Wall clock time and date at job start Mon Mar 30 2020 06:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47466 * 179.97438 * 10 9 7 12 12 C 1.40847 * 119.68522 * 89.99797 * 11 10 9 13 13 C 1.35882 * 119.78991 * 179.97438 * 12 11 10 14 14 C 1.40939 * 119.18081 * 359.97438 * 13 12 11 15 15 C 1.38067 * 133.73132 * 179.97438 * 14 13 12 16 16 Cl 1.73603 * 126.27651 * 359.97438 * 15 14 13 17 17 N 1.33408 * 107.44380 * 179.97438 * 15 14 13 18 18 C 1.30965 * 109.88547 * 0.02562 * 17 15 14 19 19 N 1.34976 * 109.38931 * 359.97438 * 18 17 15 20 20 C 1.34648 * 119.68874 * 269.72712 * 11 10 9 21 21 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 23 23 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 24 24 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 25 25 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 26 26 H 1.07999 * 120.10192 * 0.02562 * 12 11 10 27 27 H 1.07998 * 120.40781 * 179.97438 * 13 12 11 28 28 H 1.08002 * 125.30420 * 179.97438 * 18 17 15 29 29 H 1.08000 * 119.72342 * 359.97438 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4916 -4.9672 0.0012 12 6 1.1424 -5.5716 -1.2222 13 6 0.4634 -6.7486 -1.2241 14 6 0.1201 -7.3459 0.0055 15 6 -0.5480 -8.5039 0.3505 16 17 -1.2217 -9.6672 -0.7480 17 7 -0.5808 -8.5648 1.6828 18 6 0.0229 -7.5199 2.1915 19 7 0.4756 -6.7333 1.1924 20 6 1.1634 -5.5472 1.1712 21 1 -0.4850 0.8401 0.0004 22 1 0.6239 -2.5567 0.8903 23 1 0.6246 -2.5571 -0.8897 24 1 2.8718 -3.6044 -0.8895 25 1 2.8718 -3.6044 0.8904 26 1 1.4141 -5.1014 -2.1557 27 1 0.1903 -7.2206 -2.1563 28 1 0.1402 -7.3188 3.2462 29 1 1.4427 -5.0734 2.1006 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259812331.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:08 Heat of formation + Delta-G solvation = 48.431269 kcal Electronic energy + Delta-G solvation = -15037.834293 eV Core-core repulsion = 12372.841486 eV Total energy + Delta-G solvation = -2664.992807 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.84682 -39.06728 -37.60746 -35.76344 -34.30696 -33.81325 -30.82229 -29.02125 -27.03991 -24.62418 -23.78666 -22.87991 -21.91166 -19.01070 -18.52482 -17.80410 -17.05123 -16.64697 -16.49158 -15.85150 -15.24524 -14.99448 -14.64014 -14.45386 -13.80576 -13.55751 -13.05914 -12.89965 -12.68439 -12.50088 -12.37811 -12.36139 -11.74786 -11.59531 -11.43097 -11.37505 -11.21112 -10.54082 -10.10188 -8.47296 -8.18467 -6.29599 -0.20122 0.17757 0.80097 1.43383 1.43754 1.54445 1.69668 1.81588 2.35360 2.43995 3.15831 3.43218 3.65400 3.74608 3.84206 4.00981 4.08652 4.53883 4.63423 4.83185 4.85115 5.03807 5.13268 5.15263 5.31936 5.52180 5.56746 5.76055 5.85995 6.08682 6.23426 6.58071 6.88550 7.40431 8.92582 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.048856 B = 0.004190 C = 0.004098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.971485 B = 6680.647153 C = 6831.659908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.961 3.039 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.260 1.260 7 C -0.539 4.539 8 H 0.067 0.933 9 C 0.034 3.966 10 C -0.056 4.056 11 C -0.082 4.082 12 C -0.102 4.102 13 C -0.087 4.087 14 C 0.011 3.989 15 C 0.019 3.981 16 Cl 0.000 7.000 17 N -0.474 5.474 18 C 0.157 3.843 19 N -0.360 5.360 20 C 0.036 3.964 21 H 0.262 0.738 22 H -0.007 1.007 23 H -0.009 1.009 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.154 0.846 27 H 0.168 0.832 28 H 0.255 0.745 29 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.808 -13.927 0.270 14.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.786 3.214 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.184 1.184 7 C -0.577 4.577 8 H 0.085 0.915 9 C -0.003 4.003 10 C -0.094 4.094 11 C -0.084 4.084 12 C -0.123 4.123 13 C -0.106 4.106 14 C -0.101 4.101 15 C -0.141 4.141 16 Cl 0.028 6.972 17 N -0.190 5.190 18 C -0.118 4.118 19 N -0.030 5.030 20 C -0.083 4.083 21 H 0.071 0.929 22 H 0.011 0.989 23 H 0.010 0.990 24 H 0.097 0.903 25 H 0.097 0.903 26 H 0.172 0.828 27 H 0.185 0.815 28 H 0.271 0.729 29 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 2.256 -14.541 0.812 14.738 hybrid contribution 0.170 1.465 -0.522 1.564 sum 2.427 -13.077 0.289 13.303 Atomic orbital electron populations 1.70099 1.07846 1.27675 1.51818 1.25940 0.95634 1.03288 0.94919 0.85505 0.78799 0.78724 0.78378 1.20012 1.21308 1.18422 1.21711 0.93819 0.91987 1.50193 0.91457 1.18956 0.94046 0.92200 0.95134 1.20523 0.97054 0.88486 1.03325 1.19953 0.99083 0.97098 0.92293 1.21385 0.97456 0.94596 0.98900 1.20706 0.98642 0.95740 0.95532 1.19288 1.06460 0.96193 0.88185 1.20732 1.09389 0.94339 0.89674 1.98322 1.83882 1.56871 1.58093 1.69604 1.19364 1.22504 1.07521 1.25525 1.02237 0.87677 0.96388 1.42964 1.35704 1.16406 1.07932 1.21828 0.98960 0.85785 1.01714 0.92925 0.98877 0.99013 0.90337 0.90310 0.82809 0.81452 0.72908 0.79185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.83 13.29 21.45 0.28 -54.54 15 2 C 0.00 0.00 5.46 84.66 0.46 0.46 15 3 Si 0.96 42.09 29.54 68.60 2.03 44.12 15 4 H -0.27 -11.71 7.11 99.48 0.71 -11.00 15 5 H -0.29 -12.54 7.11 99.48 0.71 -11.83 15 6 H -0.26 -10.74 7.11 99.48 0.71 -10.04 15 7 C -0.54 -28.21 9.11 25.60 0.23 -27.98 15 8 H 0.07 3.31 7.74 -2.91 -0.02 3.29 15 9 C 0.03 1.60 4.95 29.85 0.15 1.75 15 10 C -0.06 -1.92 5.26 29.85 0.16 -1.76 15 11 C -0.08 -2.45 5.10 -20.05 -0.10 -2.56 15 12 C -0.10 -2.82 9.73 22.36 0.22 -2.60 15 13 C -0.09 -2.28 10.11 22.38 0.23 -2.06 15 14 C 0.01 0.32 6.80 38.76 0.26 0.58 15 15 C 0.02 0.57 7.84 84.41 0.66 1.24 15 16 Cl 0.00 0.01 29.32 -2.72 -0.08 -0.07 15 17 N -0.47 -14.29 11.20 -189.04 -2.12 -16.41 15 18 C 0.16 3.94 12.75 180.15 2.30 6.24 15 19 N -0.36 -10.03 2.95 -351.27 -1.04 -11.07 15 20 C 0.04 0.98 10.57 83.04 0.88 1.86 15 21 H 0.26 14.57 8.31 -92.71 -0.77 13.80 15 22 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 15 23 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 15 24 H 0.08 2.55 8.09 -2.39 -0.02 2.53 15 25 H 0.08 2.48 8.06 -2.39 -0.02 2.46 15 26 H 0.15 3.72 8.06 -2.91 -0.02 3.70 15 27 H 0.17 3.47 8.06 -2.91 -0.02 3.45 15 28 H 0.26 3.91 8.06 -2.91 -0.02 3.89 15 29 H 0.19 4.20 8.06 -2.91 -0.02 4.17 15 Total: -1.00 -64.93 276.01 5.68 -59.25 By element: Atomic # 1 Polarization: 2.39 SS G_CDS: 1.16 Total: 3.55 kcal Atomic # 6 Polarization: -30.27 SS G_CDS: 5.44 Total: -24.82 kcal Atomic # 7 Polarization: -79.15 SS G_CDS: -2.87 Total: -82.02 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Atomic # 17 Polarization: 0.01 SS G_CDS: -0.08 Total: -0.07 kcal Total: -64.93 5.68 -59.25 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259812331.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.680 kcal (2) G-P(sol) polarization free energy of solvation -64.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds