Wall clock time and date at job start Mon Mar 30 2020 06:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47077 * 2 1 4 4 C 1.50694 * 109.46867 * 119.99720 * 2 1 3 5 5 H 1.08002 * 120.00179 * 119.99762 * 4 2 1 6 6 C 1.37879 * 120.00472 * 300.00079 * 4 2 1 7 7 N 1.31514 * 119.99350 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47326 * 270.00340 * 8 6 4 10 10 H 1.48506 * 109.46545 * 30.00090 * 8 6 4 11 11 H 1.48498 * 109.47210 * 149.99801 * 8 6 4 12 12 C 1.50701 * 109.47098 * 239.99607 * 2 1 3 13 13 C 1.37861 * 119.76057 * 120.00267 * 12 2 1 14 14 C 1.38801 * 119.84936 * 179.97438 * 13 12 2 15 15 N 1.38085 * 134.06064 * 179.97438 * 14 13 12 16 16 H 0.97001 * 126.33718 * 0.02562 * 15 14 13 17 17 C 1.36057 * 107.31065 * 179.97438 * 15 14 13 18 18 N 1.30088 * 110.09406 * 359.97438 * 17 15 14 19 19 C 1.35796 * 109.64553 * 0.02562 * 18 17 15 20 20 C 1.39815 * 133.56900 * 180.02562 * 19 18 17 21 21 Cl 1.73599 * 120.12604 * 359.97438 * 20 19 18 22 22 C 1.37735 * 119.74569 * 179.74303 * 20 19 18 23 23 H 1.09000 * 109.47809 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47703 * 300.00645 * 1 2 3 25 25 H 1.09007 * 109.47140 * 60.00496 * 1 2 3 26 26 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 27 27 H 1.07999 * 120.07693 * 359.95538 * 13 12 2 28 28 H 1.07995 * 124.94812 * 180.02562 * 17 15 14 29 29 H 1.07998 * 119.74704 * 180.27244 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6531 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8303 2.6033 8 14 2.3212 -1.1202 4.0081 9 1 1.3426 -2.1615 4.4119 10 1 3.6292 -1.7582 3.7123 11 1 2.4864 -0.1412 5.1123 12 6 2.0323 -0.7105 -1.2304 13 6 2.8247 -0.0358 -2.1347 14 6 3.2888 -0.6886 -3.2683 15 7 4.0766 -0.3124 -4.3381 16 1 4.4727 0.5614 -4.4810 17 6 4.1953 -1.3948 -5.1539 18 7 3.5378 -2.4021 -4.6584 19 6 2.9514 -2.0343 -3.4901 20 6 2.1481 -2.7042 -2.5623 21 17 1.7214 -4.3672 -2.8195 22 6 1.7007 -2.0411 -1.4411 23 1 -0.3635 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8901 26 1 0.7088 1.1615 3.4843 27 1 3.0834 0.9983 -1.9616 28 1 4.7545 -1.4150 -6.0775 29 1 1.0839 -2.5598 -0.7222 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259834790.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:57 Heat of formation + Delta-G solvation = 50.383625 kcal Electronic energy + Delta-G solvation = -15521.357318 eV Core-core repulsion = 12856.449171 eV Total energy + Delta-G solvation = -2664.908147 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.77838 -37.61589 -36.02539 -33.80593 -32.74279 -30.94075 -29.40988 -27.67616 -25.17953 -22.84366 -22.62427 -21.17638 -19.95926 -17.83604 -16.67796 -15.94914 -15.47994 -14.99134 -14.60186 -14.08761 -13.88612 -13.36116 -12.72011 -12.32274 -12.10647 -11.58485 -11.39268 -11.13878 -10.94980 -10.59614 -10.50629 -10.26066 -10.16329 -10.13324 -9.85482 -9.60045 -9.03446 -8.43281 -7.94372 -7.49240 -6.07016 -4.14244 1.26860 1.89722 2.60701 3.09226 3.13224 3.28348 3.35317 3.39607 4.20010 4.41363 4.44346 5.01710 5.24284 5.46470 5.61244 5.64461 5.89436 6.08693 6.31387 6.68375 6.71309 6.76697 6.93327 7.06073 7.18015 7.32427 7.49577 7.64684 7.84986 8.01335 8.05212 8.30154 8.88257 9.51188 10.98520 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.025748 B = 0.006720 C = 0.006004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.213838 B = 4165.789848 C = 4662.465712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.074 3.926 3 H 0.039 0.961 4 C -0.511 4.511 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.893 3.107 9 H -0.279 1.279 10 H -0.273 1.273 11 H -0.287 1.287 12 C 0.003 3.997 13 C -0.131 4.131 14 C 0.065 3.935 15 N -0.606 5.606 16 H 0.421 0.579 17 C 0.242 3.758 18 N -0.485 5.485 19 C 0.026 3.974 20 C 0.010 3.990 21 Cl -0.075 7.075 22 C -0.097 4.097 23 H 0.031 0.969 24 H 0.088 0.912 25 H 0.010 0.990 26 H 0.262 0.738 27 H 0.124 0.876 28 H 0.211 0.789 29 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.193 -1.234 -11.922 12.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.056 3.944 3 H 0.057 0.943 4 C -0.549 4.549 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.527 5.527 8 Si 0.721 3.279 9 H -0.205 1.205 10 H -0.198 1.198 11 H -0.212 1.212 12 C 0.001 3.999 13 C -0.152 4.152 14 C -0.044 4.044 15 N -0.218 5.218 16 H 0.259 0.741 17 C -0.046 4.046 18 N -0.205 5.205 19 C -0.091 4.091 20 C -0.018 4.018 21 Cl -0.046 7.046 22 C -0.117 4.117 23 H 0.050 0.950 24 H 0.106 0.894 25 H 0.029 0.971 26 H 0.071 0.929 27 H 0.142 0.858 28 H 0.228 0.772 29 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 3.969 -2.154 -12.138 12.951 hybrid contribution 0.684 0.655 0.996 1.374 sum 4.653 -1.499 -11.142 12.168 Atomic orbital electron populations 1.21810 0.97199 0.99646 1.00518 1.17925 0.93121 0.95464 0.87898 0.94296 1.21083 1.31524 1.12585 0.89668 0.92227 1.24934 0.94928 0.94920 0.98958 1.69879 1.36528 1.22760 1.23571 0.86568 0.79425 0.79426 0.82514 1.20533 1.19816 1.21236 1.20439 0.91770 0.92512 0.95186 1.20003 1.02329 1.00334 0.92544 1.18763 0.98345 0.95404 0.91888 1.43096 1.44516 1.14476 1.19744 0.74056 1.25175 1.00135 0.81873 0.97377 1.70371 1.12977 1.28104 1.09059 1.18388 1.03674 0.91723 0.95362 1.20017 1.00608 0.85473 0.95701 1.98321 1.92025 1.17599 1.96629 1.20904 1.00899 0.94800 0.95105 0.94983 0.89370 0.97081 0.92856 0.85840 0.77217 0.83986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 8.78 37.16 0.33 -2.74 15 2 C 0.07 1.75 2.47 -92.93 -0.23 1.52 15 3 H 0.04 0.97 7.86 -51.93 -0.41 0.56 15 4 C -0.51 -13.29 8.22 -34.44 -0.28 -13.58 15 5 H 0.06 1.56 7.59 -52.49 -0.40 1.17 15 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 15 7 N -0.89 -24.25 11.32 55.43 0.63 -23.62 15 8 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 15 9 H -0.28 -6.45 7.11 56.52 0.40 -6.04 15 10 H -0.27 -6.33 7.11 56.52 0.40 -5.93 15 11 H -0.29 -6.62 7.11 56.52 0.40 -6.22 15 12 C 0.00 0.06 4.74 -104.57 -0.50 -0.43 15 13 C -0.13 -2.38 9.68 -39.51 -0.38 -2.77 15 14 C 0.07 1.10 7.30 -83.99 -0.61 0.49 15 15 N -0.61 -7.33 6.23 -11.77 -0.07 -7.40 15 16 H 0.42 3.41 8.96 -40.82 -0.37 3.04 15 17 C 0.24 2.89 12.97 -89.78 -1.16 1.73 15 18 N -0.49 -8.11 11.27 -12.03 -0.14 -8.24 15 19 C 0.03 0.48 7.03 -84.67 -0.60 -0.11 15 20 C 0.01 0.20 6.35 -39.18 -0.25 -0.05 15 21 Cl -0.07 -1.30 28.97 -51.86 -1.50 -2.81 15 22 C -0.10 -1.93 8.44 -39.58 -0.33 -2.27 15 23 H 0.03 0.70 7.39 -51.93 -0.38 0.32 15 24 H 0.09 2.22 6.07 -51.93 -0.32 1.90 15 25 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 15 26 H 0.26 6.83 8.31 -40.82 -0.34 6.50 15 27 H 0.12 2.04 7.93 -52.49 -0.42 1.62 15 28 H 0.21 1.37 8.06 -52.49 -0.42 0.94 15 29 H 0.14 2.86 7.56 -52.49 -0.40 2.46 15 LS Contribution 267.80 15.07 4.04 4.04 Total: -1.00 -29.98 267.80 -8.85 -38.83 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: -2.66 Total: 0.12 kcal Atomic # 6 Polarization: -12.49 SS G_CDS: -4.11 Total: -16.60 kcal Atomic # 7 Polarization: -39.68 SS G_CDS: 0.42 Total: -39.26 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 17 Polarization: -1.30 SS G_CDS: -1.50 Total: -2.81 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -29.98 -8.85 -38.83 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259834790.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.213 kcal (2) G-P(sol) polarization free energy of solvation -29.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds