Wall clock time and date at job start Mon Mar 30 2020 06:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34651 * 119.72770 * 2 1 4 4 C 1.40836 * 120.62692 * 180.02562 * 3 2 1 5 5 C 1.35876 * 119.79697 * 359.97438 * 4 3 2 6 6 C 1.40941 * 119.17928 * 0.02562 * 5 4 3 7 7 C 1.38067 * 133.73652 * 179.97438 * 6 5 4 8 8 Cl 1.73602 * 126.27406 * 0.03414 * 7 6 5 9 9 N 1.33407 * 107.44770 * 179.97438 * 7 6 5 10 10 C 1.30965 * 109.88120 * 0.02562 * 9 7 6 11 11 C 1.50706 * 125.30195 * 179.97438 * 10 9 7 12 12 C 1.50699 * 109.46817 * 90.02703 * 11 10 9 13 13 H 1.08003 * 119.99962 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00270 * 180.02562 * 12 11 10 15 15 N 1.31522 * 119.99835 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00390 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.46946 * 59.99892 * 16 14 12 18 18 H 1.48496 * 109.46933 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46921 * 299.99575 * 16 14 12 20 20 N 1.34975 * 109.39386 * 0.26262 * 10 9 7 21 21 H 1.09005 * 109.47325 * 90.00085 * 1 2 3 22 22 H 1.08998 * 109.47853 * 210.00120 * 1 2 3 23 23 H 1.09005 * 109.47570 * 330.00604 * 1 2 3 24 24 H 1.08003 * 119.68320 * 0.02562 * 3 2 1 25 25 H 1.08003 * 120.10351 * 180.02562 * 4 3 2 26 26 H 1.08002 * 120.41524 * 180.02562 * 5 4 3 27 27 H 1.09000 * 109.47318 * 210.02082 * 11 10 9 28 28 H 1.09000 * 109.47161 * 330.02713 * 11 10 9 29 29 H 0.96992 * 120.00038 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1747 1.1693 0.0000 4 6 3.5828 1.1914 -0.0005 5 6 4.2765 0.0230 -0.0005 6 6 3.5691 -1.1960 -0.0005 7 6 3.9529 -2.5223 -0.0010 8 17 5.5828 -3.1199 -0.0009 9 7 2.8415 -3.2603 -0.0002 10 6 1.7892 -2.4807 0.0002 11 6 0.3573 -2.9506 0.0006 12 6 -0.1197 -3.1066 1.4216 13 1 0.5474 -2.8879 2.2422 14 6 -1.4075 -3.5297 1.6740 15 7 -2.2198 -3.7965 0.6746 16 14 -1.9990 -3.7225 3.4354 17 1 -1.9073 -2.4154 4.1341 18 1 -3.4099 -4.1855 3.4357 19 1 -1.1502 -4.7192 4.1362 20 7 2.1869 -1.1909 -0.0062 21 1 -0.3634 0.0000 -1.0277 22 1 -0.3635 -0.8899 0.5138 23 1 -0.3634 0.8901 0.5137 24 1 1.6250 2.0990 0.0004 25 1 4.1098 2.1341 -0.0001 26 1 5.3565 0.0283 -0.0005 27 1 -0.2656 -2.2184 -0.5133 28 1 0.2894 -3.9096 -0.5129 29 1 -3.1256 -4.0944 0.8521 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259759308.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:50 Heat of formation + Delta-G solvation = 68.878459 kcal Electronic energy + Delta-G solvation = -15800.809263 eV Core-core repulsion = 13136.703112 eV Total energy + Delta-G solvation = -2664.106150 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.37548 -37.31640 -36.19476 -34.18799 -32.93527 -31.17343 -29.77152 -28.03050 -25.76972 -23.33863 -22.75115 -21.82344 -19.82861 -16.95868 -16.60930 -16.19298 -15.44032 -15.37746 -14.79421 -14.62877 -13.53855 -13.10367 -12.77843 -12.56660 -12.33424 -12.10081 -11.83554 -11.52526 -11.17648 -11.01371 -10.96708 -10.79790 -10.35779 -10.05124 -9.87224 -9.61634 -9.59749 -8.77261 -8.58162 -6.85677 -6.19494 -4.26653 1.12461 1.61918 2.26320 3.15746 3.24778 3.29606 3.33263 3.55473 3.69044 4.33268 4.74792 4.95427 5.08400 5.15779 5.27468 5.29896 5.52600 5.82661 5.91289 5.96224 6.19813 6.30031 6.44929 6.55335 6.74148 7.02293 7.16929 7.29904 7.66633 7.73760 8.06213 8.43664 8.76013 9.38281 10.87913 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.022128 B = 0.007818 C = 0.006383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.046479 B = 3580.682456 C = 4385.775302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.121 3.879 3 C -0.166 4.166 4 C -0.120 4.120 5 C -0.085 4.085 6 C -0.003 4.003 7 C 0.048 3.952 8 Cl -0.021 7.021 9 N -0.454 5.454 10 C 0.252 3.748 11 C 0.088 3.912 12 C -0.519 4.519 13 H 0.057 0.943 14 C 0.066 3.934 15 N -0.888 5.888 16 Si 0.898 3.102 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.274 1.274 20 N -0.365 5.365 21 H 0.080 0.920 22 H 0.126 0.874 23 H 0.079 0.921 24 H 0.142 0.858 25 H 0.131 0.869 26 H 0.138 0.862 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.203 10.116 -2.097 13.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.018 3.982 3 C -0.187 4.187 4 C -0.141 4.141 5 C -0.104 4.104 6 C -0.112 4.112 7 C -0.112 4.112 8 Cl 0.007 6.993 9 N -0.169 5.169 10 C -0.006 4.006 11 C 0.050 3.950 12 C -0.558 4.558 13 H 0.076 0.924 14 C -0.137 4.137 15 N -0.526 5.526 16 Si 0.726 3.274 17 H -0.201 1.201 18 H -0.210 1.210 19 H -0.199 1.199 20 N -0.037 5.037 21 H 0.098 0.902 22 H 0.144 0.856 23 H 0.098 0.902 24 H 0.160 0.840 25 H 0.148 0.852 26 H 0.156 0.844 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 8.016 9.080 -2.160 12.303 hybrid contribution 0.055 0.607 0.977 1.151 sum 8.071 9.687 -1.183 12.664 Atomic orbital electron populations 1.21455 0.87346 1.07141 1.04104 1.20477 0.95553 0.83321 0.98804 1.20510 0.94535 0.96436 1.07179 1.20898 0.93706 0.97922 1.01601 1.20300 0.99735 0.89177 1.01214 1.18810 0.83328 0.94862 1.14167 1.20585 0.87828 0.87487 1.15338 1.98294 1.14587 1.88908 1.97522 1.69767 0.95898 1.32532 1.18695 1.24559 0.98567 0.75763 1.01675 1.18214 0.79238 0.98367 0.99213 1.20859 0.97328 1.46828 0.90761 0.92447 1.24936 0.96440 0.94688 0.97597 1.69921 1.07117 1.44654 1.30889 0.86537 0.77745 0.78819 0.84339 1.20090 1.21020 1.19938 1.42911 1.06268 1.06987 1.47527 0.90177 0.85601 0.90188 0.84043 0.85158 0.84384 0.93229 0.92587 0.92372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 8.70 36.00 0.31 -2.01 15 2 C 0.12 2.07 6.79 -81.49 -0.55 1.52 15 3 C -0.17 -2.30 9.57 -39.87 -0.38 -2.68 15 4 C -0.12 -1.57 10.07 -39.45 -0.40 -1.97 15 5 C -0.08 -1.27 10.11 -39.41 -0.40 -1.67 15 6 C 0.00 -0.05 6.80 -84.02 -0.57 -0.62 15 7 C 0.05 0.99 7.84 -16.93 -0.13 0.86 15 8 Cl -0.02 -0.36 29.32 -51.86 -1.52 -1.88 15 9 N -0.45 -10.77 11.20 -7.30 -0.08 -10.85 15 10 C 0.25 5.86 7.12 -155.09 -1.10 4.76 15 11 C 0.09 2.18 4.63 -29.03 -0.13 2.05 15 12 C -0.52 -13.82 7.93 -34.44 -0.27 -14.09 15 13 H 0.06 1.58 7.74 -52.48 -0.41 1.17 15 14 C 0.07 1.76 5.46 -17.82 -0.10 1.67 15 15 N -0.89 -24.35 13.29 55.43 0.74 -23.61 15 16 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 15 17 H -0.28 -6.20 7.11 56.52 0.40 -5.80 15 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 15 19 H -0.27 -6.39 7.11 56.52 0.40 -5.99 15 20 N -0.36 -7.45 2.95 -53.94 -0.16 -7.61 15 21 H 0.08 1.18 8.14 -51.93 -0.42 0.76 15 22 H 0.13 2.53 4.38 -51.93 -0.23 2.30 15 23 H 0.08 1.04 8.07 -51.93 -0.42 0.62 15 24 H 0.14 1.49 8.06 -52.48 -0.42 1.06 15 25 H 0.13 1.23 8.06 -52.48 -0.42 0.81 15 26 H 0.14 1.69 8.06 -52.49 -0.42 1.27 15 27 H 0.05 1.19 5.61 -51.93 -0.29 0.89 15 28 H 0.06 1.50 8.14 -51.93 -0.42 1.08 15 29 H 0.27 6.95 8.31 -40.82 -0.34 6.61 15 LS Contribution 267.19 15.07 4.03 4.03 Total: -1.00 -29.37 267.19 -8.34 -37.71 By element: Atomic # 1 Polarization: 1.35 SS G_CDS: -2.59 Total: -1.24 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: -3.73 Total: -12.19 kcal Atomic # 7 Polarization: -42.57 SS G_CDS: 0.50 Total: -42.07 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -1.52 Total: -1.88 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -29.37 -8.34 -37.71 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259759308.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.587 kcal (2) G-P(sol) polarization free energy of solvation -29.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds