Wall clock time and date at job start Mon Mar 30 2020 06:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47466 * 179.97438 * 10 9 7 12 12 C 1.40847 * 119.68522 * 89.99797 * 11 10 9 13 13 C 1.35882 * 119.78991 * 179.97438 * 12 11 10 14 14 C 1.40939 * 119.18081 * 359.97438 * 13 12 11 15 15 C 1.38067 * 133.73132 * 179.97438 * 14 13 12 16 16 Cl 1.73603 * 126.27651 * 359.97438 * 15 14 13 17 17 N 1.33408 * 107.44380 * 179.97438 * 15 14 13 18 18 C 1.30965 * 109.88547 * 0.02562 * 17 15 14 19 19 N 1.34976 * 109.38931 * 359.97438 * 18 17 15 20 20 C 1.34648 * 119.68874 * 269.72712 * 11 10 9 21 21 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 23 23 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 24 24 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 25 25 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 26 26 H 1.07999 * 120.10192 * 0.02562 * 12 11 10 27 27 H 1.07998 * 120.40781 * 179.97438 * 13 12 11 28 28 H 1.08002 * 125.30420 * 179.97438 * 18 17 15 29 29 H 1.08000 * 119.72342 * 359.97438 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4916 -4.9672 0.0012 12 6 1.1424 -5.5716 -1.2222 13 6 0.4634 -6.7486 -1.2241 14 6 0.1201 -7.3459 0.0055 15 6 -0.5480 -8.5039 0.3505 16 17 -1.2217 -9.6672 -0.7480 17 7 -0.5808 -8.5648 1.6828 18 6 0.0229 -7.5199 2.1915 19 7 0.4756 -6.7333 1.1924 20 6 1.1634 -5.5472 1.1712 21 1 -0.4850 0.8401 0.0004 22 1 0.6239 -2.5567 0.8903 23 1 0.6246 -2.5571 -0.8897 24 1 2.8718 -3.6044 -0.8895 25 1 2.8718 -3.6044 0.8904 26 1 1.4141 -5.1014 -2.1557 27 1 0.1903 -7.2206 -2.1563 28 1 0.1402 -7.3188 3.2462 29 1 1.4427 -5.0734 2.1006 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259812331.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:08 Heat of formation + Delta-G solvation = 63.175216 kcal Electronic energy + Delta-G solvation = -15037.194948 eV Core-core repulsion = 12372.841486 eV Total energy + Delta-G solvation = -2664.353462 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.73800 -37.89322 -36.52322 -34.06113 -33.16529 -32.16750 -29.31798 -27.83962 -25.38988 -23.37132 -22.38090 -21.73257 -20.45712 -17.89346 -16.78765 -16.44272 -15.90298 -15.47627 -14.77486 -14.58096 -14.03692 -13.96076 -13.00337 -12.83762 -12.44454 -12.04130 -11.66584 -11.56307 -11.35947 -11.03894 -11.01069 -10.68881 -10.34770 -10.26670 -10.04266 -9.86090 -9.28604 -8.82357 -8.47932 -7.36563 -6.12191 -4.16524 0.89881 1.32063 1.90132 2.78435 2.92541 3.24270 3.31402 3.33514 3.49728 4.35455 4.50422 4.76434 4.79476 4.86556 5.13232 5.15985 5.23903 5.75911 5.80790 5.98628 6.13635 6.26272 6.37498 6.52057 6.63645 6.80988 7.17430 7.50283 7.59454 7.69014 7.85156 8.24016 8.90137 9.48766 10.98642 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.048856 B = 0.004190 C = 0.004098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.971485 B = 6680.647153 C = 6831.659908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.527 4.527 8 H 0.057 0.943 9 C 0.029 3.971 10 C -0.073 4.073 11 C -0.062 4.062 12 C -0.094 4.094 13 C -0.088 4.088 14 C 0.029 3.971 15 C 0.035 3.965 16 Cl -0.011 7.011 17 N -0.448 5.448 18 C 0.146 3.854 19 N -0.351 5.351 20 C 0.028 3.972 21 H 0.262 0.738 22 H 0.018 0.982 23 H 0.019 0.981 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.142 0.858 27 H 0.146 0.854 28 H 0.217 0.783 29 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.653 -13.753 -0.099 13.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.565 4.565 8 H 0.076 0.924 9 C -0.008 4.008 10 C -0.111 4.111 11 C -0.065 4.065 12 C -0.115 4.115 13 C -0.108 4.108 14 C -0.084 4.084 15 C -0.126 4.126 16 Cl 0.017 6.983 17 N -0.164 5.164 18 C -0.129 4.129 19 N -0.021 5.021 20 C -0.091 4.091 21 H 0.072 0.928 22 H 0.036 0.964 23 H 0.038 0.962 24 H 0.089 0.911 25 H 0.084 0.916 26 H 0.160 0.840 27 H 0.164 0.836 28 H 0.233 0.767 29 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 1.087 -14.345 0.458 14.393 hybrid contribution 0.572 1.495 -0.446 1.662 sum 1.659 -12.849 0.012 12.956 Atomic orbital electron populations 1.69961 1.06104 1.26859 1.50193 1.25026 0.94851 0.99371 0.95084 0.86572 0.79815 0.83302 0.78200 1.20576 1.21172 1.19811 1.21192 0.93082 0.90749 1.51447 0.92427 1.19108 0.93567 0.90386 0.97746 1.20846 0.98308 0.89662 1.02293 1.20108 0.97829 0.97419 0.91148 1.21229 0.97217 0.94305 0.98727 1.20462 0.99246 0.96014 0.95033 1.18988 1.06081 0.95926 0.87368 1.20462 1.09074 0.93785 0.89307 1.98327 1.84079 1.57366 1.58556 1.69579 1.18185 1.21330 1.07256 1.24659 1.04291 0.88883 0.95077 1.42819 1.35343 1.16198 1.07705 1.21556 1.00215 0.86174 1.01142 0.92821 0.96401 0.96220 0.91124 0.91568 0.84041 0.83647 0.76692 0.81307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.79 13.29 55.43 0.74 -25.06 15 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 15 3 Si 0.89 20.67 29.54 -169.99 -5.02 15.65 15 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 15 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 15 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 15 7 C -0.53 -13.85 9.11 -34.44 -0.31 -14.17 15 8 H 0.06 1.46 7.74 -52.49 -0.41 1.05 15 9 C 0.03 0.68 4.95 -27.88 -0.14 0.54 15 10 C -0.07 -1.29 5.26 -27.89 -0.15 -1.44 15 11 C -0.06 -0.97 5.10 -104.91 -0.54 -1.51 15 12 C -0.09 -1.34 9.73 -39.44 -0.38 -1.72 15 13 C -0.09 -1.21 10.11 -39.40 -0.40 -1.61 15 14 C 0.03 0.44 6.80 -84.03 -0.57 -0.13 15 15 C 0.04 0.55 7.84 -16.93 -0.13 0.42 15 16 Cl -0.01 -0.15 29.32 -51.86 -1.52 -1.67 15 17 N -0.45 -7.07 11.20 -11.10 -0.12 -7.19 15 18 C 0.15 1.99 12.75 -90.05 -1.15 0.84 15 19 N -0.35 -5.18 2.95 -62.38 -0.18 -5.37 15 20 C 0.03 0.41 10.57 -16.45 -0.17 0.23 15 21 H 0.26 7.18 8.31 -40.82 -0.34 6.84 15 22 H 0.02 0.45 8.14 -51.93 -0.42 0.02 15 23 H 0.02 0.50 8.14 -51.93 -0.42 0.07 15 24 H 0.07 1.19 8.09 -51.93 -0.42 0.77 15 25 H 0.07 1.10 8.06 -51.93 -0.42 0.68 15 26 H 0.14 1.78 8.06 -52.49 -0.42 1.36 15 27 H 0.15 1.62 8.06 -52.49 -0.42 1.20 15 28 H 0.22 2.01 8.06 -52.49 -0.42 1.59 15 29 H 0.17 2.06 8.06 -52.49 -0.42 1.64 15 LS Contribution 276.01 15.07 4.16 4.16 Total: -1.00 -30.36 276.01 -8.91 -39.27 By element: Atomic # 1 Polarization: 0.16 SS G_CDS: -2.92 Total: -2.75 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: -4.04 Total: -17.04 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: 0.43 Total: -37.62 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 17 Polarization: -0.15 SS G_CDS: -1.52 Total: -1.67 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -30.36 -8.91 -39.27 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259812331.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.449 kcal (2) G-P(sol) polarization free energy of solvation -30.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds