Wall clock time and date at job start Mon Mar 30 2020 05:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 120.00020 * 2 1 4 4 H 1.48500 * 109.47329 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47383 * 300.00365 * 3 2 1 6 6 H 1.48507 * 109.47030 * 60.00201 * 3 2 1 7 7 C 1.37876 * 119.99863 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99736 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00290 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47526 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47526 * 180.02562 * 10 9 7 12 12 C 1.38738 * 119.79449 * 269.98271 * 11 10 9 13 13 C 1.37872 * 120.68625 * 180.02562 * 12 11 10 14 14 C 1.38915 * 119.82297 * 359.97438 * 13 12 11 15 15 O 1.34834 * 133.47179 * 179.68772 * 14 13 12 16 16 C 1.34449 * 110.89615 * 179.97438 * 15 14 13 17 17 Cl 1.73602 * 124.94020 * 180.15827 * 16 15 14 18 18 C 1.34176 * 110.12370 * 0.38004 * 16 15 14 19 19 C 1.40505 * 119.21983 * 0.02562 * 14 13 12 20 20 C 1.36748 * 119.79433 * 89.99592 * 11 10 9 21 21 H 0.97003 * 120.00090 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.46975 * 60.00080 * 9 7 2 23 23 H 1.09004 * 109.47267 * 300.00423 * 9 7 2 24 24 H 1.08997 * 109.47290 * 59.99830 * 10 9 7 25 25 H 1.08995 * 109.47082 * 300.00267 * 10 9 7 26 26 H 1.07998 * 119.65555 * 0.03904 * 12 11 10 27 27 H 1.08001 * 120.08789 * 180.02562 * 13 12 11 28 28 H 1.07995 * 126.91931 * 179.80227 * 18 16 15 29 29 H 1.08002 * 120.13905 * 359.96136 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4918 -4.9672 -0.0012 12 6 1.1470 -5.5647 1.2025 13 6 0.4582 -6.7589 1.2234 14 6 0.1036 -7.3728 0.0288 15 8 -0.5489 -8.5145 -0.2695 16 6 -0.6471 -8.6769 -1.6005 17 17 -1.4206 -10.0192 -2.3839 18 6 -0.0561 -7.6532 -2.2354 19 6 0.4556 -6.7627 -1.1869 20 6 1.1524 -5.5553 -1.1882 21 1 -0.4850 0.8401 0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6247 -2.5571 0.8897 24 1 2.8719 -3.6044 0.8894 25 1 2.8719 -3.6043 -0.8905 26 1 1.4209 -5.0894 2.1328 27 1 0.1944 -7.2154 2.1660 28 1 0.0257 -7.5123 -3.3029 29 1 1.4226 -5.0860 -2.1226 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259782670.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:26 Heat of formation + Delta-G solvation = 10.193578 kcal Electronic energy + Delta-G solvation = -14874.907341 eV Core-core repulsion = 12175.963672 eV Total energy + Delta-G solvation = -2698.943669 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.050 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.40577 -38.20142 -37.16624 -33.89242 -32.74804 -31.89268 -29.29015 -28.61307 -25.17535 -22.92005 -22.06580 -21.35594 -20.29512 -17.55287 -17.22260 -16.40151 -16.31642 -14.97433 -14.48944 -14.34611 -13.96744 -13.20268 -13.05222 -12.77415 -12.53574 -12.43720 -11.99215 -11.82420 -11.54841 -11.00001 -10.92261 -10.75795 -10.54444 -10.03418 -9.88013 -9.64535 -9.12966 -8.38550 -8.14461 -8.04160 -6.02664 -4.06012 0.93872 0.97726 1.57250 2.25532 3.25522 3.29400 3.37162 3.40843 3.92442 4.43794 4.69186 4.89015 5.00023 5.22386 5.33105 5.52420 5.58349 5.69226 5.86754 6.08697 6.34903 6.37564 6.51096 6.57890 6.67979 6.96281 6.97430 7.22682 7.64400 7.76577 7.96711 8.36736 9.01291 9.58416 11.08299 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.048651 B = 0.003918 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.394718 B = 7144.476262 C = 7377.744760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.028 3.972 10 C -0.078 4.078 11 C -0.068 4.068 12 C -0.079 4.079 13 C -0.108 4.108 14 C 0.048 3.952 15 O -0.193 6.193 16 C 0.056 3.944 17 Cl 0.019 6.981 18 C -0.163 4.163 19 C -0.128 4.128 20 C -0.069 4.069 21 H 0.260 0.740 22 H 0.018 0.982 23 H 0.018 0.982 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.138 0.862 27 H 0.131 0.869 28 H 0.166 0.834 29 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.237 -17.181 -2.360 17.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.075 0.925 9 C -0.009 4.009 10 C -0.116 4.116 11 C -0.068 4.068 12 C -0.097 4.097 13 C -0.127 4.127 14 C 0.001 3.999 15 O -0.096 6.096 16 C -0.018 4.018 17 Cl 0.048 6.952 18 C -0.183 4.183 19 C -0.129 4.129 20 C -0.087 4.087 21 H 0.070 0.930 22 H 0.036 0.964 23 H 0.036 0.964 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.156 0.844 27 H 0.148 0.852 28 H 0.183 0.817 29 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.558 -17.366 -2.232 17.518 hybrid contribution 0.146 0.762 -0.220 0.807 sum -0.412 -16.604 -2.452 16.789 Atomic orbital electron populations 1.69983 1.06064 1.26555 1.50673 1.25034 0.94850 0.99307 0.95291 0.86535 0.80104 0.83759 0.77594 1.19698 1.21020 1.21015 1.21279 0.93105 0.90903 1.50773 0.92477 1.19100 0.93670 0.90470 0.97639 1.20848 0.98320 0.90704 1.01685 1.20056 0.97792 0.96986 0.91979 1.21005 0.96633 0.93179 0.98866 1.19891 1.02358 0.96277 0.94162 1.19456 0.98669 0.85657 0.96092 1.83805 1.64851 1.38609 1.22370 1.22087 1.03758 0.93874 0.82068 1.98425 1.79285 1.43356 1.74127 1.22200 1.02738 0.93292 1.00101 1.19724 1.03788 0.97668 0.91702 1.20210 0.97098 0.92442 0.98963 0.93006 0.96377 0.96356 0.91865 0.91960 0.84373 0.85154 0.81666 0.85191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.62 13.29 55.43 0.74 -25.88 15 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 15 3 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 15 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 15 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 15 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 15 7 C -0.52 -14.40 9.11 -34.44 -0.31 -14.71 15 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 15 9 C 0.03 0.71 4.95 -27.89 -0.14 0.57 15 10 C -0.08 -1.53 5.27 -27.89 -0.15 -1.68 15 11 C -0.07 -1.18 5.10 -104.98 -0.54 -1.72 15 12 C -0.08 -1.23 9.66 -39.53 -0.38 -1.61 15 13 C -0.11 -1.58 10.07 -39.46 -0.40 -1.98 15 14 C 0.05 0.75 7.42 -38.48 -0.29 0.47 15 15 O -0.19 -2.92 10.58 3.84 0.04 -2.88 15 16 C 0.06 0.75 7.84 29.30 0.23 0.97 15 17 Cl 0.02 0.20 29.28 -51.86 -1.52 -1.32 15 18 C -0.16 -2.19 11.09 -37.57 -0.42 -2.60 15 19 C -0.13 -2.03 6.40 -105.16 -0.67 -2.70 15 20 C -0.07 -1.14 9.68 -39.69 -0.38 -1.53 15 21 H 0.26 7.30 8.31 -40.82 -0.34 6.96 15 22 H 0.02 0.48 8.14 -51.93 -0.42 0.06 15 23 H 0.02 0.49 8.14 -51.93 -0.42 0.06 15 24 H 0.06 1.18 8.08 -51.93 -0.42 0.76 15 25 H 0.06 1.18 8.08 -51.93 -0.42 0.76 15 26 H 0.14 1.91 8.06 -52.49 -0.42 1.49 15 27 H 0.13 1.54 8.06 -52.49 -0.42 1.11 15 28 H 0.17 1.75 8.06 -52.49 -0.42 1.33 15 29 H 0.13 2.00 8.06 -52.49 -0.42 1.58 15 LS Contribution 276.77 15.07 4.17 4.17 Total: -1.00 -29.96 276.77 -8.05 -38.01 By element: Atomic # 1 Polarization: -0.46 SS G_CDS: -2.92 Total: -3.37 kcal Atomic # 6 Polarization: -21.47 SS G_CDS: -3.54 Total: -25.01 kcal Atomic # 7 Polarization: -26.62 SS G_CDS: 0.74 Total: -25.88 kcal Atomic # 8 Polarization: -2.92 SS G_CDS: 0.04 Total: -2.88 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 17 Polarization: 0.20 SS G_CDS: -1.52 Total: -1.32 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -29.96 -8.05 -38.01 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259782670.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.202 kcal (2) G-P(sol) polarization free energy of solvation -29.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds