Wall clock time and date at job start Mon Mar 30 2020 06:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34651 * 119.72770 * 2 1 4 4 C 1.40836 * 120.62692 * 180.02562 * 3 2 1 5 5 C 1.35876 * 119.79697 * 359.97438 * 4 3 2 6 6 C 1.40941 * 119.17928 * 0.02562 * 5 4 3 7 7 C 1.38067 * 133.73652 * 179.97438 * 6 5 4 8 8 Cl 1.73602 * 126.27406 * 0.03414 * 7 6 5 9 9 N 1.33407 * 107.44770 * 179.97438 * 7 6 5 10 10 C 1.30965 * 109.88120 * 0.02562 * 9 7 6 11 11 C 1.50706 * 125.30195 * 179.97438 * 10 9 7 12 12 C 1.50699 * 109.46817 * 90.02703 * 11 10 9 13 13 H 1.08003 * 119.99962 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00270 * 180.02562 * 12 11 10 15 15 N 1.31522 * 119.99835 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00390 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.46946 * 59.99892 * 16 14 12 18 18 H 1.48496 * 109.46933 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46921 * 299.99575 * 16 14 12 20 20 N 1.34975 * 109.39386 * 0.26262 * 10 9 7 21 21 H 1.09005 * 109.47325 * 90.00085 * 1 2 3 22 22 H 1.08998 * 109.47853 * 210.00120 * 1 2 3 23 23 H 1.09005 * 109.47570 * 330.00604 * 1 2 3 24 24 H 1.08003 * 119.68320 * 0.02562 * 3 2 1 25 25 H 1.08003 * 120.10351 * 180.02562 * 4 3 2 26 26 H 1.08002 * 120.41524 * 180.02562 * 5 4 3 27 27 H 1.09000 * 109.47318 * 210.02082 * 11 10 9 28 28 H 1.09000 * 109.47161 * 330.02713 * 11 10 9 29 29 H 0.96992 * 120.00038 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1747 1.1693 0.0000 4 6 3.5828 1.1914 -0.0005 5 6 4.2765 0.0230 -0.0005 6 6 3.5691 -1.1960 -0.0005 7 6 3.9529 -2.5223 -0.0010 8 17 5.5828 -3.1199 -0.0009 9 7 2.8415 -3.2603 -0.0002 10 6 1.7892 -2.4807 0.0002 11 6 0.3573 -2.9506 0.0006 12 6 -0.1197 -3.1066 1.4216 13 1 0.5474 -2.8879 2.2422 14 6 -1.4075 -3.5297 1.6740 15 7 -2.2198 -3.7965 0.6746 16 14 -1.9990 -3.7225 3.4354 17 1 -1.9073 -2.4154 4.1341 18 1 -3.4099 -4.1855 3.4357 19 1 -1.1502 -4.7192 4.1362 20 7 2.1869 -1.1909 -0.0062 21 1 -0.3634 0.0000 -1.0277 22 1 -0.3635 -0.8899 0.5138 23 1 -0.3634 0.8901 0.5137 24 1 1.6250 2.0990 0.0004 25 1 4.1098 2.1341 -0.0001 26 1 5.3565 0.0283 -0.0005 27 1 -0.2656 -2.2184 -0.5133 28 1 0.2894 -3.9096 -0.5129 29 1 -3.1256 -4.0944 0.8521 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259759308.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:50 Heat of formation + Delta-G solvation = 52.522469 kcal Electronic energy + Delta-G solvation = -15801.518512 eV Core-core repulsion = 13136.703112 eV Total energy + Delta-G solvation = -2664.815399 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.84200 -38.65222 -37.57757 -35.86804 -34.57475 -32.65508 -31.50090 -29.41790 -27.32785 -25.12843 -24.11150 -23.28680 -21.32379 -18.70852 -18.30152 -17.49444 -16.98585 -16.75165 -16.40652 -16.10766 -14.84577 -14.52037 -14.44953 -14.25046 -14.14185 -13.25377 -13.16909 -12.92342 -12.84114 -12.65207 -12.40344 -12.34267 -12.02629 -11.87699 -11.52779 -11.26089 -11.19101 -10.63550 -10.18371 -8.39397 -8.09969 -6.37765 -0.10604 0.26423 0.84443 1.39434 1.42419 1.49993 1.73152 1.92512 2.39422 2.46868 3.06535 3.47995 3.72950 3.81730 3.89046 4.08388 4.22750 4.67233 4.69225 4.77308 4.84422 5.06825 5.13800 5.20433 5.28719 5.35778 5.45600 5.64849 5.78653 5.99505 6.24459 6.67061 6.85499 7.30176 8.84024 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.022128 B = 0.007818 C = 0.006383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.046479 B = 3580.682456 C = 4385.775302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.073 3.927 3 C -0.136 4.136 4 C -0.093 4.093 5 C -0.102 4.102 6 C 0.007 3.993 7 C 0.009 3.991 8 Cl 0.001 6.999 9 N -0.488 5.488 10 C 0.204 3.796 11 C 0.105 3.895 12 C -0.527 4.527 13 H 0.041 0.959 14 C 0.024 3.976 15 N -0.916 5.916 16 Si 0.959 3.041 17 H -0.264 1.264 18 H -0.275 1.275 19 H -0.279 1.279 20 N -0.363 5.363 21 H 0.085 0.915 22 H 0.081 0.919 23 H 0.114 0.886 24 H 0.188 0.812 25 H 0.184 0.816 26 H 0.168 0.832 27 H 0.051 0.949 28 H 0.017 0.983 29 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.294 13.666 -1.412 16.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.028 4.028 3 C -0.156 4.156 4 C -0.114 4.114 5 C -0.121 4.121 6 C -0.103 4.103 7 C -0.151 4.151 8 Cl 0.029 6.971 9 N -0.204 5.204 10 C -0.053 4.053 11 C 0.067 3.933 12 C -0.566 4.566 13 H 0.059 0.941 14 C -0.176 4.176 15 N -0.555 5.555 16 Si 0.784 3.216 17 H -0.188 1.188 18 H -0.200 1.200 19 H -0.205 1.205 20 N -0.034 5.034 21 H 0.103 0.897 22 H 0.099 0.901 23 H 0.132 0.868 24 H 0.205 0.795 25 H 0.202 0.798 26 H 0.186 0.814 27 H 0.069 0.931 28 H 0.035 0.965 29 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 9.096 12.638 -1.480 15.641 hybrid contribution -0.156 -0.279 0.718 0.786 sum 8.941 12.360 -0.762 15.273 Atomic orbital electron populations 1.21349 0.87279 1.06503 1.04304 1.21027 0.96259 0.83367 1.02181 1.21206 0.95427 0.96570 1.02373 1.21573 0.93328 0.99257 0.97220 1.20783 1.01329 0.88025 1.01997 1.19453 0.83027 0.95907 1.11955 1.20879 0.88242 0.88211 1.17785 1.98276 1.12368 1.88842 1.97586 1.69577 0.97273 1.34336 1.19231 1.23828 0.97603 0.77490 1.06366 1.17801 0.81186 0.96448 0.97894 1.20953 0.97427 1.46989 0.91223 0.94106 1.25667 0.96369 0.94179 1.01401 1.70014 1.07451 1.45252 1.32744 0.85592 0.77386 0.78982 0.79677 1.18837 1.19957 1.20497 1.42965 1.07092 1.06915 1.46429 0.89690 0.90053 0.86783 0.79501 0.79828 0.81433 0.93115 0.96489 0.92081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.35 8.70 71.23 0.62 -3.73 15 2 C 0.07 2.37 6.79 40.90 0.28 2.65 15 3 C -0.14 -3.06 9.57 22.08 0.21 -2.85 15 4 C -0.09 -1.85 10.07 22.36 0.23 -1.62 15 5 C -0.10 -2.66 10.11 22.38 0.23 -2.44 15 6 C 0.01 0.27 6.80 38.76 0.26 0.54 15 7 C 0.01 0.36 7.84 84.41 0.66 1.02 15 8 Cl 0.00 0.04 29.32 -2.72 -0.08 -0.04 15 9 N -0.49 -24.45 11.20 -177.02 -1.98 -26.44 15 10 C 0.20 10.04 7.12 138.02 0.98 11.03 15 11 C 0.11 5.61 4.63 29.10 0.13 5.74 15 12 C -0.53 -29.57 7.93 25.60 0.20 -29.37 15 13 H 0.04 2.36 7.74 -2.91 -0.02 2.34 15 14 C 0.02 1.33 5.46 84.65 0.46 1.79 15 15 N -0.92 -51.95 13.29 21.45 0.28 -51.67 15 16 Si 0.96 43.09 29.54 68.60 2.03 45.12 15 17 H -0.26 -11.26 7.11 99.48 0.71 -10.55 15 18 H -0.27 -11.81 7.11 99.48 0.71 -11.11 15 19 H -0.28 -12.72 7.11 99.48 0.71 -12.01 15 20 N -0.36 -14.90 2.95 -324.58 -0.96 -15.85 15 21 H 0.08 2.49 8.14 -2.38 -0.02 2.47 15 22 H 0.08 3.38 4.38 -2.39 -0.01 3.37 15 23 H 0.11 2.67 8.07 -2.38 -0.02 2.65 15 24 H 0.19 2.55 8.06 -2.91 -0.02 2.52 15 25 H 0.18 1.85 8.06 -2.91 -0.02 1.83 15 26 H 0.17 3.34 8.06 -2.91 -0.02 3.32 15 27 H 0.05 2.62 5.61 -2.39 -0.01 2.60 15 28 H 0.02 1.00 8.14 -2.39 -0.02 0.98 15 29 H 0.27 14.38 8.31 -92.71 -0.77 13.61 15 Total: -1.00 -68.82 267.19 4.74 -64.08 By element: Atomic # 1 Polarization: 0.85 SS G_CDS: 1.18 Total: 2.03 kcal Atomic # 6 Polarization: -21.50 SS G_CDS: 4.27 Total: -17.23 kcal Atomic # 7 Polarization: -91.30 SS G_CDS: -2.65 Total: -93.96 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 17 Polarization: 0.04 SS G_CDS: -0.08 Total: -0.04 kcal Total: -68.82 4.74 -64.08 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259759308.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.607 kcal (2) G-P(sol) polarization free energy of solvation -68.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds