Wall clock time and date at job start Mon Mar 30 2020 06:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33405 * 126.20688 * 2 1 4 4 C 1.30895 * 109.91223 * 180.02562 * 3 2 1 5 5 C 1.50706 * 125.37221 * 180.02562 * 4 3 2 6 6 C 1.50698 * 109.47294 * 90.02518 * 5 4 3 7 7 H 1.08005 * 119.99819 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00046 * 180.02562 * 6 5 4 9 9 N 1.31518 * 119.99944 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99979 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47418 * 89.99710 * 10 8 6 12 12 H 1.48498 * 109.47091 * 209.99770 * 10 8 6 13 13 H 1.48498 * 109.46997 * 329.99580 * 10 8 6 14 14 N 1.35626 * 109.25351 * 0.26506 * 4 3 2 15 15 C 1.37985 * 126.20678 * 180.02562 * 2 1 3 16 16 C 1.40983 * 133.69632 * 359.97438 * 15 2 1 17 17 C 1.35896 * 119.19635 * 179.97438 * 16 15 2 18 18 C 1.40753 * 119.79102 * 0.02562 * 17 16 15 19 19 C 1.34874 * 120.59136 * 359.97345 * 18 17 16 20 20 Cl 1.73594 * 119.73515 * 180.02562 * 19 18 17 21 21 H 1.08997 * 109.47452 * 89.97223 * 1 2 3 22 22 H 1.08994 * 109.46910 * 209.97410 * 1 2 3 23 23 H 1.09006 * 109.46942 * 329.97413 * 1 2 3 24 24 H 1.09001 * 109.46953 * 210.01960 * 5 4 3 25 25 H 1.09000 * 109.47318 * 330.01558 * 5 4 3 26 26 H 0.96997 * 119.99752 * 180.02562 * 9 8 6 27 27 H 1.07998 * 120.40045 * 359.95675 * 16 15 2 28 28 H 1.08000 * 120.10396 * 179.97438 * 17 16 15 29 29 H 1.08000 * 119.70723 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2950 1.0764 0.0000 4 6 3.5514 0.7092 -0.0006 5 6 4.7335 1.6439 -0.0002 6 6 5.1283 1.9540 1.4207 7 1 4.5780 1.5182 2.2415 8 6 6.1914 2.7949 1.6730 9 7 6.8613 3.3260 0.6735 10 14 6.6803 3.1799 3.4343 11 1 7.6786 2.1839 3.8999 12 1 7.2719 4.5405 3.4976 13 1 5.4792 3.1213 4.3054 14 7 3.6214 -0.6453 -0.0069 15 6 2.3221 -1.1134 -0.0005 16 6 2.0749 -2.5014 -0.0007 17 6 3.1266 -3.3620 -0.0017 18 6 4.4414 -2.8595 -0.0021 19 6 4.6681 -1.5300 -0.0020 20 17 6.2987 -0.9345 -0.0031 21 1 -0.3634 0.0005 -1.0276 22 1 -0.3633 -0.8902 0.5134 23 1 -0.3633 0.8898 0.5143 24 1 5.5703 1.1716 -0.5149 25 1 4.4664 2.5678 -0.5131 26 1 7.6094 3.9173 0.8510 27 1 1.0620 -2.8761 0.0003 28 1 2.9541 -4.4281 -0.0015 29 1 5.2762 -3.5447 -0.0034 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259754440.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:12 Heat of formation + Delta-G solvation = 69.031186 kcal Electronic energy + Delta-G solvation = -15801.297057 eV Core-core repulsion = 13137.197529 eV Total energy + Delta-G solvation = -2664.099528 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.22351 -37.34502 -36.19280 -33.78947 -32.87910 -30.73051 -29.87609 -28.77384 -25.39802 -23.53917 -23.18562 -20.79870 -20.14086 -16.86654 -16.55688 -16.45369 -15.44761 -15.33585 -14.73214 -14.56747 -13.46621 -13.12039 -12.61309 -12.41406 -12.15191 -11.95324 -11.90924 -11.79898 -11.68535 -11.02555 -10.91048 -10.72253 -10.11196 -9.90300 -9.88772 -9.53240 -9.45311 -8.72610 -8.43181 -6.79951 -6.06014 -4.10132 0.99454 1.63038 1.98320 3.16591 3.29600 3.35819 3.40640 3.63415 3.69147 4.43461 4.85890 4.94468 5.15671 5.18620 5.19195 5.29817 5.59691 5.88514 5.93382 5.99534 6.11888 6.17945 6.22219 6.44088 6.83213 7.05350 7.36305 7.45622 7.69504 7.86449 8.21064 8.63908 8.89793 9.52536 11.02661 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.022995 B = 0.008716 C = 0.007086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.384183 B = 3211.548164 C = 3950.714314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.012 3.988 3 N -0.461 5.461 4 C 0.253 3.747 5 C 0.085 3.915 6 C -0.504 4.504 7 H 0.054 0.946 8 C 0.065 3.935 9 N -0.891 5.891 10 Si 0.894 3.106 11 H -0.280 1.280 12 H -0.284 1.284 13 H -0.273 1.273 14 N -0.377 5.377 15 C -0.033 4.033 16 C -0.062 4.062 17 C -0.138 4.138 18 C -0.140 4.140 19 C 0.143 3.857 20 Cl 0.006 6.994 21 H 0.065 0.935 22 H 0.064 0.936 23 H 0.071 0.929 24 H 0.051 0.949 25 H 0.052 0.948 26 H 0.263 0.737 27 H 0.140 0.860 28 H 0.135 0.865 29 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.315 -13.108 -2.296 14.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.123 4.123 3 N -0.175 5.175 4 C -0.004 4.004 5 C 0.047 3.953 6 C -0.543 4.543 7 H 0.072 0.928 8 C -0.137 4.137 9 N -0.530 5.530 10 Si 0.721 3.279 11 H -0.206 1.206 12 H -0.210 1.210 13 H -0.198 1.198 14 N -0.052 5.052 15 C -0.138 4.138 16 C -0.082 4.082 17 C -0.159 4.159 18 C -0.163 4.163 19 C 0.014 3.986 20 Cl 0.035 6.965 21 H 0.084 0.916 22 H 0.083 0.917 23 H 0.090 0.910 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.158 0.842 28 H 0.153 0.847 29 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -6.198 -12.023 -2.352 13.729 hybrid contribution 0.836 -0.533 1.025 1.426 sum -5.362 -12.556 -1.327 13.717 Atomic orbital electron populations 1.19947 0.87378 1.02423 1.01837 1.21008 0.96052 0.86946 1.08293 1.70055 0.99852 1.29026 1.18613 1.25048 0.96071 0.78749 1.00545 1.18230 0.85976 0.91747 0.99357 1.20802 1.14287 1.28632 0.90586 0.92784 1.24875 0.96029 0.95537 0.97230 1.69937 1.20688 1.31758 1.30599 0.86549 0.78781 0.77700 0.84836 1.20600 1.20996 1.19774 1.43039 1.05221 1.07843 1.49117 1.19211 0.83590 0.94790 1.16217 1.20411 0.99923 0.89171 0.98740 1.20761 0.91096 0.99924 1.04094 1.20495 0.98977 0.91117 1.05709 1.21061 0.83132 0.89124 1.05246 1.98484 1.13382 1.88311 1.96322 0.91581 0.91706 0.90989 0.93081 0.92983 0.92730 0.84178 0.84672 0.83438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.81 10.44 36.00 0.38 -0.44 15 2 C 0.01 0.23 7.20 -82.00 -0.59 -0.36 15 3 N -0.46 -10.87 11.19 -6.27 -0.07 -10.94 15 4 C 0.25 6.11 7.17 -154.55 -1.11 5.00 15 5 C 0.09 2.26 4.79 -29.03 -0.14 2.12 15 6 C -0.50 -14.18 9.05 -34.44 -0.31 -14.49 15 7 H 0.05 1.57 7.74 -52.48 -0.41 1.16 15 8 C 0.07 1.83 5.46 -17.82 -0.10 1.73 15 9 N -0.89 -25.78 13.29 55.43 0.74 -25.04 15 10 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 15 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 15 12 H -0.28 -6.80 7.11 56.52 0.40 -6.39 15 13 H -0.27 -6.63 7.11 56.52 0.40 -6.23 15 14 N -0.38 -8.00 2.96 -54.85 -0.16 -8.16 15 15 C -0.03 -0.62 6.74 -84.09 -0.57 -1.18 15 16 C -0.06 -0.88 10.10 -39.38 -0.40 -1.28 15 17 C -0.14 -1.76 10.07 -39.47 -0.40 -2.16 15 18 C -0.14 -2.04 9.71 -39.83 -0.39 -2.43 15 19 C 0.14 2.67 7.25 -16.41 -0.12 2.55 15 20 Cl 0.01 0.11 25.76 -51.86 -1.34 -1.22 15 21 H 0.07 0.81 8.14 -51.93 -0.42 0.39 15 22 H 0.06 0.73 8.14 -51.93 -0.42 0.30 15 23 H 0.07 1.01 8.14 -51.93 -0.42 0.58 15 24 H 0.05 1.34 5.63 -51.93 -0.29 1.05 15 25 H 0.05 1.47 8.14 -51.93 -0.42 1.05 15 26 H 0.26 7.21 8.31 -40.82 -0.34 6.87 15 27 H 0.14 1.46 8.06 -52.49 -0.42 1.03 15 28 H 0.14 1.20 8.06 -52.49 -0.42 0.78 15 29 H 0.15 1.68 8.06 -52.49 -0.42 1.26 15 LS Contribution 270.46 15.07 4.08 4.08 Total: -1.00 -31.64 270.46 -8.31 -39.95 By element: Atomic # 1 Polarization: -1.62 SS G_CDS: -2.79 Total: -4.41 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: -3.74 Total: -10.93 kcal Atomic # 7 Polarization: -44.65 SS G_CDS: 0.50 Total: -44.14 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 17 Polarization: 0.11 SS G_CDS: -1.34 Total: -1.22 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -31.64 -8.31 -39.95 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259754440.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.983 kcal (2) G-P(sol) polarization free energy of solvation -31.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds