Wall clock time and date at job start Mon Mar 30 2020 06:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30957 * 125.30097 * 2 1 4 4 C 1.33414 * 109.87996 * 179.97438 * 3 2 1 5 5 Cl 1.73604 * 126.27853 * 179.73331 * 4 3 2 6 6 C 1.38060 * 107.44569 * 0.02562 * 4 3 2 7 7 C 1.40941 * 133.73489 * 179.97438 * 6 4 3 8 8 C 1.35885 * 119.18398 * 180.02562 * 7 6 4 9 9 C 1.40838 * 119.78874 * 359.97438 * 8 7 6 10 10 C 1.50704 * 119.68592 * 179.97438 * 9 8 7 11 11 C 1.50698 * 109.46775 * 270.01978 * 10 9 8 12 12 H 1.07998 * 120.00699 * 0.02562 * 11 10 9 13 13 C 1.37882 * 119.99667 * 179.97438 * 11 10 9 14 14 N 1.31512 * 120.00123 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99980 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46796 * 60.00397 * 15 13 11 17 17 H 1.48500 * 109.47124 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47053 * 300.00483 * 15 13 11 19 19 C 1.34651 * 120.63119 * 0.02562 * 9 8 7 20 20 N 1.34979 * 125.30287 * 179.97438 * 2 1 3 21 21 H 1.08996 * 109.47198 * 89.97329 * 1 2 3 22 22 H 1.08996 * 109.47151 * 209.97902 * 1 2 3 23 23 H 1.09005 * 109.46832 * 329.97395 * 1 2 3 24 24 H 1.07999 * 120.41134 * 359.97438 * 7 6 4 25 25 H 1.07998 * 120.10353 * 179.97438 * 8 7 6 26 26 H 1.08995 * 109.47146 * 30.02075 * 10 9 8 27 27 H 1.08999 * 109.47188 * 150.01895 * 10 9 8 28 28 H 0.96998 * 120.00629 * 179.97438 * 14 13 11 29 29 H 1.07996 * 119.72535 * 180.02562 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2638 1.0688 0.0000 4 6 3.5499 0.7140 0.0006 5 17 4.9123 1.7900 -0.0057 6 6 3.5987 -0.6657 0.0003 7 6 4.6509 -1.6035 0.0002 8 6 4.3562 -2.9300 -0.0005 9 6 3.0112 -3.3479 -0.0006 10 6 2.6870 -4.8197 -0.0020 11 6 2.5791 -5.3088 -1.4233 12 1 2.7306 -4.6228 -2.2436 13 6 2.2880 -6.6326 -1.6766 14 7 2.1040 -7.4681 -0.6778 15 14 2.1535 -7.2388 -3.4384 16 1 3.4438 -7.0149 -4.1387 17 1 1.8342 -8.6891 -3.4398 18 1 1.0753 -6.4943 -4.1371 19 6 2.0122 -2.4451 -0.0005 20 7 2.2871 -1.1016 0.0005 21 1 -0.3633 0.0005 -1.0276 22 1 -0.3633 -0.8901 0.5135 23 1 -0.3633 0.8898 0.5143 24 1 5.6787 -1.2719 -0.0001 25 1 5.1507 -3.6614 -0.0010 26 1 3.4779 -5.3664 0.5114 27 1 1.7397 -4.9835 0.5116 28 1 1.8989 -8.3993 -0.8559 29 1 0.9861 -2.7818 -0.0002 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259832836.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:44 Heat of formation + Delta-G solvation = 48.054031 kcal Electronic energy + Delta-G solvation = -15326.176546 eV Core-core repulsion = 12661.167380 eV Total energy + Delta-G solvation = -2665.009165 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.86995 -38.93821 -37.62237 -35.36853 -34.45493 -33.18887 -31.52690 -29.08021 -27.35345 -25.63454 -23.75125 -22.95042 -21.68320 -18.57862 -18.48267 -17.84693 -17.20899 -16.75217 -16.40748 -15.67846 -15.06609 -14.53756 -14.51180 -13.95881 -13.76570 -13.51299 -13.43889 -13.31360 -12.75356 -12.64960 -12.40761 -12.32006 -12.22818 -11.72625 -11.53979 -11.40175 -11.36318 -10.60410 -10.03250 -8.39977 -8.19599 -6.34244 -0.15957 0.23013 0.79459 1.42959 1.43328 1.51507 1.67094 1.76662 2.34495 2.49848 3.10977 3.41131 3.59802 3.69361 3.82308 4.11338 4.15247 4.51197 4.68857 4.74956 4.88279 4.92232 5.06826 5.17163 5.23208 5.32928 5.57613 5.71905 5.74135 6.08451 6.15950 6.61952 6.77195 7.34952 8.86922 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.031097 B = 0.005461 C = 0.005085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.193647 B = 5126.262495 C = 5504.843616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.165 3.835 3 N -0.468 5.468 4 C 0.024 3.976 5 Cl 0.004 6.996 6 C 0.007 3.993 7 C -0.084 4.084 8 C -0.101 4.101 9 C -0.060 4.060 10 C 0.067 3.933 11 C -0.531 4.531 12 H 0.054 0.946 13 C 0.014 3.986 14 N -0.924 5.924 15 Si 0.957 3.043 16 H -0.270 1.270 17 H -0.283 1.283 18 H -0.270 1.270 19 C 0.023 3.977 20 N -0.354 5.354 21 H 0.093 0.907 22 H 0.090 0.910 23 H 0.105 0.895 24 H 0.171 0.829 25 H 0.149 0.851 26 H 0.020 0.980 27 H 0.018 0.982 28 H 0.266 0.734 29 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.914 12.172 1.548 12.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.090 4.090 3 N -0.186 5.186 4 C -0.137 4.137 5 Cl 0.032 6.968 6 C -0.105 4.105 7 C -0.103 4.103 8 C -0.122 4.122 9 C -0.063 4.063 10 C 0.029 3.971 11 C -0.569 4.569 12 H 0.072 0.928 13 C -0.185 4.185 14 N -0.563 5.563 15 Si 0.783 3.217 16 H -0.195 1.195 17 H -0.208 1.208 18 H -0.195 1.195 19 C -0.095 4.095 20 N -0.025 5.025 21 H 0.111 0.889 22 H 0.109 0.891 23 H 0.123 0.877 24 H 0.189 0.811 25 H 0.167 0.833 26 H 0.039 0.961 27 H 0.037 0.963 28 H 0.075 0.925 29 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 0.517 12.904 1.593 13.012 hybrid contribution 0.459 -1.284 -0.761 1.562 sum 0.976 11.620 0.832 11.691 Atomic orbital electron populations 1.20361 0.81198 1.05483 1.04884 1.23771 0.97108 0.78189 1.09956 1.69548 1.01107 1.28973 1.18930 1.20678 0.89292 0.86803 1.16955 1.98312 1.37271 1.63718 1.97493 1.19300 0.85564 0.93561 1.12122 1.20700 0.98413 0.90781 1.00440 1.21332 0.96432 0.95976 0.98427 1.20128 0.92939 0.97374 0.95824 1.18034 0.96915 0.85452 0.96651 1.21281 1.48803 0.94566 0.92286 0.92753 1.25763 0.94671 0.96989 1.01122 1.70029 1.48540 1.04894 1.32850 0.85611 0.78939 0.77215 0.79983 1.19548 1.20807 1.19489 1.21567 1.01939 0.78563 1.07460 1.42828 1.07416 1.06685 1.45545 0.88885 0.89110 0.87661 0.81140 0.83318 0.96126 0.96325 0.92462 0.80440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.29 10.33 71.24 0.74 -0.55 15 2 C 0.17 5.13 7.96 138.02 1.10 6.23 15 3 N -0.47 -15.97 11.20 -177.02 -1.98 -17.96 15 4 C 0.02 0.79 7.84 84.41 0.66 1.45 15 5 Cl 0.00 0.11 29.32 -2.72 -0.08 0.03 15 6 C 0.01 0.22 6.80 38.76 0.26 0.49 15 7 C -0.08 -2.58 10.11 22.39 0.23 -2.35 15 8 C -0.10 -3.40 9.73 22.36 0.22 -3.18 15 9 C -0.06 -2.31 5.04 -20.05 -0.10 -2.42 15 10 C 0.07 3.13 5.08 29.10 0.15 3.28 15 11 C -0.53 -27.37 9.09 25.60 0.23 -27.14 15 12 H 0.05 2.78 7.74 -2.91 -0.02 2.76 15 13 C 0.01 0.73 5.46 84.66 0.46 1.19 15 14 N -0.92 -51.46 13.29 21.45 0.28 -51.17 15 15 Si 0.96 41.43 29.54 68.60 2.03 43.46 15 16 H -0.27 -11.42 7.11 99.48 0.71 -10.71 15 17 H -0.28 -12.02 7.11 99.48 0.71 -11.31 15 18 H -0.27 -11.35 7.11 99.48 0.71 -10.64 15 19 C 0.02 0.81 10.40 83.04 0.86 1.67 15 20 N -0.35 -12.02 2.95 -337.75 -1.00 -13.02 15 21 H 0.09 1.74 8.14 -2.39 -0.02 1.72 15 22 H 0.09 1.65 8.04 -2.39 -0.02 1.64 15 23 H 0.10 1.88 8.14 -2.38 -0.02 1.86 15 24 H 0.17 4.08 8.06 -2.91 -0.02 4.05 15 25 H 0.15 4.62 8.06 -2.91 -0.02 4.60 15 26 H 0.02 1.01 8.09 -2.39 -0.02 0.99 15 27 H 0.02 0.90 8.07 -2.39 -0.02 0.88 15 28 H 0.27 14.08 8.31 -92.71 -0.77 13.31 15 29 H 0.18 5.56 7.98 -2.91 -0.02 5.54 15 Total: -1.00 -60.52 276.07 5.22 -55.29 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: 1.16 Total: 4.69 kcal Atomic # 6 Polarization: -26.14 SS G_CDS: 4.81 Total: -21.33 kcal Atomic # 7 Polarization: -79.45 SS G_CDS: -2.69 Total: -82.14 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Atomic # 17 Polarization: 0.11 SS G_CDS: -0.08 Total: 0.03 kcal Total: -60.52 5.22 -55.29 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259832836.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.348 kcal (2) G-P(sol) polarization free energy of solvation -60.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds