Wall clock time and date at job start Mon Mar 30 2020 06:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99797 * 2 1 4 4 H 1.48500 * 109.47056 * 270.00129 * 3 2 1 5 5 H 1.48504 * 109.47335 * 30.00204 * 3 2 1 6 6 H 1.48503 * 109.47000 * 150.00366 * 3 2 1 7 7 C 1.37881 * 120.00122 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99859 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99912 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47152 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47152 * 179.97438 * 10 9 7 12 12 C 1.35115 * 125.68892 * 125.01647 * 11 10 9 13 13 N 1.36816 * 107.17826 * 179.97438 * 12 11 10 14 14 C 1.36527 * 132.56173 * 179.97438 * 13 12 11 15 15 C 1.34939 * 120.63276 * 180.02562 * 14 13 12 16 16 C 1.40472 * 120.31375 * 359.97438 * 15 14 13 17 17 C 1.36122 * 119.67522 * 0.19096 * 16 15 14 18 18 Cl 1.73599 * 120.34047 * 179.72800 * 17 16 15 19 19 C 1.37050 * 107.00534 * 359.97438 * 13 12 11 20 20 N 1.32564 * 108.03846 * 359.97438 * 19 13 12 21 21 H 0.96995 * 119.99997 * 0.02562 * 1 2 3 22 22 H 1.08996 * 109.46853 * 60.00052 * 9 7 2 23 23 H 1.08998 * 109.47058 * 300.00219 * 9 7 2 24 24 H 1.09000 * 109.47225 * 59.99695 * 10 9 7 25 25 H 1.09008 * 109.46985 * 299.99832 * 10 9 7 26 26 H 1.08001 * 126.41337 * 359.96294 * 12 11 10 27 27 H 1.08000 * 119.68413 * 0.02562 * 14 13 12 28 28 H 1.08002 * 119.84453 * 179.97438 * 15 14 13 29 29 H 1.07994 * 120.15942 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4918 -4.9672 0.0001 12 6 1.6428 -5.9649 -0.8984 13 7 0.7788 -6.9640 -0.5418 14 6 0.5092 -8.1884 -1.0823 15 6 -0.4119 -8.9997 -0.5217 16 6 -1.1074 -8.5941 0.6294 17 6 -0.8510 -7.3745 1.1769 18 17 -1.7054 -6.8529 2.5952 19 6 0.1170 -6.5398 0.5809 20 7 0.5654 -5.3311 0.8897 21 1 -0.4850 0.8400 -0.0004 22 1 0.6242 -2.5567 -0.8903 23 1 0.6248 -2.5571 0.8896 24 1 2.8720 -3.6043 0.8894 25 1 2.8720 -3.6043 -0.8906 26 1 2.3187 -5.9724 -1.7407 27 1 1.0381 -8.5107 -1.9670 28 1 -0.6154 -9.9655 -0.9601 29 1 -1.8437 -9.2456 1.0762 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259805429.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:45 Heat of formation + Delta-G solvation = 50.062085 kcal Electronic energy + Delta-G solvation = -15080.919227 eV Core-core repulsion = 12415.997137 eV Total energy + Delta-G solvation = -2664.922090 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.79129 -38.73830 -37.59095 -35.78293 -34.36711 -33.43583 -30.67294 -29.76573 -27.25708 -24.50500 -23.81025 -23.26807 -21.18480 -18.82592 -18.54215 -17.87469 -17.02765 -16.80838 -16.44791 -16.05198 -15.19373 -14.85254 -14.57787 -14.09479 -13.68800 -13.61246 -13.21107 -12.99638 -12.83385 -12.68932 -12.40491 -12.05201 -11.86520 -11.61571 -11.43985 -11.25152 -10.88620 -10.53801 -9.58991 -8.82529 -8.17379 -6.30473 -0.35167 0.25868 0.89467 1.40191 1.43529 1.54577 1.78151 1.89729 2.40568 2.43570 3.12203 3.15104 3.54665 3.80924 3.92524 4.26654 4.34976 4.40947 4.73958 4.76839 4.87671 4.94421 5.02186 5.13358 5.44460 5.50767 5.61725 5.71466 5.87105 6.12956 6.23737 6.87640 6.94442 7.38877 8.95080 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.032736 B = 0.004965 C = 0.004466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.119369 B = 5637.626866 C = 6267.783360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.006 4.006 3 Si 0.972 3.028 4 H -0.268 1.268 5 H -0.285 1.285 6 H -0.260 1.260 7 C -0.542 4.542 8 H 0.070 0.930 9 C 0.043 3.957 10 C -0.025 4.025 11 C 0.044 3.956 12 C -0.085 4.085 13 N -0.363 5.363 14 C 0.060 3.940 15 C -0.135 4.135 16 C -0.066 4.066 17 C -0.044 4.044 18 Cl -0.049 7.049 19 C 0.195 3.805 20 N -0.527 5.527 21 H 0.262 0.738 22 H -0.019 1.019 23 H -0.019 1.019 24 H 0.062 0.938 25 H 0.091 0.909 26 H 0.225 0.775 27 H 0.212 0.788 28 H 0.211 0.789 29 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.345 -23.244 -3.759 23.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.203 4.203 3 Si 0.796 3.204 4 H -0.193 1.193 5 H -0.211 1.211 6 H -0.184 1.184 7 C -0.580 4.580 8 H 0.088 0.912 9 C 0.005 3.995 10 C -0.063 4.063 11 C -0.087 4.087 12 C -0.215 4.215 13 N -0.036 5.036 14 C -0.061 4.061 15 C -0.155 4.155 16 C -0.090 4.090 17 C -0.074 4.074 18 Cl -0.020 7.020 19 C -0.050 4.050 20 N -0.247 5.247 21 H 0.071 0.929 22 H -0.001 1.001 23 H 0.000 1.000 24 H 0.081 0.919 25 H 0.110 0.890 26 H 0.241 0.759 27 H 0.229 0.771 28 H 0.228 0.772 29 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -0.063 -22.585 -3.021 22.786 hybrid contribution 0.108 0.996 -0.147 1.013 sum 0.046 -21.588 -3.167 21.819 Atomic orbital electron populations 1.70166 1.08193 1.27697 1.51741 1.26112 0.95757 1.03793 0.94666 0.85343 0.78570 0.77812 0.78661 1.19296 1.21077 1.18360 1.21736 0.93828 0.91952 1.50490 0.91222 1.18767 0.93948 0.92630 0.94119 1.19980 0.96453 0.87703 1.02147 1.21421 0.96681 0.97509 0.93084 1.22917 1.03278 0.88754 1.06574 1.42991 1.26696 1.13900 1.20031 1.22724 1.00235 0.82136 1.00963 1.21357 0.95849 1.02539 0.95752 1.21554 0.99594 0.92352 0.95521 1.19879 0.97806 0.95558 0.94125 1.98373 1.74717 1.91408 1.37542 1.20765 1.00093 0.93352 0.90786 1.70624 1.14713 1.10075 1.29332 0.92907 1.00060 1.00038 0.91925 0.89043 0.75869 0.77142 0.77197 0.80038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.06 13.29 21.45 0.28 -60.78 15 2 C -0.01 -0.37 5.46 84.65 0.46 0.09 15 3 Si 0.97 46.08 29.54 68.60 2.03 48.10 15 4 H -0.27 -12.04 7.11 99.48 0.71 -11.33 15 5 H -0.29 -13.32 7.11 99.48 0.71 -12.61 15 6 H -0.26 -11.62 7.11 99.48 0.71 -10.91 15 7 C -0.54 -32.59 9.11 25.60 0.23 -32.36 15 8 H 0.07 3.89 7.74 -2.91 -0.02 3.87 15 9 C 0.04 2.51 4.94 29.85 0.15 2.66 15 10 C -0.02 -1.12 5.71 29.85 0.17 -0.95 15 11 C 0.04 1.86 6.33 41.59 0.26 2.12 15 12 C -0.09 -2.65 11.63 83.20 0.97 -1.68 15 13 N -0.36 -10.23 2.94 -352.08 -1.04 -11.27 15 14 C 0.06 0.93 10.95 83.20 0.91 1.84 15 15 C -0.13 -1.51 9.98 22.06 0.22 -1.29 15 16 C -0.07 -1.14 9.85 22.32 0.22 -0.92 15 17 C -0.04 -1.28 6.34 22.46 0.14 -1.14 15 18 Cl -0.05 -1.51 28.98 -2.72 -0.08 -1.59 15 19 C 0.19 7.06 7.63 134.14 1.02 8.09 15 20 N -0.53 -24.14 11.29 -182.35 -2.06 -26.20 15 21 H 0.26 15.95 8.31 -92.71 -0.77 15.18 15 22 H -0.02 -1.21 8.14 -2.39 -0.02 -1.23 15 23 H -0.02 -1.26 8.14 -2.39 -0.02 -1.28 15 24 H 0.06 2.85 8.14 -2.39 -0.02 2.83 15 25 H 0.09 3.59 8.10 -2.38 -0.02 3.57 15 26 H 0.22 4.75 8.06 -2.91 -0.02 4.73 15 27 H 0.21 1.22 8.06 -2.91 -0.02 1.20 15 28 H 0.21 0.12 8.06 -2.91 -0.02 0.10 15 29 H 0.18 1.84 8.06 -2.91 -0.02 1.82 15 Total: -1.00 -84.39 276.11 5.05 -79.34 By element: Atomic # 1 Polarization: -5.23 SS G_CDS: 1.16 Total: -4.07 kcal Atomic # 6 Polarization: -28.30 SS G_CDS: 4.76 Total: -23.54 kcal Atomic # 7 Polarization: -95.43 SS G_CDS: -2.81 Total: -98.24 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.10 kcal Atomic # 17 Polarization: -1.51 SS G_CDS: -0.08 Total: -1.59 kcal Total: -84.39 5.05 -79.34 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259805429.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.399 kcal (2) G-P(sol) polarization free energy of solvation -84.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds