Wall clock time and date at job start Mon Mar 30 2020 05:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.34216 * 126.23982 * 2 1 4 4 C 1.30308 * 108.89831 * 179.97438 * 3 2 1 5 5 C 1.50698 * 125.48709 * 180.02562 * 4 3 2 6 6 C 1.50695 * 109.47609 * 89.97262 * 5 4 3 7 7 H 1.08007 * 119.99459 * 0.02562 * 6 5 4 8 8 C 1.37873 * 120.00529 * 180.02562 * 6 5 4 9 9 N 1.31509 * 119.99905 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00093 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.47497 * 90.00152 * 10 8 6 12 12 H 1.48505 * 109.47094 * 209.99853 * 10 8 6 13 13 H 1.48499 * 109.47437 * 329.99739 * 10 8 6 14 14 O 1.34099 * 109.02979 * 0.02562 * 4 3 2 15 15 C 1.35091 * 107.71167 * 359.97438 * 14 4 3 16 16 C 1.47866 * 126.57867 * 180.26133 * 15 14 4 17 17 C 1.35038 * 122.99960 * 359.42120 * 16 15 14 18 18 S 1.76177 * 107.86983 * 179.91206 * 17 16 15 19 19 C 1.70906 * 90.45889 * 0.29316 * 18 17 16 20 20 N 1.28779 * 110.54570 * 359.82807 * 19 18 17 21 21 H 1.09001 * 109.47452 * 269.99327 * 1 2 3 22 22 H 1.09002 * 109.47028 * 29.99961 * 1 2 3 23 23 H 1.09007 * 109.46987 * 149.99545 * 1 2 3 24 24 H 1.09001 * 109.47672 * 209.98230 * 5 4 3 25 25 H 1.09007 * 109.47099 * 329.97487 * 5 4 3 26 26 H 0.97006 * 120.00345 * 180.02562 * 9 8 6 27 27 H 1.08001 * 126.06497 * 359.97438 * 17 16 15 28 28 H 1.08005 * 124.72384 * 179.84867 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3004 1.0825 0.0000 4 6 3.5443 0.6941 0.0006 5 6 4.7451 1.6046 0.0013 6 6 5.1443 1.9085 1.4223 7 1 4.5846 1.4843 2.2428 8 6 6.2239 2.7280 1.6749 9 7 6.9050 3.2449 0.6757 10 14 6.7191 3.1040 3.4363 11 1 7.6969 2.0885 3.9033 12 1 7.3379 4.4526 3.4994 13 1 5.5164 3.0701 4.3067 14 8 3.5838 -0.6463 0.0004 15 6 2.3096 -1.0950 0.0002 16 6 1.8728 -2.5077 0.0054 17 6 2.7376 -3.5449 -0.0004 18 16 1.7960 -5.0338 0.0116 19 6 0.3442 -4.1320 0.0143 20 7 0.5967 -2.8692 0.0105 21 1 -0.3634 -0.0001 1.0277 22 1 -0.3633 0.8900 -0.5138 23 1 -0.3633 -0.8900 -0.5139 24 1 5.5727 1.1150 -0.5119 25 1 4.4972 2.5333 -0.5129 26 1 7.6649 3.8212 0.8534 27 1 3.8152 -3.4741 -0.0096 28 1 -0.6468 -4.5614 0.0190 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259799122.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:04 Heat of formation + Delta-G solvation = 37.585732 kcal Electronic energy + Delta-G solvation = -15210.264897 eV Core-core repulsion = 12546.845499 eV Total energy + Delta-G solvation = -2663.419398 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -44.28462 -40.66490 -36.20918 -35.67194 -33.56441 -31.63661 -30.56399 -27.96686 -26.54663 -25.27000 -22.63076 -22.29886 -20.88957 -19.35633 -18.84446 -17.63909 -17.56005 -16.85882 -16.20888 -15.55226 -15.48002 -14.88797 -14.42074 -14.27968 -14.14220 -13.96668 -13.69454 -13.22972 -12.87644 -12.74299 -12.58721 -12.13584 -12.07505 -11.61315 -11.51717 -10.84920 -10.71098 -10.67912 -10.44882 -9.01767 -8.31930 -6.47289 -0.57642 0.30906 0.39347 0.65126 1.37913 1.40586 1.47410 1.53285 1.56683 2.03614 2.36544 3.00029 3.14144 3.39790 3.74359 3.91582 4.14888 4.34538 4.57628 4.71903 4.78549 4.86046 4.92897 5.03562 5.12838 5.17951 5.47805 5.56265 5.88374 6.54180 6.57031 6.83081 7.21152 8.77686 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.032269 B = 0.005105 C = 0.004751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.489470 B = 5483.950521 C = 5891.795795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.018 3.982 3 N -0.522 5.522 4 C 0.241 3.759 5 C 0.114 3.886 6 C -0.544 4.544 7 H 0.050 0.950 8 C 0.018 3.982 9 N -0.918 5.918 10 Si 0.974 3.026 11 H -0.266 1.266 12 H -0.271 1.271 13 H -0.272 1.272 14 O -0.207 6.207 15 C -0.042 4.042 16 C 0.129 3.871 17 C -0.262 4.262 18 S 0.218 5.782 19 C 0.034 3.966 20 N -0.482 5.482 21 H 0.079 0.921 22 H 0.074 0.926 23 H 0.103 0.897 24 H 0.041 0.959 25 H 0.051 0.949 26 H 0.273 0.727 27 H 0.179 0.821 28 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.983 -18.021 -1.248 21.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.105 4.105 3 N -0.252 5.252 4 C 0.036 3.964 5 C 0.076 3.924 6 C -0.582 4.582 7 H 0.068 0.932 8 C -0.182 4.182 9 N -0.556 5.556 10 Si 0.797 3.203 11 H -0.192 1.192 12 H -0.196 1.196 13 H -0.197 1.197 14 O -0.095 6.095 15 C -0.096 4.096 16 C -0.002 4.002 17 C -0.402 4.402 18 S 0.472 5.528 19 C -0.264 4.264 20 N -0.197 5.197 21 H 0.097 0.903 22 H 0.093 0.907 23 H 0.121 0.879 24 H 0.059 0.941 25 H 0.069 0.931 26 H 0.082 0.918 27 H 0.196 0.804 28 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -12.218 -18.040 -1.307 21.827 hybrid contribution 1.193 0.877 0.641 1.614 sum -11.025 -17.163 -0.665 20.410 Atomic orbital electron populations 1.20240 0.83570 1.04194 1.03462 1.22557 0.99611 0.86522 1.01764 1.70376 1.01084 1.31978 1.21773 1.27370 0.96287 0.78203 0.94572 1.17775 0.85165 0.90553 0.98860 1.21057 1.14670 1.31569 0.90952 0.93215 1.25814 0.95350 0.94556 1.02488 1.70018 1.19981 1.32521 1.33115 0.85323 0.78484 0.78181 0.78328 1.19156 1.19617 1.19656 1.84405 1.29687 1.24650 1.70743 1.20293 0.81207 0.93919 1.14218 1.16977 0.88728 0.88259 1.06191 1.27418 1.05877 0.96240 1.10669 1.83664 0.97193 1.06620 1.65284 1.29124 1.06234 0.90041 1.01049 1.65938 1.17809 1.18401 1.17541 0.90262 0.90737 0.87878 0.94119 0.93125 0.91774 0.80400 0.73359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.82 9.90 71.23 0.71 -1.11 15 2 C 0.02 0.75 7.15 41.62 0.30 1.05 15 3 N -0.52 -25.81 11.27 -290.94 -3.28 -29.09 15 4 C 0.24 12.34 7.52 88.33 0.66 13.01 15 5 C 0.11 6.32 5.60 29.10 0.16 6.48 15 6 C -0.54 -31.80 9.09 25.60 0.23 -31.57 15 7 H 0.05 2.94 7.74 -2.91 -0.02 2.92 15 8 C 0.02 1.03 5.46 84.65 0.46 1.49 15 9 N -0.92 -53.63 13.29 21.44 0.28 -53.34 15 10 Si 0.97 44.09 29.54 68.60 2.03 46.12 15 11 H -0.27 -11.53 7.11 99.48 0.71 -10.82 15 12 H -0.27 -11.71 7.11 99.48 0.71 -11.01 15 13 H -0.27 -12.23 7.11 99.48 0.71 -11.52 15 14 O -0.21 -9.80 10.75 -8.46 -0.09 -9.89 15 15 C -0.04 -1.73 7.14 24.25 0.17 -1.56 15 16 C 0.13 4.12 6.69 40.84 0.27 4.39 15 17 C -0.26 -6.80 11.17 67.08 0.75 -6.05 15 18 S 0.22 3.24 23.21 -56.49 -1.31 1.92 15 19 C 0.03 0.52 12.19 130.69 1.59 2.11 15 20 N -0.48 -12.42 8.27 -193.00 -1.60 -14.02 15 21 H 0.08 2.32 8.14 -2.39 -0.02 2.30 15 22 H 0.07 2.21 8.14 -2.39 -0.02 2.19 15 23 H 0.10 2.89 6.41 -2.38 -0.02 2.87 15 24 H 0.04 2.27 8.14 -2.39 -0.02 2.25 15 25 H 0.05 2.91 8.14 -2.38 -0.02 2.89 15 26 H 0.27 14.80 8.31 -92.70 -0.77 14.03 15 27 H 0.18 4.61 8.06 -2.91 -0.02 4.59 15 28 H 0.25 1.30 8.06 -2.91 -0.02 1.27 15 Total: -1.00 -70.62 270.71 2.53 -68.08 By element: Atomic # 1 Polarization: 0.77 SS G_CDS: 1.19 Total: 1.96 kcal Atomic # 6 Polarization: -17.07 SS G_CDS: 5.31 Total: -11.75 kcal Atomic # 7 Polarization: -91.86 SS G_CDS: -4.59 Total: -96.45 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: -0.09 Total: -9.89 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Atomic # 16 Polarization: 3.24 SS G_CDS: -1.31 Total: 1.92 kcal Total: -70.62 2.53 -68.08 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259799122.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.670 kcal (2) G-P(sol) polarization free energy of solvation -70.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds