25 1 4.4924 2.5332 -0.5284 26 1 7.6678 3.8253 0.8159 27 1 3.7644 -3.5164 -0.0021 28 1 0.1138 -5.5643 0.0255 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259736367.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:02 Heat of formation + Delta-G solvation = 33.159420 kcal Electronic energy + Delta-G solvation = -15170.148875 eV Core-core repulsion = 12506.537537 eV Total energy + Delta-G solvation = -2663.611338 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -44.29753 -40.59781 -36.26934 -35.75695 -34.04407 -31.64495 -30.47074 -28.07631 -26.46302 -25.11546 -22.83431 -22.25429 -20.94867 -19.39481 -18.85184 -17.83065 -17.58316 -16.86795 -16.17846 -15.47667 -15.41544 -14.97672 -14.72350 -14.44720 -14.26297 -14.12219 -13.74043 -13.26553 -12.91361 -12.69219 -12.53358 -12.13047 -12.12477 -11.66488 -11.58910 -11.24095 -10.71188 -10.68487 -10.12315 -9.05487 -8.32091 -6.47432 -0.83470 0.00050 0.62061 0.67586 1.38953 1.40545 1.50662 1.57301 1.78575 1.87537 2.36456 2.99832 3.12702 3.29423 3.55334 3.74844 4.10606 4.33789 4.48849 4.61179 4.64332 4.86177 4.91731 5.01074 5.08332 5.15892 5.35657 5.56113 5.87904 6.57092 6.59275 6.76332 7.21158 8.77432 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.035240 B = 0.005175 C = 0.004888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.371049 B = 5409.294788 C = 5726.469751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.004 3.996 3 N -0.514 5.514 4 C 0.241 3.759 5 C 0.113 3.887 6 C -0.544 4.544 7 H 0.051 0.949 8 C 0.018 3.982 9 N -0.918 5.918 10 Si 0.973 3.027 11 H -0.269 1.269 12 H -0.272 1.272 13 H -0.270 1.270 14 O -0.208 6.208 15 C -0.027 4.027 16 C -0.181 4.181 17 C 0.043 3.957 18 N -0.495 5.495 19 C 0.012 3.988 20 S 0.251 5.749 21 H 0.098 0.902 22 H 0.093 0.907 23 H 0.092 0.908 24 H 0.039 0.961 25 H 0.052 0.948 26 H 0.273 0.727 27 H 0.169 0.831 28 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.740 -13.261 -1.124 20.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.119 4.119 3 N -0.244 5.244 4 C 0.036 3.964 5 C 0.075 3.925 6 C -0.582 4.582 7 H 0.069 0.931 8 C -0.182 4.182 9 N -0.557 5.557 10 Si 0.796 3.204 11 H -0.194 1.194 12 H -0.197 1.197 13 H -0.195 1.195 14 O -0.097 6.097 15 C -0.081 4.081 16 C -0.302 4.302 17 C -0.111 4.111 18 N -0.208 5.208 19 C -0.283 4.283 20 S 0.506 5.494 21 H 0.116 0.884 22 H 0.111 0.889 23 H 0.110 0.890 24 H 0.057 0.943 25 H 0.070 0.930 26 H 0.082 0.918 27 H 0.186 0.814 28 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -16.505 -12.696 -1.182 20.857 hybrid contribution 2.136 -0.180 0.603 2.227 sum -14.369 -12.876 -0.579 19.303 Atomic orbital electron populations 1.20394 0.83252 1.04310 1.04651 1.22617 0.99608 0.86483 1.03185 1.70333 1.00869 1.31672 1.21521 1.27324 0.96284 0.78157 0.94625 1.17780 0.85294 0.90622 0.98834 1.21066 1.14696 1.31445 0.91005 0.93086 1.25813 0.95417 0.94632 1.02377 1.70018 1.20170 1.32516 1.32958 0.85330 0.78523 0.78109 0.78412 1.19385 1.19656 1.19467 1.84484 1.30009 1.24667 1.70498 1.20095 0.81594 0.93053 1.13348 1.23211 0.99936 0.91844 1.15232 1.22162 1.01908 0.85474 1.01571 1.66285 1.08916 1.28665 1.16954 1.29499 0.94131 1.03416 1.01220 1.83486 1.00265 0.99985 1.65651 0.88369 0.88869 0.89026 0.94336 0.92982 0.91802 0.81425 0.73734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.66 9.70 71.23 0.69 -0.97 15 2 C 0.00 0.16 7.16 41.69 0.30 0.45 15 3 N -0.51 -23.67 11.27 -290.78 -3.28 -26.94 15 4 C 0.24 11.88 7.52 88.33 0.66 12.55 15 5 C 0.11 6.10 5.60 29.10 0.16 6.26 15 6 C -0.54 -31.29 9.09 25.60 0.23 -31.06 15 7 H 0.05 2.96 7.74 -2.91 -0.02 2.94 15 8 C 0.02 1.01 5.46 84.65 0.46 1.47 15 9 N -0.92 -53.30 13.29 21.45 0.28 -53.01 15 10 Si 0.97 43.72 29.54 68.60 2.03 45.75 15 11 H -0.27 -11.63 7.11 99.48 0.71 -10.93 15 12 H -0.27 -11.65 7.11 99.48 0.71 -10.95 15 13 H -0.27 -11.97 7.11 99.48 0.71 -11.26 15 14 O -0.21 -9.55 10.80 -9.16 -0.10 -9.65 15 15 C -0.03 -1.01 7.21 24.13 0.17 -0.84 15 16 C -0.18 -5.36 6.48 23.97 0.16 -5.20 15 17 C 0.04 1.26 11.32 84.07 0.95 2.21 15 18 N -0.50 -12.50 10.52 -202.70 -2.13 -14.64 15 19 C 0.01 0.20 12.21 130.64 1.60 1.79 15 20 S 0.25 4.38 19.97 -56.49 -1.13 3.25 15 21 H 0.10 2.03 8.14 -2.38 -0.02 2.01 15 22 H 0.09 2.11 8.14 -2.39 -0.02 2.09 15 23 H 0.09 1.69 5.44 -5.21 -0.03 1.66 15 24 H 0.04 2.13 8.14 -2.38 -0.02 2.11 15 25 H 0.05 2.93 8.14 -2.39 -0.02 2.91 15 26 H 0.27 14.72 8.31 -92.71 -0.77 13.95 15 27 H 0.17 5.14 8.06 -2.91 -0.02 5.12 15 28 H 0.25 1.57 8.06 -2.91 -0.02 1.55 15 Total: -1.00 -69.63 268.63 2.24 -67.39 By element: Atomic # 1 Polarization: 0.01 SS G_CDS: 1.17 Total: 1.19 kcal Atomic # 6 Polarization: -18.73 SS G_CDS: 5.39 Total: -13.34 kcal Atomic # 7 Polarization: -89.47 SS G_CDS: -5.12 Total: -94.59 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: -0.10 Total: -9.65 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 16 Polarization: 4.38 SS G_CDS: -1.13 Total: 3.25 kcal Total: -69.63 2.24 -67.39 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259736367.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.548 kcal (2) G-P(sol) polarization free energy of solvation -69.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds