Wall clock time and date at job start Mon Mar 30 2020 05:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47030 * 2 1 4 4 C 1.50699 * 109.46627 * 119.99753 * 2 1 3 5 5 H 1.08008 * 119.99586 * 120.00542 * 4 2 1 6 6 C 1.37876 * 120.00188 * 299.99404 * 4 2 1 7 7 N 1.31513 * 120.00185 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99674 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47420 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.47019 * 120.00646 * 8 6 4 11 11 H 1.48503 * 109.46872 * 240.00004 * 8 6 4 12 12 C 1.50693 * 109.46646 * 239.99602 * 2 1 3 13 13 C 1.37849 * 120.01547 * 299.99781 * 12 2 1 14 14 C 1.38825 * 120.67811 * 180.02562 * 13 12 2 15 15 Cl 1.73599 * 119.87670 * 179.97438 * 14 13 12 16 16 C 1.37864 * 120.24750 * 359.97438 * 14 13 12 17 17 C 1.39382 * 119.59221 * 0.02562 * 16 14 13 18 18 C 1.46792 * 134.33435 * 179.97438 * 17 16 14 19 19 C 1.34000 * 106.18632 * 180.02562 * 18 17 16 20 20 O 1.34441 * 110.16252 * 0.26656 * 19 18 17 21 21 C 1.34864 * 110.89232 * 359.54370 * 20 19 18 22 22 H 1.09000 * 109.47394 * 300.00335 * 1 2 3 23 23 H 1.09001 * 109.47877 * 60.00071 * 1 2 3 24 24 H 1.09001 * 109.47349 * 180.02562 * 1 2 3 25 25 H 0.96997 * 120.00065 * 179.97438 * 7 6 4 26 26 H 1.07994 * 119.66232 * 359.97438 * 13 12 2 27 27 H 1.08005 * 120.20321 * 179.97438 * 16 14 13 28 28 H 1.07997 * 126.90931 * 0.02562 * 18 17 16 29 29 H 1.08002 * 124.91550 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2392 2.4827 7 7 0.9428 0.8299 2.6034 8 14 2.3224 -1.1195 4.0080 9 1 3.1481 -2.2856 3.6039 10 1 3.1471 -0.1857 4.8161 11 1 1.1676 -1.5864 4.8165 12 6 2.0322 -0.7105 -1.2304 13 6 1.6993 -2.0302 -1.4487 14 6 2.1548 -2.6983 -2.5772 15 17 1.7235 -4.3605 -2.8311 16 6 2.9484 -2.0465 -3.4970 17 6 3.2916 -0.7120 -3.2870 18 6 4.0928 0.2700 -4.0277 19 6 4.0538 1.4012 -3.3104 20 8 3.3172 1.2208 -2.2003 21 6 2.8311 -0.0359 -2.1446 22 1 -0.3634 0.5139 0.8899 23 1 -0.3635 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 0.7082 1.1611 3.4844 26 1 1.0786 -2.5501 -0.7341 27 1 3.3027 -2.5670 -4.3746 28 1 4.6097 0.1125 -4.9627 29 1 4.5470 2.3228 -3.5822 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259825807.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:32 Heat of formation + Delta-G solvation = 9.664624 kcal Electronic energy + Delta-G solvation = -15681.664402 eV Core-core repulsion = 12982.697796 eV Total energy + Delta-G solvation = -2698.966606 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.050 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.02573 -37.90613 -36.08040 -34.50670 -32.28130 -30.82426 -29.06570 -28.12602 -25.17992 -23.23414 -22.11577 -21.33075 -19.53873 -17.13610 -16.81758 -16.15989 -15.61563 -15.52886 -14.61786 -14.05123 -13.23257 -12.89377 -12.81434 -12.59995 -12.33379 -12.03397 -11.69692 -11.25630 -11.08201 -10.95057 -10.72585 -10.63909 -10.33747 -10.15668 -9.63814 -9.51150 -8.98142 -8.42112 -8.03267 -7.61112 -6.05230 -4.12778 1.32701 1.65285 2.44529 2.70907 3.24761 3.27950 3.36012 3.40790 4.07412 4.41218 4.76645 4.99620 5.26015 5.37916 5.48942 5.62899 5.81246 5.91248 6.28450 6.43803 6.56504 6.65418 6.70598 6.84704 6.99595 7.08540 7.19223 7.57222 7.65394 7.86250 8.02936 8.30227 8.89422 9.52238 11.00519 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.018443 B = 0.008329 C = 0.006459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.852828 B = 3360.966659 C = 4333.850146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.072 3.928 3 H 0.042 0.958 4 C -0.510 4.510 5 H 0.060 0.940 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.894 3.106 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.283 1.283 12 C -0.001 4.001 13 C -0.090 4.090 14 C -0.040 4.040 15 Cl -0.083 7.083 16 C -0.096 4.096 17 C -0.127 4.127 18 C -0.220 4.220 19 C 0.007 3.993 20 O -0.184 6.184 21 C 0.054 3.946 22 H 0.088 0.912 23 H 0.009 0.991 24 H 0.031 0.969 25 H 0.261 0.739 26 H 0.145 0.855 27 H 0.127 0.873 28 H 0.153 0.847 29 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.531 -2.573 -11.595 12.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.053 3.947 3 H 0.060 0.940 4 C -0.548 4.548 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.721 3.279 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.209 1.209 12 C -0.002 4.002 13 C -0.109 4.109 14 C -0.067 4.067 15 Cl -0.054 7.054 16 C -0.115 4.115 17 C -0.128 4.128 18 C -0.239 4.239 19 C -0.059 4.059 20 O -0.084 6.084 21 C 0.006 3.994 22 H 0.107 0.893 23 H 0.029 0.971 24 H 0.050 0.950 25 H 0.071 0.929 26 H 0.163 0.837 27 H 0.145 0.855 28 H 0.171 0.829 29 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 3.352 -2.414 -11.264 11.998 hybrid contribution 0.474 -0.627 0.594 0.985 sum 3.826 -3.041 -10.670 11.736 Atomic orbital electron populations 1.21811 0.97081 0.99557 1.00568 1.17911 0.93216 0.95752 0.87790 0.94039 1.21125 1.31543 1.12508 0.89654 0.92210 1.24945 0.94919 0.94936 0.98979 1.69891 1.36459 1.22781 1.23465 0.86502 0.78718 0.79760 0.82894 1.19639 1.20975 1.20894 1.19640 0.93065 0.92356 0.95124 1.20708 1.01068 0.93157 0.95922 1.20663 1.02560 0.85575 0.97887 1.98324 1.92378 1.18103 1.96623 1.20004 0.99651 0.92462 0.99413 1.19724 1.01975 0.94693 0.96392 1.22354 1.06102 0.92746 1.02702 1.23938 0.96070 1.00095 0.85775 1.84089 1.55422 1.29361 1.39561 1.19669 0.99837 0.82938 0.96916 0.89290 0.97148 0.94987 0.92886 0.83695 0.85478 0.82933 0.78018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.16 8.78 37.16 0.33 -2.83 15 2 C 0.07 1.80 2.48 -92.93 -0.23 1.56 15 3 H 0.04 1.14 7.79 -51.93 -0.40 0.73 15 4 C -0.51 -13.76 8.23 -34.44 -0.28 -14.05 15 5 H 0.06 1.61 7.60 -52.48 -0.40 1.21 15 6 C 0.06 1.74 5.30 -17.82 -0.09 1.64 15 7 N -0.89 -24.89 11.32 55.43 0.63 -24.26 15 8 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 15 9 H -0.27 -6.36 7.11 56.52 0.40 -5.95 15 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 15 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 12 C 0.00 -0.02 4.75 -104.53 -0.50 -0.52 15 13 C -0.09 -1.79 8.46 -39.51 -0.33 -2.13 15 14 C -0.04 -0.71 6.32 -39.50 -0.25 -0.96 15 15 Cl -0.08 -1.26 28.95 -51.86 -1.50 -2.76 15 16 C -0.10 -1.59 9.87 -39.29 -0.39 -1.98 15 17 C -0.13 -2.23 6.40 -105.16 -0.67 -2.90 15 18 C -0.22 -3.10 11.14 -37.62 -0.42 -3.52 15 19 C 0.01 0.10 11.96 29.24 0.35 0.45 15 20 O -0.18 -3.53 10.38 3.77 0.04 -3.50 15 21 C 0.05 1.10 7.05 -38.49 -0.27 0.83 15 22 H 0.09 2.32 6.07 -51.93 -0.32 2.00 15 23 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 15 24 H 0.03 0.71 7.38 -51.93 -0.38 0.33 15 25 H 0.26 6.96 8.31 -40.82 -0.34 6.62 15 26 H 0.15 2.89 7.54 -52.49 -0.40 2.50 15 27 H 0.13 1.75 8.06 -52.48 -0.42 1.33 15 28 H 0.15 1.61 8.06 -52.49 -0.42 1.19 15 29 H 0.20 1.79 8.06 -52.49 -0.42 1.37 15 LS Contribution 269.25 15.07 4.06 4.06 Total: -1.00 -28.90 269.25 -7.28 -36.18 By element: Atomic # 1 Polarization: 1.38 SS G_CDS: -2.72 Total: -1.34 kcal Atomic # 6 Polarization: -21.65 SS G_CDS: -2.76 Total: -24.41 kcal Atomic # 7 Polarization: -24.89 SS G_CDS: 0.63 Total: -24.26 kcal Atomic # 8 Polarization: -3.53 SS G_CDS: 0.04 Total: -3.50 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 17 Polarization: -1.26 SS G_CDS: -1.50 Total: -2.76 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -28.90 -7.28 -36.18 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259825807.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.847 kcal (2) G-P(sol) polarization free energy of solvation -28.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds