Wall clock time and date at job start Mon Mar 30 2020 06:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.33396 * 126.27565 * 2 1 4 4 C 1.30914 * 109.86166 * 179.97438 * 3 2 1 5 5 C 1.50706 * 125.30680 * 180.02562 * 4 3 2 6 6 C 1.50698 * 109.47294 * 90.02545 * 5 4 3 7 7 H 1.08005 * 119.99819 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00046 * 180.02562 * 6 5 4 9 9 N 1.31518 * 119.99944 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99979 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47418 * 89.99710 * 10 8 6 12 12 H 1.48498 * 109.47091 * 209.99770 * 10 8 6 13 13 H 1.48498 * 109.46997 * 329.99580 * 10 8 6 14 14 N 1.35017 * 109.38188 * 0.26033 * 4 3 2 15 15 C 1.37121 * 133.10691 * 180.50023 * 14 4 3 16 16 C 1.34765 * 120.54284 * 179.59425 * 15 14 4 17 17 Cl 1.73595 * 119.70953 * 179.69827 * 16 15 14 18 18 C 1.40887 * 120.58874 * 359.67620 * 16 15 14 19 19 C 1.35869 * 119.76887 * 0.02562 * 18 16 15 20 20 C 1.38027 * 126.26965 * 179.97438 * 2 1 3 21 21 H 1.09002 * 109.46941 * 89.97591 * 1 2 3 22 22 H 1.08995 * 109.47044 * 209.97581 * 1 2 3 23 23 H 1.08997 * 109.46932 * 329.98116 * 1 2 3 24 24 H 1.09001 * 109.46953 * 210.01987 * 5 4 3 25 25 H 1.09000 * 109.47318 * 330.01585 * 5 4 3 26 26 H 0.96997 * 119.99752 * 180.02562 * 9 8 6 27 27 H 1.08007 * 119.72653 * 359.29481 * 15 14 4 28 28 H 1.08001 * 120.11645 * 180.02562 * 18 16 15 29 29 H 1.08007 * 120.39857 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2963 1.0754 0.0000 4 6 3.5521 0.7055 0.0006 5 6 4.7351 1.6391 0.0013 6 6 5.1292 1.9496 1.4223 7 1 4.5778 1.5147 2.2429 8 6 6.1929 2.7896 1.6749 9 7 6.8640 3.3196 0.6756 10 14 6.6809 3.1750 3.4363 11 1 7.6779 2.1784 3.9032 12 1 7.2737 4.5351 3.4994 13 1 5.4790 3.1181 4.3066 14 7 3.6220 -0.6429 -0.0049 15 6 4.6702 -1.5268 0.0020 16 6 4.4455 -2.8556 0.0018 17 17 5.7887 -3.9553 0.0026 18 6 3.1301 -3.3603 0.0015 19 6 2.0778 -2.5008 0.0008 20 6 2.3236 -1.1128 0.0005 21 1 -0.3633 0.0004 -1.0277 22 1 -0.3633 -0.8902 0.5134 23 1 -0.3633 0.8898 0.5141 24 1 5.5718 1.1657 -0.5125 25 1 4.4692 2.5630 -0.5123 26 1 7.6125 3.9102 0.8533 27 1 5.6843 -1.1551 0.0026 28 1 2.9588 -4.4266 0.0018 29 1 1.0652 -2.8766 0.0001 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259800596.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:15 Heat of formation + Delta-G solvation = 63.404952 kcal Electronic energy + Delta-G solvation = -15490.712032 eV Core-core repulsion = 12826.368532 eV Total energy + Delta-G solvation = -2664.343499 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.32335 -37.56270 -36.06875 -34.03062 -32.97161 -30.64594 -29.95513 -28.83359 -25.49415 -23.75755 -23.16493 -20.78392 -20.18240 -16.96275 -16.59260 -16.54875 -15.77859 -15.33339 -14.66223 -14.44361 -13.54910 -13.16842 -12.74590 -12.62548 -12.36137 -12.10735 -12.03632 -11.77900 -11.47514 -10.99489 -10.90117 -10.77533 -10.66416 -10.23460 -10.01647 -9.57776 -9.54153 -8.66110 -8.55464 -6.89062 -6.15665 -4.22129 1.00878 1.51457 1.97114 3.25008 3.27526 3.31992 3.37012 3.58653 3.65024 4.36581 4.69533 4.92585 4.95753 5.13095 5.19074 5.23009 5.59417 5.72353 5.88448 5.92194 6.09796 6.12194 6.14171 6.36235 6.83541 6.97201 7.23714 7.35730 7.67269 7.77395 8.10252 8.59505 8.79939 9.42676 10.92668 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.017319 B = 0.007908 C = 0.005919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.295718 B = 3539.683931 C = 4729.308827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.016 3.984 3 N -0.461 5.461 4 C 0.252 3.748 5 C 0.094 3.906 6 C -0.517 4.517 7 H 0.057 0.943 8 C 0.064 3.936 9 N -0.890 5.890 10 Si 0.900 3.100 11 H -0.279 1.279 12 H -0.283 1.283 13 H -0.272 1.272 14 N -0.370 5.370 15 C 0.095 3.905 16 C -0.070 4.070 17 Cl -0.056 7.056 18 C -0.139 4.139 19 C -0.050 4.050 20 C -0.047 4.047 21 H 0.066 0.934 22 H 0.064 0.936 23 H 0.071 0.929 24 H 0.036 0.964 25 H 0.058 0.942 26 H 0.265 0.735 27 H 0.173 0.827 28 H 0.137 0.863 29 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.820 -13.095 -2.180 14.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.119 4.119 3 N -0.176 5.176 4 C -0.004 4.004 5 C 0.056 3.944 6 C -0.556 4.556 7 H 0.075 0.925 8 C -0.139 4.139 9 N -0.529 5.529 10 Si 0.727 3.273 11 H -0.205 1.205 12 H -0.209 1.209 13 H -0.197 1.197 14 N -0.042 5.042 15 C -0.027 4.027 16 C -0.100 4.100 17 Cl -0.028 7.028 18 C -0.160 4.160 19 C -0.070 4.070 20 C -0.152 4.152 21 H 0.085 0.915 22 H 0.083 0.917 23 H 0.090 0.910 24 H 0.054 0.946 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.190 0.810 28 H 0.155 0.845 29 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -6.742 -12.159 -2.239 14.083 hybrid contribution 0.874 -0.720 0.987 1.503 sum -5.867 -12.880 -1.252 14.209 Atomic orbital electron populations 1.19960 0.87405 1.02467 1.01886 1.21024 0.96063 0.86999 1.07791 1.70080 0.99768 1.29112 1.18600 1.24740 0.96033 0.78856 1.00809 1.17958 0.85517 0.91892 0.99081 1.20908 1.14594 1.29357 0.90781 0.92452 1.24947 0.95935 0.95320 0.97654 1.69935 1.20533 1.31533 1.30858 0.86458 0.78788 0.77779 0.84293 1.20483 1.20897 1.19703 1.42810 1.05653 1.07688 1.48031 1.21397 0.93710 0.87917 0.99642 1.19925 0.89648 0.89555 1.10903 1.98356 1.45025 1.62092 1.97288 1.20667 0.89803 1.00379 1.05166 1.20277 0.99447 0.89056 0.98189 1.19288 0.84731 0.94726 1.16479 0.91528 0.91666 0.90968 0.94566 0.92397 0.92502 0.80959 0.84541 0.83777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.81 10.44 36.01 0.38 -0.43 15 2 C 0.02 0.31 7.21 -81.99 -0.59 -0.28 15 3 N -0.46 -10.53 11.20 -6.39 -0.07 -10.60 15 4 C 0.25 5.87 7.15 -155.09 -1.11 4.76 15 5 C 0.09 2.41 5.42 -29.03 -0.16 2.26 15 6 C -0.52 -14.33 9.09 -34.44 -0.31 -14.65 15 7 H 0.06 1.62 7.74 -52.48 -0.41 1.22 15 8 C 0.06 1.77 5.46 -17.82 -0.10 1.67 15 9 N -0.89 -25.44 13.29 55.43 0.74 -24.70 15 10 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 15 11 H -0.28 -6.47 7.11 56.52 0.40 -6.06 15 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 15 13 H -0.27 -6.45 7.11 56.52 0.40 -6.05 15 14 N -0.37 -7.50 2.95 -58.12 -0.17 -7.67 15 15 C 0.10 1.70 10.54 -16.42 -0.17 1.52 15 16 C -0.07 -1.06 6.28 -39.81 -0.25 -1.31 15 17 Cl -0.06 -0.73 28.93 -51.86 -1.50 -2.23 15 18 C -0.14 -1.85 9.86 -39.43 -0.39 -2.24 15 19 C -0.05 -0.69 10.10 -39.40 -0.40 -1.09 15 20 C -0.05 -0.85 6.74 -84.09 -0.57 -1.42 15 21 H 0.07 0.80 8.14 -51.93 -0.42 0.37 15 22 H 0.06 0.71 8.14 -51.93 -0.42 0.29 15 23 H 0.07 0.98 8.14 -51.93 -0.42 0.56 15 24 H 0.04 0.92 8.04 -51.93 -0.42 0.51 15 25 H 0.06 1.58 8.14 -51.93 -0.42 1.16 15 26 H 0.27 7.15 8.31 -40.82 -0.34 6.81 15 27 H 0.17 3.01 7.98 -52.48 -0.42 2.59 15 28 H 0.14 1.40 8.06 -52.49 -0.42 0.98 15 29 H 0.14 1.47 8.06 -52.48 -0.42 1.05 15 LS Contribution 276.26 15.07 4.16 4.16 Total: -1.00 -30.32 276.26 -8.45 -38.77 By element: Atomic # 1 Polarization: 0.12 SS G_CDS: -2.91 Total: -2.80 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: -3.67 Total: -11.20 kcal Atomic # 7 Polarization: -43.47 SS G_CDS: 0.49 Total: -42.97 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -1.50 Total: -2.23 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -30.32 -8.45 -38.77 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259800596.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.176 kcal (2) G-P(sol) polarization free energy of solvation -30.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds