Wall clock time and date at job start Mon Mar 30 2020 06:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33405 * 126.20688 * 2 1 4 4 C 1.30895 * 109.91223 * 180.02562 * 3 2 1 5 5 C 1.50706 * 125.37221 * 180.02562 * 4 3 2 6 6 C 1.50698 * 109.47294 * 90.02518 * 5 4 3 7 7 H 1.08005 * 119.99819 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00046 * 180.02562 * 6 5 4 9 9 N 1.31518 * 119.99944 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99979 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47418 * 89.99710 * 10 8 6 12 12 H 1.48498 * 109.47091 * 209.99770 * 10 8 6 13 13 H 1.48498 * 109.46997 * 329.99580 * 10 8 6 14 14 N 1.35626 * 109.25351 * 0.26506 * 4 3 2 15 15 C 1.37985 * 126.20678 * 180.02562 * 2 1 3 16 16 C 1.40983 * 133.69632 * 359.97438 * 15 2 1 17 17 C 1.35896 * 119.19635 * 179.97438 * 16 15 2 18 18 C 1.40753 * 119.79102 * 0.02562 * 17 16 15 19 19 C 1.34874 * 120.59136 * 359.97345 * 18 17 16 20 20 Cl 1.73594 * 119.73515 * 180.02562 * 19 18 17 21 21 H 1.08997 * 109.47452 * 89.97223 * 1 2 3 22 22 H 1.08994 * 109.46910 * 209.97410 * 1 2 3 23 23 H 1.09006 * 109.46942 * 329.97413 * 1 2 3 24 24 H 1.09001 * 109.46953 * 210.01960 * 5 4 3 25 25 H 1.09000 * 109.47318 * 330.01558 * 5 4 3 26 26 H 0.96997 * 119.99752 * 180.02562 * 9 8 6 27 27 H 1.07998 * 120.40045 * 359.95675 * 16 15 2 28 28 H 1.08000 * 120.10396 * 179.97438 * 17 16 15 29 29 H 1.08000 * 119.70723 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2950 1.0764 0.0000 4 6 3.5514 0.7092 -0.0006 5 6 4.7335 1.6439 -0.0002 6 6 5.1283 1.9540 1.4207 7 1 4.5780 1.5182 2.2415 8 6 6.1914 2.7949 1.6730 9 7 6.8613 3.3260 0.6735 10 14 6.6803 3.1799 3.4343 11 1 7.6786 2.1839 3.8999 12 1 7.2719 4.5405 3.4976 13 1 5.4792 3.1213 4.3054 14 7 3.6214 -0.6453 -0.0069 15 6 2.3221 -1.1134 -0.0005 16 6 2.0749 -2.5014 -0.0007 17 6 3.1266 -3.3620 -0.0017 18 6 4.4414 -2.8595 -0.0021 19 6 4.6681 -1.5300 -0.0020 20 17 6.2987 -0.9345 -0.0031 21 1 -0.3634 0.0005 -1.0276 22 1 -0.3633 -0.8902 0.5134 23 1 -0.3633 0.8898 0.5143 24 1 5.5703 1.1716 -0.5149 25 1 4.4664 2.5678 -0.5131 26 1 7.6094 3.9173 0.8510 27 1 1.0620 -2.8761 0.0003 28 1 2.9541 -4.4281 -0.0015 29 1 5.2762 -3.5447 -0.0034 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259754440.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:12 Heat of formation + Delta-G solvation = 50.244629 kcal Electronic energy + Delta-G solvation = -15802.111703 eV Core-core repulsion = 13137.197529 eV Total energy + Delta-G solvation = -2664.914174 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.68756 -38.69635 -37.55879 -35.57403 -34.56468 -32.30697 -31.20649 -30.42077 -26.95122 -25.23040 -24.64158 -22.32868 -21.58908 -18.69336 -18.22598 -17.80538 -16.93838 -16.75655 -16.40954 -16.00014 -14.96474 -14.44188 -14.34533 -14.13580 -13.73387 -13.39106 -13.20103 -13.05649 -12.91463 -12.79955 -12.68881 -12.28098 -12.02699 -11.69108 -11.45701 -11.29036 -11.10566 -10.58718 -10.17424 -8.36081 -8.05172 -6.33272 -0.24911 0.29361 0.66034 1.35186 1.36883 1.47678 1.71251 2.04639 2.39961 2.42880 3.09480 3.61545 3.70620 3.87795 3.89804 4.14670 4.39198 4.57591 4.82389 4.89337 4.91602 5.02245 5.05662 5.20239 5.23376 5.41679 5.62269 5.66669 5.83341 6.00353 6.20177 6.69926 7.08214 7.32819 8.87484 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.022995 B = 0.008716 C = 0.007086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.384183 B = 3211.548164 C = 3950.714314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 C -0.016 4.016 3 N -0.495 5.495 4 C 0.193 3.807 5 C 0.101 3.899 6 C -0.512 4.512 7 H 0.037 0.963 8 C 0.020 3.980 9 N -0.921 5.921 10 Si 0.956 3.044 11 H -0.268 1.268 12 H -0.275 1.275 13 H -0.274 1.274 14 N -0.377 5.377 15 C -0.030 4.030 16 C -0.061 4.061 17 C -0.120 4.120 18 C -0.104 4.104 19 C 0.085 3.915 20 Cl -0.019 7.019 21 H 0.082 0.918 22 H 0.099 0.901 23 H 0.063 0.937 24 H 0.045 0.955 25 H 0.012 0.988 26 H 0.267 0.733 27 H 0.189 0.811 28 H 0.193 0.807 29 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.686 -16.795 -1.496 18.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.152 4.152 3 N -0.210 5.210 4 C -0.063 4.063 5 C 0.062 3.938 6 C -0.551 4.551 7 H 0.055 0.945 8 C -0.179 4.179 9 N -0.560 5.560 10 Si 0.781 3.219 11 H -0.193 1.193 12 H -0.200 1.200 13 H -0.199 1.199 14 N -0.051 5.051 15 C -0.137 4.137 16 C -0.081 4.081 17 C -0.140 4.140 18 C -0.126 4.126 19 C -0.043 4.043 20 Cl 0.010 6.990 21 H 0.101 0.899 22 H 0.118 0.882 23 H 0.082 0.918 24 H 0.063 0.937 25 H 0.030 0.970 26 H 0.076 0.924 27 H 0.206 0.794 28 H 0.210 0.790 29 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -7.550 -15.720 -1.557 17.508 hybrid contribution 1.172 0.351 0.723 1.421 sum -6.377 -15.369 -0.834 16.660 Atomic orbital electron populations 1.20093 0.83809 1.03761 1.03306 1.21872 0.98216 0.86148 1.08930 1.69903 1.00392 1.31629 1.19095 1.24182 0.95550 0.80200 1.06361 1.17764 0.87203 0.90860 0.97954 1.20895 1.14365 1.28838 0.91030 0.94488 1.25657 0.95822 0.95171 1.01284 1.70041 1.21117 1.32232 1.32605 0.85584 0.78458 0.78046 0.79852 1.19347 1.19985 1.19880 1.43055 1.06914 1.07097 1.48031 1.20040 0.82291 0.96940 1.14394 1.21060 1.02960 0.86594 0.97469 1.21461 0.89252 1.02536 1.00766 1.21237 1.01558 0.89616 1.00216 1.21530 0.82020 0.90169 1.10530 1.98461 1.14955 1.88834 1.96765 0.89928 0.88202 0.91773 0.93723 0.97004 0.92389 0.79419 0.79006 0.79877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.35 10.44 71.24 0.74 -0.61 15 2 C -0.02 -0.63 7.20 42.26 0.30 -0.33 15 3 N -0.49 -24.44 11.19 -173.74 -1.94 -26.38 15 4 C 0.19 9.87 7.17 137.83 0.99 10.86 15 5 C 0.10 5.75 4.79 29.10 0.14 5.89 15 6 C -0.51 -30.43 9.05 25.60 0.23 -30.20 15 7 H 0.04 2.26 7.74 -2.91 -0.02 2.24 15 8 C 0.02 1.15 5.46 84.65 0.46 1.61 15 9 N -0.92 -55.35 13.29 21.45 0.28 -55.07 15 10 Si 0.96 45.48 29.54 68.60 2.03 47.51 15 11 H -0.27 -12.18 7.11 99.48 0.71 -11.48 15 12 H -0.27 -12.57 7.11 99.48 0.71 -11.86 15 13 H -0.27 -12.97 7.11 99.48 0.71 -12.26 15 14 N -0.38 -16.11 2.96 -327.43 -0.97 -17.08 15 15 C -0.03 -1.08 6.74 38.77 0.26 -0.82 15 16 C -0.06 -1.40 10.10 22.40 0.23 -1.17 15 17 C -0.12 -2.28 10.07 22.34 0.22 -2.05 15 18 C -0.10 -2.60 9.71 22.11 0.21 -2.39 15 19 C 0.08 3.10 7.25 83.10 0.60 3.70 15 20 Cl -0.02 -0.75 25.76 -2.72 -0.07 -0.82 15 21 H 0.08 1.83 8.14 -2.39 -0.02 1.81 15 22 H 0.10 1.82 8.14 -2.39 -0.02 1.81 15 23 H 0.06 1.74 8.14 -2.38 -0.02 1.72 15 24 H 0.04 2.54 5.63 -2.39 -0.01 2.52 15 25 H 0.01 0.74 8.14 -2.39 -0.02 0.72 15 26 H 0.27 15.04 8.31 -92.71 -0.77 14.27 15 27 H 0.19 2.50 8.06 -2.91 -0.02 2.47 15 28 H 0.19 1.64 8.06 -2.91 -0.02 1.62 15 29 H 0.18 3.22 8.06 -2.91 -0.02 3.19 15 Total: -1.00 -75.47 270.46 4.89 -70.58 By element: Atomic # 1 Polarization: -4.39 SS G_CDS: 1.17 Total: -3.22 kcal Atomic # 6 Polarization: -19.90 SS G_CDS: 4.40 Total: -15.50 kcal Atomic # 7 Polarization: -95.90 SS G_CDS: -2.63 Total: -98.53 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -0.07 Total: -0.82 kcal Total: -75.47 4.89 -70.58 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259754440.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.822 kcal (2) G-P(sol) polarization free energy of solvation -75.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds