Wall clock time and date at job start Mon Mar 30 2020 05:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31076 * 1 3 3 Si 1.86802 * 119.99783 * 2 1 4 4 H 1.48501 * 109.46981 * 240.00081 * 3 2 1 5 5 H 1.48505 * 109.47311 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47065 * 119.99841 * 3 2 1 7 7 C 1.39631 * 120.00135 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99889 * 179.97438 * 7 2 1 9 9 C 1.41020 * 120.00184 * 0.02562 * 7 2 1 10 10 C 1.37966 * 122.82752 * 180.02562 * 9 7 2 11 11 S 1.76168 * 108.04153 * 179.79453 * 10 9 7 12 12 C 1.75972 * 90.34926 * 0.28535 * 11 10 9 13 13 N 1.38002 * 124.93519 * 179.97438 * 12 11 10 14 14 C 1.46505 * 120.00135 * 359.69673 * 13 12 11 15 15 C 1.50695 * 109.47371 * 180.02562 * 14 13 12 16 16 C 1.34512 * 125.79226 * 89.99680 * 15 14 13 17 17 C 1.41379 * 106.84086 * 179.97438 * 16 15 14 18 18 C 1.34512 * 106.84332 * 0.02562 * 17 16 15 19 19 O 1.34301 * 108.41872 * 359.97438 * 18 17 16 20 20 N 1.29461 * 110.13141 * 359.70381 * 12 11 10 21 21 H 0.97001 * 120.00606 * 0.02562 * 1 2 3 22 22 H 1.08007 * 125.98088 * 359.97438 * 10 9 7 23 23 H 0.97003 * 120.00269 * 179.69184 * 13 12 11 24 24 H 1.09004 * 109.46953 * 59.99576 * 14 13 12 25 25 H 1.09001 * 109.47000 * 300.00210 * 14 13 12 26 26 H 1.07996 * 126.57559 * 359.94625 * 16 15 14 27 27 H 1.08007 * 126.57622 * 179.97438 * 17 16 15 28 28 H 1.08004 * 125.79431 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3108 0.0000 0.0000 3 14 2.2447 1.6178 0.0000 4 1 3.0984 1.6965 -1.2125 5 1 1.2797 2.7465 -0.0006 6 1 3.0984 1.6965 1.2125 7 6 2.0089 -1.2092 0.0005 8 1 3.0889 -1.2092 0.0001 9 6 1.3039 -2.4305 0.0005 10 6 1.9340 -3.6579 0.0016 11 16 0.6931 -4.9083 0.0072 12 6 -0.5635 -3.6764 -0.0011 13 7 -1.9198 -3.9310 -0.0017 14 6 -2.4057 -5.3131 -0.0018 15 6 -3.9127 -5.3159 -0.0032 16 6 -4.6984 -5.3175 -1.0949 17 6 -6.0359 -5.3204 -0.6370 18 6 -5.9876 -5.3199 0.7073 19 8 -4.6990 -5.3173 1.0856 20 7 -0.0307 -2.4965 -0.0008 21 1 -0.4851 0.8400 -0.0004 22 1 3.0014 -3.8232 0.0021 23 1 -2.5515 -3.1949 -0.0020 24 1 -2.0418 -5.8262 0.8883 25 1 -2.0410 -5.8264 -0.8916 26 1 -4.3704 -5.3162 -2.1239 27 1 -6.9258 -5.3219 -1.2491 28 1 -6.8404 -5.3220 1.3700 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259783499.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:35 Heat of formation + Delta-G solvation = 44.250003 kcal Electronic energy + Delta-G solvation = -15014.789026 eV Core-core repulsion = 12351.658612 eV Total energy + Delta-G solvation = -2663.130414 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.54598 -39.59554 -37.10882 -34.92114 -33.93552 -31.82709 -29.96383 -27.33974 -26.54941 -23.71578 -22.71251 -21.80425 -21.05540 -19.59050 -18.27580 -17.83884 -16.93270 -16.83644 -16.43801 -15.88653 -15.64405 -14.98916 -14.83509 -14.19048 -13.77266 -13.56015 -13.48447 -13.31758 -13.10170 -12.83280 -12.56275 -12.23432 -11.50264 -11.38796 -10.90433 -10.65451 -9.81255 -9.56913 -9.52930 -8.46045 -8.40206 -6.36896 0.56245 0.67081 0.82118 1.39650 1.47263 1.52658 1.61561 1.78119 1.98057 2.26319 2.48039 2.57492 3.56777 3.60702 4.09178 4.10911 4.28530 4.36405 4.67912 4.86808 4.99274 5.11755 5.23900 5.31875 5.56115 5.60802 5.90240 6.15474 6.15897 6.51265 6.67532 6.95767 7.87396 8.47281 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.029380 B = 0.005391 C = 0.004699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.791920 B = 5192.365566 C = 5957.298797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.027 3.973 3 Si 0.992 3.008 4 H -0.259 1.259 5 H -0.268 1.268 6 H -0.260 1.260 7 C -0.472 4.472 8 H 0.085 0.915 9 C 0.241 3.759 10 C -0.500 4.500 11 S -0.036 6.036 12 C 0.335 3.665 13 N -0.698 5.698 14 C 0.215 3.785 15 C -0.053 4.053 16 C -0.183 4.183 17 C -0.228 4.228 18 C -0.027 4.027 19 O -0.191 6.191 20 N -0.521 5.521 21 H 0.278 0.722 22 H 0.137 0.863 23 H 0.406 0.594 24 H 0.079 0.921 25 H 0.104 0.896 26 H 0.160 0.840 27 H 0.175 0.825 28 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.164 -7.771 -0.575 14.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C -0.192 4.192 3 Si 0.812 3.188 4 H -0.183 1.183 5 H -0.192 1.192 6 H -0.184 1.184 7 C -0.506 4.506 8 H 0.104 0.896 9 C 0.120 3.880 10 C -0.638 4.638 11 S 0.203 5.797 12 C -0.040 4.040 13 N -0.341 5.341 14 C 0.092 3.908 15 C -0.102 4.102 16 C -0.203 4.203 17 C -0.247 4.247 18 C -0.094 4.094 19 O -0.087 6.087 20 N -0.247 5.247 21 H 0.088 0.912 22 H 0.154 0.846 23 H 0.243 0.757 24 H 0.097 0.903 25 H 0.122 0.878 26 H 0.178 0.822 27 H 0.192 0.808 28 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -12.570 -8.440 -0.271 15.143 hybrid contribution 0.622 1.640 -0.168 1.762 sum -11.947 -6.800 -0.439 13.754 Atomic orbital electron populations 1.70254 1.08602 1.29106 1.32544 1.26940 0.95848 1.04515 0.91897 0.85131 0.78485 0.75203 0.80023 1.18316 1.19211 1.18380 1.19268 0.94457 0.89611 1.47221 0.89647 1.18000 0.85357 0.93758 0.90922 1.25661 0.99600 0.92179 1.46368 1.83153 1.00650 1.13283 1.82647 1.24689 0.90483 0.91095 0.97774 1.43698 1.00066 1.07922 1.82420 1.19631 0.84853 0.82190 1.04090 1.22019 0.92594 1.10573 0.85053 1.22016 0.93497 1.04994 0.99830 1.22220 0.98261 1.08866 0.95339 1.24966 0.84093 1.03299 0.97086 1.84040 1.17996 1.71335 1.35367 1.67017 1.12401 1.19918 1.25343 0.91179 0.84568 0.75679 0.90328 0.87787 0.82213 0.80753 0.74218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -43.83 11.68 21.78 0.25 -43.58 15 2 C 0.03 1.46 5.49 85.14 0.47 1.93 15 3 Si 0.99 40.13 29.56 68.60 2.03 42.16 15 4 H -0.26 -10.11 7.11 99.48 0.71 -9.40 15 5 H -0.27 -10.21 7.11 99.48 0.71 -9.50 15 6 H -0.26 -10.16 7.11 99.48 0.71 -9.45 15 7 C -0.47 -27.39 9.22 23.29 0.21 -27.18 15 8 H 0.09 4.70 7.84 -2.91 -0.02 4.68 15 9 C 0.24 14.26 6.48 39.49 0.26 14.51 15 10 C -0.50 -27.07 11.27 67.76 0.76 -26.30 15 11 S -0.04 -1.61 22.56 -56.49 -1.27 -2.88 15 12 C 0.34 16.04 8.38 179.59 1.50 17.55 15 13 N -0.70 -26.57 5.68 -351.13 -1.99 -28.57 15 14 C 0.22 6.26 6.09 85.63 0.52 6.78 15 15 C -0.05 -1.38 6.69 24.83 0.17 -1.22 15 16 C -0.18 -4.18 10.81 22.19 0.24 -3.94 15 17 C -0.23 -4.21 10.91 22.19 0.24 -3.97 15 18 C -0.03 -0.49 12.09 66.97 0.81 0.32 15 19 O -0.19 -4.89 10.65 -2.47 -0.03 -4.92 15 20 N -0.52 -29.74 8.40 -191.03 -1.61 -31.35 15 21 H 0.28 14.14 8.30 -92.71 -0.77 13.37 15 22 H 0.14 7.11 8.06 -2.91 -0.02 7.08 15 23 H 0.41 15.61 8.59 -92.71 -0.80 14.81 15 24 H 0.08 2.25 8.14 -2.39 -0.02 2.23 15 25 H 0.10 2.74 8.14 -2.39 -0.02 2.72 15 26 H 0.16 3.23 8.06 -2.91 -0.02 3.21 15 27 H 0.18 2.20 8.06 -2.91 -0.02 2.18 15 28 H 0.24 2.09 8.06 -2.91 -0.02 2.06 15 Total: -1.00 -69.62 270.53 2.97 -66.65 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: 0.40 Total: 23.99 kcal Atomic # 6 Polarization: -26.69 SS G_CDS: 5.19 Total: -21.51 kcal Atomic # 7 Polarization: -100.15 SS G_CDS: -3.35 Total: -103.49 kcal Atomic # 8 Polarization: -4.89 SS G_CDS: -0.03 Total: -4.92 kcal Atomic # 14 Polarization: 40.13 SS G_CDS: 2.03 Total: 42.16 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -1.27 Total: -2.88 kcal Total: -69.62 2.97 -66.65 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259783499.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.901 kcal (2) G-P(sol) polarization free energy of solvation -69.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds