Wall clock time and date at job start Mon Mar 30 2020 05:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 120.00020 * 2 1 4 4 H 1.48500 * 109.47329 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47383 * 300.00365 * 3 2 1 6 6 H 1.48507 * 109.47030 * 60.00201 * 3 2 1 7 7 C 1.37876 * 119.99863 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99736 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00290 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47526 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47526 * 180.02562 * 10 9 7 12 12 C 1.38738 * 119.79449 * 269.98271 * 11 10 9 13 13 C 1.37872 * 120.68625 * 180.02562 * 12 11 10 14 14 C 1.38915 * 119.82297 * 359.97438 * 13 12 11 15 15 O 1.34834 * 133.47179 * 179.68772 * 14 13 12 16 16 C 1.34449 * 110.89615 * 179.97438 * 15 14 13 17 17 Cl 1.73602 * 124.94020 * 180.15827 * 16 15 14 18 18 C 1.34176 * 110.12370 * 0.38004 * 16 15 14 19 19 C 1.40505 * 119.21983 * 0.02562 * 14 13 12 20 20 C 1.36748 * 119.79433 * 89.99592 * 11 10 9 21 21 H 0.97003 * 120.00090 * 359.97438 * 1 2 3 22 22 H 1.08997 * 109.46975 * 60.00080 * 9 7 2 23 23 H 1.09004 * 109.47267 * 300.00423 * 9 7 2 24 24 H 1.08997 * 109.47290 * 59.99830 * 10 9 7 25 25 H 1.08995 * 109.47082 * 300.00267 * 10 9 7 26 26 H 1.07998 * 119.65555 * 0.03904 * 12 11 10 27 27 H 1.08001 * 120.08789 * 180.02562 * 13 12 11 28 28 H 1.07995 * 126.91931 * 179.80227 * 18 16 15 29 29 H 1.08002 * 120.13905 * 359.96136 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4918 -4.9672 -0.0012 12 6 1.1470 -5.5647 1.2025 13 6 0.4582 -6.7589 1.2234 14 6 0.1036 -7.3728 0.0288 15 8 -0.5489 -8.5145 -0.2695 16 6 -0.6471 -8.6769 -1.6005 17 17 -1.4206 -10.0192 -2.3839 18 6 -0.0561 -7.6532 -2.2354 19 6 0.4556 -6.7627 -1.1869 20 6 1.1524 -5.5553 -1.1882 21 1 -0.4850 0.8401 0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6247 -2.5571 0.8897 24 1 2.8719 -3.6044 0.8894 25 1 2.8719 -3.6043 -0.8905 26 1 1.4209 -5.0894 2.1328 27 1 0.1944 -7.2154 2.1660 28 1 0.0257 -7.5123 -3.3029 29 1 1.4226 -5.0860 -2.1226 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259782670.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:48:26 Heat of formation + Delta-G solvation = -5.043766 kcal Electronic energy + Delta-G solvation = -14875.568082 eV Core-core repulsion = 12175.963672 eV Total energy + Delta-G solvation = -2699.604410 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.050 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.54292 -39.45663 -38.11257 -35.74462 -33.97603 -33.58178 -30.66487 -30.03501 -26.96650 -24.27038 -23.55598 -22.48294 -21.84775 -18.72082 -18.55563 -18.26260 -17.47971 -16.51766 -16.25973 -15.60812 -15.16118 -14.55341 -14.34011 -14.19479 -14.13529 -13.75841 -13.45444 -13.19190 -12.85252 -12.73408 -12.48696 -12.28647 -12.01814 -11.64615 -11.53986 -11.16084 -11.10553 -10.54168 -9.42635 -9.22010 -8.17723 -6.29162 -0.20270 -0.02897 0.31026 1.14611 1.42368 1.42926 1.56046 2.13913 2.42688 2.68210 3.15666 3.55026 3.77389 3.86313 4.02276 4.30854 4.39292 4.48991 4.66897 4.82002 4.90025 5.07699 5.13067 5.20480 5.28441 5.50907 5.53266 5.55463 5.85581 5.87232 6.00792 6.25299 6.88700 7.40375 8.93872 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.048651 B = 0.003918 C = 0.003794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.394718 B = 7144.476262 C = 7377.744760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.003 4.003 3 Si 0.965 3.035 4 H -0.259 1.259 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.540 4.540 8 H 0.065 0.935 9 C 0.034 3.966 10 C -0.063 4.063 11 C -0.088 4.088 12 C -0.086 4.086 13 C -0.102 4.102 14 C 0.035 3.965 15 O -0.200 6.200 16 C 0.052 3.948 17 Cl 0.047 6.953 18 C -0.165 4.165 19 C -0.143 4.143 20 C -0.078 4.078 21 H 0.262 0.738 22 H -0.011 1.011 23 H -0.007 1.007 24 H 0.073 0.927 25 H 0.066 0.934 26 H 0.153 0.847 27 H 0.160 0.840 28 H 0.192 0.808 29 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.407 -17.903 -2.438 18.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.790 3.210 4 H -0.183 1.183 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.578 4.578 8 H 0.083 0.917 9 C -0.003 4.003 10 C -0.100 4.100 11 C -0.088 4.088 12 C -0.104 4.104 13 C -0.120 4.120 14 C -0.012 4.012 15 O -0.103 6.103 16 C -0.021 4.021 17 Cl 0.076 6.924 18 C -0.185 4.185 19 C -0.144 4.144 20 C -0.096 4.096 21 H 0.071 0.929 22 H 0.007 0.993 23 H 0.011 0.989 24 H 0.091 0.909 25 H 0.085 0.915 26 H 0.171 0.829 27 H 0.178 0.822 28 H 0.209 0.791 29 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.098 -18.108 -2.314 18.255 hybrid contribution -0.129 0.862 -0.236 0.903 sum -0.031 -17.246 -2.551 17.433 Atomic orbital electron populations 1.70120 1.07866 1.27636 1.51857 1.25995 0.95729 1.03421 0.94866 0.85397 0.79219 0.78796 0.77616 1.18305 1.20643 1.20541 1.21749 0.93736 0.92107 1.50174 0.91684 1.18946 0.94066 0.92336 0.94922 1.20564 0.97192 0.89901 1.02377 1.19929 0.99055 0.96550 0.93268 1.21179 0.96768 0.93640 0.98779 1.20178 1.01073 0.95612 0.95144 1.19751 0.98837 0.86020 0.96597 1.83802 1.64812 1.38314 1.23414 1.22415 1.03480 0.94714 0.81502 1.98437 1.78683 1.41886 1.73387 1.22500 1.02320 0.92642 1.01007 1.19973 1.03810 0.97686 0.92941 1.20295 0.97379 0.92960 0.98958 0.92876 0.99309 0.98883 0.90875 0.91500 0.82927 0.82248 0.79128 0.84796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.73 13.29 21.45 0.28 -56.45 15 2 C 0.00 -0.15 5.46 84.65 0.46 0.32 15 3 Si 0.97 43.68 29.54 68.60 2.03 45.71 15 4 H -0.26 -11.08 7.11 99.48 0.71 -10.37 15 5 H -0.28 -12.46 7.11 99.48 0.71 -11.76 15 6 H -0.28 -12.38 7.11 99.48 0.71 -11.68 15 7 C -0.54 -30.00 9.11 25.60 0.23 -29.77 15 8 H 0.06 3.43 7.74 -2.91 -0.02 3.40 15 9 C 0.03 1.77 4.95 29.85 0.15 1.92 15 10 C -0.06 -2.48 5.27 29.85 0.16 -2.33 15 11 C -0.09 -3.06 5.10 -20.09 -0.10 -3.16 15 12 C -0.09 -2.61 9.66 22.30 0.22 -2.39 15 13 C -0.10 -2.83 10.07 22.35 0.23 -2.60 15 14 C 0.03 1.06 7.42 22.99 0.17 1.23 15 15 O -0.20 -5.76 10.58 -9.18 -0.10 -5.86 15 16 C 0.05 1.31 7.84 66.89 0.52 1.83 15 17 Cl 0.05 0.89 29.28 -2.72 -0.08 0.81 15 18 C -0.16 -4.17 11.09 23.58 0.26 -3.91 15 19 C -0.14 -4.43 6.40 -20.21 -0.13 -4.56 15 20 C -0.08 -2.58 9.68 22.20 0.21 -2.36 15 21 H 0.26 14.96 8.31 -92.71 -0.77 14.19 15 22 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 15 23 H -0.01 -0.40 8.14 -2.38 -0.02 -0.42 15 24 H 0.07 2.69 8.08 -2.39 -0.02 2.67 15 25 H 0.07 2.53 8.08 -2.39 -0.02 2.51 15 26 H 0.15 4.07 8.06 -2.91 -0.02 4.05 15 27 H 0.16 3.38 8.06 -2.91 -0.02 3.36 15 28 H 0.19 3.65 8.06 -2.91 -0.02 3.62 15 29 H 0.13 4.16 8.06 -2.91 -0.02 4.14 15 Total: -1.00 -64.20 276.77 5.67 -58.53 By element: Atomic # 1 Polarization: 1.89 SS G_CDS: 1.16 Total: 3.04 kcal Atomic # 6 Polarization: -48.17 SS G_CDS: 2.38 Total: -45.79 kcal Atomic # 7 Polarization: -56.73 SS G_CDS: 0.28 Total: -56.45 kcal Atomic # 8 Polarization: -5.76 SS G_CDS: -0.10 Total: -5.86 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 17 Polarization: 0.89 SS G_CDS: -0.08 Total: 0.81 kcal Total: -64.20 5.67 -58.53 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259782670.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.487 kcal (2) G-P(sol) polarization free energy of solvation -64.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds