Wall clock time and date at job start Mon Mar 30 2020 05:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47030 * 2 1 4 4 C 1.50699 * 109.46627 * 119.99753 * 2 1 3 5 5 H 1.08008 * 119.99586 * 120.00542 * 4 2 1 6 6 C 1.37876 * 120.00188 * 299.99404 * 4 2 1 7 7 N 1.31513 * 120.00185 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99674 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47420 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.47019 * 120.00646 * 8 6 4 11 11 H 1.48503 * 109.46872 * 240.00004 * 8 6 4 12 12 C 1.50693 * 109.46646 * 239.99602 * 2 1 3 13 13 C 1.37849 * 120.01547 * 299.99781 * 12 2 1 14 14 C 1.38825 * 120.67811 * 180.02562 * 13 12 2 15 15 Cl 1.73599 * 119.87670 * 179.97438 * 14 13 12 16 16 C 1.37864 * 120.24750 * 359.97438 * 14 13 12 17 17 C 1.39382 * 119.59221 * 0.02562 * 16 14 13 18 18 C 1.46792 * 134.33435 * 179.97438 * 17 16 14 19 19 C 1.34000 * 106.18632 * 180.02562 * 18 17 16 20 20 O 1.34441 * 110.16252 * 0.26656 * 19 18 17 21 21 C 1.34864 * 110.89232 * 359.54370 * 20 19 18 22 22 H 1.09000 * 109.47394 * 300.00335 * 1 2 3 23 23 H 1.09001 * 109.47877 * 60.00071 * 1 2 3 24 24 H 1.09001 * 109.47349 * 180.02562 * 1 2 3 25 25 H 0.96997 * 120.00065 * 179.97438 * 7 6 4 26 26 H 1.07994 * 119.66232 * 359.97438 * 13 12 2 27 27 H 1.08005 * 120.20321 * 179.97438 * 16 14 13 28 28 H 1.07997 * 126.90931 * 0.02562 * 18 17 16 29 29 H 1.08002 * 124.91550 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2392 2.4827 7 7 0.9428 0.8299 2.6034 8 14 2.3224 -1.1195 4.0080 9 1 3.1481 -2.2856 3.6039 10 1 3.1471 -0.1857 4.8161 11 1 1.1676 -1.5864 4.8165 12 6 2.0322 -0.7105 -1.2304 13 6 1.6993 -2.0302 -1.4487 14 6 2.1548 -2.6983 -2.5772 15 17 1.7235 -4.3605 -2.8311 16 6 2.9484 -2.0465 -3.4970 17 6 3.2916 -0.7120 -3.2870 18 6 4.0928 0.2700 -4.0277 19 6 4.0538 1.4012 -3.3104 20 8 3.3172 1.2208 -2.2003 21 6 2.8311 -0.0359 -2.1446 22 1 -0.3634 0.5139 0.8899 23 1 -0.3635 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 0.7082 1.1611 3.4844 26 1 1.0786 -2.5501 -0.7341 27 1 3.3027 -2.5670 -4.3746 28 1 4.6097 0.1125 -4.9627 29 1 4.5470 2.3228 -3.5822 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259825807.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:31 Heat of formation + Delta-G solvation = -5.522765 kcal Electronic energy + Delta-G solvation = -15682.322976 eV Core-core repulsion = 12982.697796 eV Total energy + Delta-G solvation = -2699.625181 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.050 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.34530 -39.35468 -37.46014 -36.22692 -33.93622 -32.40278 -30.45221 -29.69713 -27.25612 -24.77649 -23.52314 -22.75969 -21.10912 -18.65566 -18.22804 -17.93311 -17.01260 -16.98530 -16.45348 -15.48385 -14.92253 -14.41173 -14.20267 -14.11963 -13.60314 -13.54728 -13.44316 -12.95548 -12.91405 -12.78864 -12.26177 -12.15263 -12.02948 -11.98172 -11.27067 -11.19792 -10.76752 -10.50878 -9.40563 -9.01166 -8.12528 -6.27601 -0.01470 0.22300 1.11193 1.39921 1.41771 1.50952 1.54390 2.01966 2.40730 2.65261 3.15224 3.54665 3.73891 4.08388 4.25294 4.36617 4.41164 4.67694 4.73135 4.86479 5.07669 5.09935 5.15875 5.22865 5.28085 5.53860 5.56424 5.63950 5.87966 5.99018 6.25007 6.28312 6.79890 7.40501 8.92415 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.018443 B = 0.008329 C = 0.006459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.852828 B = 3360.966659 C = 4333.850146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.075 3.925 3 H 0.003 0.997 4 C -0.524 4.524 5 H 0.053 0.947 6 C 0.017 3.983 7 N -0.915 5.915 8 Si 0.956 3.044 9 H -0.268 1.268 10 H -0.280 1.280 11 H -0.276 1.276 12 C -0.034 4.034 13 C -0.097 4.097 14 C -0.046 4.046 15 Cl -0.060 7.060 16 C -0.082 4.082 17 C -0.131 4.131 18 C -0.212 4.212 19 C 0.007 3.993 20 O -0.217 6.217 21 C 0.021 3.979 22 H 0.063 0.937 23 H 0.022 0.978 24 H 0.038 0.962 25 H 0.263 0.737 26 H 0.134 0.866 27 H 0.163 0.837 28 H 0.196 0.804 29 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.941 -3.482 -13.473 14.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.057 3.943 3 H 0.021 0.979 4 C -0.562 4.562 5 H 0.071 0.929 6 C -0.182 4.182 7 N -0.554 5.554 8 Si 0.781 3.219 9 H -0.193 1.193 10 H -0.206 1.206 11 H -0.201 1.201 12 C -0.035 4.035 13 C -0.116 4.116 14 C -0.072 4.072 15 Cl -0.031 7.031 16 C -0.100 4.100 17 C -0.132 4.132 18 C -0.231 4.231 19 C -0.057 4.057 20 O -0.119 6.119 21 C -0.026 4.026 22 H 0.082 0.918 23 H 0.041 0.959 24 H 0.057 0.943 25 H 0.072 0.928 26 H 0.152 0.848 27 H 0.181 0.819 28 H 0.213 0.787 29 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 4.762 -3.331 -13.155 14.381 hybrid contribution 0.077 -0.327 1.063 1.115 sum 4.839 -3.658 -12.092 13.528 Atomic orbital electron populations 1.21641 0.96768 0.99667 0.99819 1.17667 0.93551 0.93849 0.89252 0.97897 1.21371 1.31472 1.12415 0.90922 0.92899 1.25715 0.95104 0.95626 1.01788 1.70016 1.37353 1.23940 1.24130 0.85531 0.78319 0.78677 0.79333 1.19276 1.20622 1.20126 1.19359 0.95615 0.93462 0.95029 1.20603 1.01449 0.92640 0.96914 1.20659 1.02562 0.86712 0.97288 1.98328 1.92249 1.16126 1.96432 1.20407 0.97863 0.92057 0.99711 1.20189 1.01863 0.95432 0.95761 1.22825 1.05277 0.91202 1.03761 1.25005 0.94616 1.02175 0.83881 1.84071 1.56531 1.29180 1.42073 1.19808 1.00730 0.84036 0.98018 0.91798 0.95918 0.94304 0.92757 0.84769 0.81906 0.78667 0.73238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.05 8.78 71.98 0.63 -5.42 15 2 C 0.08 3.97 2.48 -12.29 -0.03 3.94 15 3 H 0.00 0.17 7.79 -2.39 -0.02 0.15 15 4 C -0.52 -29.34 8.23 25.60 0.21 -29.13 15 5 H 0.05 2.95 7.60 -2.91 -0.02 2.93 15 6 C 0.02 0.93 5.30 84.65 0.45 1.38 15 7 N -0.92 -53.03 11.32 21.45 0.24 -52.79 15 8 Si 0.96 43.89 29.54 68.60 2.03 45.92 15 9 H -0.27 -12.06 7.11 99.48 0.71 -11.35 15 10 H -0.28 -12.65 7.11 99.48 0.71 -11.94 15 11 H -0.28 -12.26 7.11 99.48 0.71 -11.56 15 12 C -0.03 -1.54 4.75 -19.80 -0.09 -1.63 15 13 C -0.10 -3.94 8.46 22.32 0.19 -3.75 15 14 C -0.05 -1.53 6.32 22.32 0.14 -1.39 15 15 Cl -0.06 -1.71 28.95 -2.72 -0.08 -1.79 15 16 C -0.08 -2.48 9.87 22.46 0.22 -2.26 15 17 C -0.13 -4.35 6.40 -20.21 -0.13 -4.48 15 18 C -0.21 -5.18 11.14 23.54 0.26 -4.92 15 19 C 0.01 0.18 11.96 66.85 0.80 0.98 15 20 O -0.22 -8.37 10.38 -9.41 -0.10 -8.46 15 21 C 0.02 0.87 7.05 22.98 0.16 1.04 15 22 H 0.06 3.49 6.07 -2.39 -0.01 3.47 15 23 H 0.02 1.01 8.14 -2.39 -0.02 0.99 15 24 H 0.04 1.81 7.38 -2.39 -0.02 1.79 15 25 H 0.26 14.39 8.31 -92.71 -0.77 13.62 15 26 H 0.13 5.54 7.54 -2.91 -0.02 5.52 15 27 H 0.16 3.73 8.06 -2.91 -0.02 3.70 15 28 H 0.20 3.00 8.06 -2.91 -0.02 2.97 15 29 H 0.25 3.40 8.06 -2.91 -0.02 3.38 15 Total: -1.00 -65.16 269.25 6.07 -59.09 By element: Atomic # 1 Polarization: 2.52 SS G_CDS: 1.17 Total: 3.69 kcal Atomic # 6 Polarization: -48.47 SS G_CDS: 2.81 Total: -45.66 kcal Atomic # 7 Polarization: -53.03 SS G_CDS: 0.24 Total: -52.79 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: -0.10 Total: -8.46 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 17 Polarization: -1.71 SS G_CDS: -0.08 Total: -1.79 kcal Total: -65.16 6.07 -59.09 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259825807.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.563 kcal (2) G-P(sol) polarization free energy of solvation -65.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds