Wall clock time and date at job start Mon Mar 30 2020 05:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.34216 * 126.23982 * 2 1 4 4 C 1.30308 * 108.89831 * 179.97438 * 3 2 1 5 5 C 1.50698 * 125.48709 * 180.02562 * 4 3 2 6 6 C 1.50695 * 109.47609 * 89.97262 * 5 4 3 7 7 H 1.08007 * 119.99459 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00529 * 180.02562 * 6 5 4 9 9 N 1.31509 * 119.99905 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00093 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.47497 * 90.00152 * 10 8 6 12 12 H 1.48505 * 109.47094 * 209.99853 * 10 8 6 13 13 H 1.48499 * 109.47437 * 329.99739 * 10 8 6 14 14 O 1.34099 * 109.02979 * 0.02562 * 4 3 2 15 15 C 1.35091 * 107.71167 * 359.97438 * 14 4 3 16 16 C 1.47866 * 126.57867 * 180.26133 * 15 14 4 17 17 C 1.35038 * 122.99960 * 359.42120 * 16 15 14 18 18 S 1.76177 * 107.86983 * 179.91206 * 17 16 15 19 19 C 1.70906 * 90.45889 * 0.29316 * 18 17 16 20 20 N 1.28779 * 110.54570 * 359.82807 * 19 18 17 21 21 H 1.09001 * 109.47452 * 269.99327 * 1 2 3 22 22 H 1.09002 * 109.47028 * 29.99961 * 1 2 3 23 23 H 1.09007 * 109.46987 * 149.99545 * 1 2 3 24 24 H 1.09001 * 109.47672 * 209.98230 * 5 4 3 25 25 H 1.09007 * 109.47099 * 329.97487 * 5 4 3 26 26 H 0.97006 * 120.00345 * 180.02562 * 9 8 6 27 27 H 1.08001 * 126.06497 * 359.97438 * 17 16 15 28 28 H 1.08005 * 124.72384 * 179.84867 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3004 1.0825 0.0000 4 6 3.5443 0.6941 0.0006 5 6 4.7451 1.6046 0.0013 6 6 5.1443 1.9085 1.4223 7 1 4.5846 1.4843 2.2428 8 6 6.2239 2.7280 1.6749 9 7 6.9050 3.2449 0.6757 10 14 6.7191 3.1040 3.4363 11 1 7.6969 2.0885 3.9033 12 1 7.3379 4.4526 3.4994 13 1 5.5164 3.0701 4.3067 14 8 3.5838 -0.6463 0.0004 15 6 2.3096 -1.0950 0.0002 16 6 1.8728 -2.5077 0.0054 17 6 2.7376 -3.5449 -0.0004 18 16 1.7960 -5.0338 0.0116 19 6 0.3442 -4.1320 0.0143 20 7 0.5967 -2.8692 0.0105 21 1 -0.3634 -0.0001 1.0277 22 1 -0.3633 0.8900 -0.5138 23 1 -0.3633 -0.8900 -0.5139 24 1 5.5727 1.1150 -0.5119 25 1 4.4972 2.5333 -0.5129 26 1 7.6649 3.8212 0.8534 27 1 3.8152 -3.4741 -0.0096 28 1 -0.6468 -4.5614 0.0190 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259799122.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:04 Heat of formation + Delta-G solvation = 59.986255 kcal Electronic energy + Delta-G solvation = -15209.293538 eV Core-core repulsion = 12546.845499 eV Total energy + Delta-G solvation = -2662.448039 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.60008 -39.64398 -34.52481 -33.64156 -31.95493 -30.30471 -28.82824 -26.59945 -25.16800 -23.55498 -21.05520 -20.67374 -19.58725 -18.28696 -16.78080 -16.30011 -15.80030 -15.29573 -14.61780 -14.40325 -14.26740 -13.36759 -13.11379 -12.84113 -12.48625 -12.31051 -12.08534 -11.74347 -11.36544 -10.94248 -10.78928 -10.33779 -10.09168 -9.89200 -9.82461 -9.67865 -9.60191 -9.41886 -8.57845 -7.58098 -6.20078 -4.25379 0.47453 1.21414 1.55319 1.75085 2.98618 3.05420 3.25893 3.31787 3.36876 3.48756 4.31882 4.37895 4.85054 5.06145 5.11896 5.17618 5.27929 5.44387 5.79283 6.00068 6.07679 6.21331 6.52819 6.58713 6.96573 7.22674 7.23807 7.51461 7.73926 7.99713 8.54555 8.75196 9.38784 10.89936 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.032269 B = 0.005105 C = 0.004751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.489470 B = 5483.950521 C = 5891.795795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.048 3.952 3 N -0.508 5.508 4 C 0.274 3.726 5 C 0.102 3.898 6 C -0.521 4.521 7 H 0.061 0.939 8 C 0.064 3.936 9 N -0.890 5.890 10 Si 0.905 3.095 11 H -0.278 1.278 12 H -0.283 1.283 13 H -0.272 1.272 14 O -0.198 6.198 15 C -0.051 4.051 16 C 0.164 3.836 17 C -0.245 4.245 18 S 0.123 5.877 19 C 0.026 3.974 20 N -0.453 5.453 21 H 0.070 0.930 22 H 0.068 0.932 23 H 0.086 0.914 24 H 0.052 0.948 25 H 0.069 0.931 26 H 0.267 0.733 27 H 0.183 0.817 28 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.628 -15.448 -2.132 18.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.075 4.075 3 N -0.237 5.237 4 C 0.069 3.931 5 C 0.065 3.935 6 C -0.560 4.560 7 H 0.079 0.921 8 C -0.139 4.139 9 N -0.528 5.528 10 Si 0.732 3.268 11 H -0.204 1.204 12 H -0.208 1.208 13 H -0.196 1.196 14 O -0.086 6.086 15 C -0.106 4.106 16 C 0.035 3.965 17 C -0.384 4.384 18 S 0.375 5.625 19 C -0.273 4.273 20 N -0.168 5.168 21 H 0.088 0.912 22 H 0.087 0.913 23 H 0.105 0.895 24 H 0.070 0.930 25 H 0.087 0.913 26 H 0.076 0.924 27 H 0.200 0.800 28 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -10.856 -15.431 -2.179 18.992 hybrid contribution 0.855 0.361 0.970 1.343 sum -10.001 -15.070 -1.209 18.126 Atomic orbital electron populations 1.20175 0.86625 1.03145 1.02600 1.21910 0.97775 0.87355 1.00502 1.70470 1.00909 1.30206 1.22107 1.27964 0.96508 0.77575 0.91063 1.18164 0.84595 0.90868 0.99888 1.20847 1.14003 1.30753 0.90353 0.92103 1.24936 0.95734 0.95168 0.98014 1.69928 1.19609 1.32263 1.30971 0.86367 0.78815 0.77753 0.83830 1.20381 1.20844 1.19646 1.84463 1.27987 1.25382 1.70762 1.19444 0.82453 0.91550 1.17183 1.17056 0.86922 0.89871 1.02687 1.27141 1.05368 0.93664 1.12251 1.83917 0.99763 1.10886 1.67893 1.28296 1.03849 0.91084 1.04101 1.65970 1.19051 1.16236 1.15504 0.91170 0.91334 0.89490 0.93035 0.91278 0.92353 0.79986 0.77900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.10 9.90 36.00 0.36 -0.74 15 2 C 0.05 0.99 7.15 -82.44 -0.59 0.40 15 3 N -0.51 -12.03 11.27 -7.06 -0.08 -12.11 15 4 C 0.27 6.63 7.52 -12.93 -0.10 6.53 15 5 C 0.10 2.66 5.60 -29.04 -0.16 2.50 15 6 C -0.52 -14.63 9.09 -34.44 -0.31 -14.95 15 7 H 0.06 1.73 7.74 -52.48 -0.41 1.32 15 8 C 0.06 1.79 5.46 -17.82 -0.10 1.69 15 9 N -0.89 -25.46 13.29 55.43 0.74 -24.72 15 10 Si 0.91 21.35 29.54 -169.99 -5.02 16.32 15 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 15 12 H -0.28 -6.54 7.11 56.52 0.40 -6.13 15 13 H -0.27 -6.40 7.11 56.52 0.40 -6.00 15 14 O -0.20 -4.46 10.75 4.04 0.04 -4.42 15 15 C -0.05 -1.04 7.14 -36.53 -0.26 -1.30 15 16 C 0.16 2.70 6.69 -84.72 -0.57 2.13 15 17 C -0.25 -3.37 11.17 29.59 0.33 -3.04 15 18 S 0.12 1.17 23.21 -107.50 -2.49 -1.33 15 19 C 0.03 0.26 12.19 51.48 0.63 0.88 15 20 N -0.45 -6.39 8.27 -12.35 -0.10 -6.50 15 21 H 0.07 1.06 8.14 -51.93 -0.42 0.64 15 22 H 0.07 1.03 8.14 -51.93 -0.42 0.61 15 23 H 0.09 1.28 6.41 -51.92 -0.33 0.95 15 24 H 0.05 1.34 8.14 -51.93 -0.42 0.92 15 25 H 0.07 1.85 8.14 -51.92 -0.42 1.43 15 26 H 0.27 7.17 8.31 -40.82 -0.34 6.83 15 27 H 0.18 2.39 8.06 -52.49 -0.42 1.97 15 28 H 0.20 1.14 8.06 -52.48 -0.42 0.72 15 LS Contribution 270.71 15.07 4.08 4.08 Total: -1.00 -31.30 270.71 -6.02 -37.32 By element: Atomic # 1 Polarization: -0.36 SS G_CDS: -2.41 Total: -2.77 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: -0.77 Total: -5.88 kcal Atomic # 7 Polarization: -43.88 SS G_CDS: 0.55 Total: -43.33 kcal Atomic # 8 Polarization: -4.46 SS G_CDS: 0.04 Total: -4.42 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: 1.17 SS G_CDS: -2.49 Total: -1.33 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -31.30 -6.02 -37.32 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259799122.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.310 kcal (2) G-P(sol) polarization free energy of solvation -31.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds