Wall clock time and date at job start Mon Mar 30 2020 05:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30038 * 125.38923 * 2 1 4 4 C 1.35936 * 108.52970 * 180.16152 * 3 2 1 5 5 C 1.47622 * 126.42417 * 179.81989 * 4 3 2 6 6 N 1.29927 * 125.06662 * 359.69451 * 5 4 3 7 7 C 1.32820 * 115.96913 * 179.73537 * 6 5 4 8 8 C 1.41149 * 122.76862 * 179.97438 * 7 6 5 9 9 H 1.07992 * 119.99759 * 174.01665 * 8 7 6 10 10 C 1.39603 * 119.99721 * 354.01653 * 8 7 6 11 11 N 1.31084 * 120.00243 * 6.18181 * 10 8 7 12 12 Si 1.86796 * 119.99611 * 186.18646 * 10 8 7 13 13 H 1.48507 * 109.47417 * 94.98024 * 12 10 8 14 14 H 1.48500 * 109.46889 * 214.97899 * 12 10 8 15 15 H 1.48500 * 109.47451 * 334.98264 * 12 10 8 16 16 C 1.37942 * 114.46372 * 359.97438 * 7 6 5 17 17 S 1.70999 * 108.91405 * 0.02562 * 16 7 6 18 18 C 1.36015 * 107.14392 * 359.56089 * 4 3 2 19 19 C 1.50705 * 126.53389 * 180.25760 * 18 4 3 20 20 O 1.34004 * 125.38522 * 179.67009 * 2 1 3 21 21 H 1.08996 * 109.46934 * 180.35140 * 1 2 3 22 22 H 1.08998 * 109.47056 * 300.34811 * 1 2 3 23 23 H 1.09001 * 109.46882 * 60.35121 * 1 2 3 24 24 H 0.96995 * 120.00280 * 180.02562 * 11 10 8 25 25 H 1.07997 * 125.54831 * 179.97438 * 16 7 6 26 26 H 1.09005 * 109.46956 * 90.00149 * 19 18 4 27 27 H 1.08996 * 109.47144 * 210.00035 * 19 18 4 28 28 H 1.08997 * 109.46948 * 330.00532 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2601 1.0601 0.0000 4 6 3.5611 0.6659 -0.0036 5 6 4.7444 1.5484 -0.0086 6 7 4.7070 2.8471 -0.0160 7 6 5.8838 3.4629 -0.0140 8 6 6.0105 4.8687 -0.0217 9 1 6.9849 5.3235 0.0778 10 6 4.8761 5.6709 -0.1579 11 7 3.6839 5.1260 -0.1568 12 14 5.0574 7.5210 -0.3419 13 1 5.0491 7.8784 -1.7833 14 1 3.9277 8.1994 0.3428 15 1 6.3394 7.9560 0.2685 16 6 6.9720 2.6153 -0.0037 17 16 6.4152 0.9985 0.0024 18 6 3.5678 -0.6942 0.0041 19 6 4.7832 -1.5853 0.0091 20 8 2.2830 -1.0925 0.0063 21 1 -0.3633 -1.0276 0.0063 22 1 -0.3633 0.5192 0.8868 23 1 -0.3633 0.5084 -0.8931 24 1 2.8958 5.6834 -0.2518 25 1 8.0073 2.9227 -0.0010 26 1 5.0762 -1.7943 1.0380 27 1 4.5500 -2.5208 -0.4994 28 1 5.6024 -1.0853 -0.5075 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259838644.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:28 Heat of formation + Delta-G solvation = 56.807056 kcal Electronic energy + Delta-G solvation = -15468.947412 eV Core-core repulsion = 12806.361512 eV Total energy + Delta-G solvation = -2662.585899 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.84257 -37.75595 -34.48694 -33.34696 -32.81079 -29.92494 -29.20361 -25.87959 -25.54887 -23.30235 -21.34420 -20.40090 -18.88883 -17.35981 -16.53860 -16.27949 -15.19439 -15.05286 -14.16324 -13.97525 -13.38561 -13.30723 -12.95328 -12.85108 -12.59590 -12.56423 -12.12265 -11.54030 -11.48478 -11.25737 -10.74783 -10.68188 -10.41460 -9.96238 -9.62881 -9.29025 -8.59022 -8.06841 -7.85373 -7.17888 -6.47264 -4.34864 1.46175 2.22399 2.62176 2.94995 3.03341 3.13010 3.17281 3.39033 3.57150 4.03481 4.39939 4.42705 4.92563 5.09192 5.24823 5.49184 5.52986 5.60858 5.62721 5.74057 5.87758 6.28722 6.31902 6.43138 6.86754 7.07798 7.25596 7.47817 8.11778 8.24114 8.55273 8.89582 9.60554 10.38657 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.024466 B = 0.007604 C = 0.005829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.156330 B = 3681.458652 C = 4802.468845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 C 0.171 3.829 3 N -0.434 5.434 4 C 0.085 3.915 5 C 0.102 3.898 6 N -0.362 5.362 7 C 0.224 3.776 8 C -0.431 4.431 9 H 0.086 0.914 10 C 0.068 3.932 11 N -0.739 5.739 12 Si 0.911 3.089 13 H -0.270 1.270 14 H -0.277 1.277 15 H -0.262 1.262 16 C -0.458 4.458 17 S 0.001 5.999 18 C -0.045 4.045 19 C -0.067 4.067 20 O -0.205 6.205 21 H 0.083 0.917 22 H 0.094 0.906 23 H 0.094 0.906 24 H 0.275 0.725 25 H 0.141 0.859 26 H 0.087 0.913 27 H 0.079 0.921 28 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.028 -10.321 -0.014 11.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.037 4.037 3 N -0.163 5.163 4 C -0.037 4.037 5 C -0.178 4.178 6 N -0.077 5.077 7 C 0.100 3.900 8 C -0.465 4.465 9 H 0.104 0.896 10 C -0.155 4.155 11 N -0.361 5.361 12 Si 0.736 3.264 13 H -0.196 1.196 14 H -0.202 1.202 15 H -0.186 1.186 16 C -0.598 4.598 17 S 0.249 5.751 18 C -0.101 4.101 19 C -0.124 4.124 20 O -0.093 6.093 21 H 0.102 0.898 22 H 0.113 0.887 23 H 0.113 0.887 24 H 0.086 0.914 25 H 0.159 0.841 26 H 0.105 0.895 27 H 0.098 0.902 28 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.524 -10.271 -0.013 11.223 hybrid contribution 0.463 1.304 -0.111 1.389 sum -4.061 -8.966 -0.124 9.844 Atomic orbital electron populations 1.20161 0.81499 1.03998 1.04992 1.26264 0.96443 0.78607 1.02428 1.70913 1.00852 1.28705 1.15836 1.19023 0.89852 0.89092 1.05718 1.24467 0.91827 0.92534 1.08980 1.67530 1.27535 1.02954 1.09682 1.17935 0.83531 0.95038 0.93460 1.18951 0.94577 0.88385 1.44631 0.89609 1.26021 0.94948 1.01038 0.93495 1.70183 0.98219 1.36788 1.30876 0.86252 0.78999 0.82074 0.79095 1.19552 1.20185 1.18610 1.25457 1.02224 0.93275 1.38807 1.82249 1.03557 1.11937 1.77344 1.23285 0.83818 0.94350 1.08674 1.20383 0.90240 0.97696 1.04088 1.84245 1.16195 1.37792 1.71109 0.89821 0.88743 0.88747 0.91406 0.84083 0.89471 0.90229 0.88430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.54 10.51 36.01 0.38 -0.17 15 2 C 0.17 2.96 8.31 -13.04 -0.11 2.85 15 3 N -0.43 -9.75 11.36 -7.63 -0.09 -9.83 15 4 C 0.09 1.93 7.09 -83.02 -0.59 1.34 15 5 C 0.10 2.58 7.45 -14.53 -0.11 2.47 15 6 N -0.36 -10.57 8.49 -9.20 -0.08 -10.65 15 7 C 0.22 6.48 6.45 -86.44 -0.56 5.93 15 8 C -0.43 -12.25 9.22 -37.97 -0.35 -12.60 15 9 H 0.09 2.29 7.85 -52.49 -0.41 1.88 15 10 C 0.07 1.85 5.48 -17.36 -0.10 1.75 15 11 N -0.74 -21.08 11.72 55.53 0.65 -20.43 15 12 Si 0.91 19.70 29.56 -169.99 -5.03 14.68 15 13 H -0.27 -5.75 7.11 56.52 0.40 -5.35 15 14 H -0.28 -5.84 7.11 56.52 0.40 -5.44 15 15 H -0.26 -5.52 7.11 56.52 0.40 -5.12 15 16 C -0.46 -11.85 10.99 30.62 0.34 -11.51 15 17 S 0.00 0.02 19.78 -107.50 -2.13 -2.10 15 18 C -0.04 -0.82 7.44 -35.10 -0.26 -1.08 15 19 C -0.07 -0.92 9.65 36.01 0.35 -0.57 15 20 O -0.20 -3.48 10.74 5.93 0.06 -3.41 15 21 H 0.08 0.68 8.14 -51.93 -0.42 0.25 15 22 H 0.09 0.96 8.14 -51.93 -0.42 0.53 15 23 H 0.09 0.96 8.14 -51.93 -0.42 0.53 15 24 H 0.28 7.17 8.30 -40.82 -0.34 6.83 15 25 H 0.14 3.42 8.06 -52.49 -0.42 3.00 15 26 H 0.09 1.05 8.14 -51.93 -0.42 0.63 15 27 H 0.08 0.85 8.14 -51.93 -0.42 0.43 15 28 H 0.10 1.43 5.37 -45.02 -0.24 1.18 15 LS Contribution 265.83 15.07 4.01 4.01 Total: -1.00 -34.03 265.83 -5.93 -39.96 By element: Atomic # 1 Polarization: 1.68 SS G_CDS: -2.32 Total: -0.64 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: -1.01 Total: -11.58 kcal Atomic # 7 Polarization: -41.39 SS G_CDS: 0.49 Total: -40.91 kcal Atomic # 8 Polarization: -3.48 SS G_CDS: 0.06 Total: -3.41 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.03 Total: 14.68 kcal Atomic # 16 Polarization: 0.02 SS G_CDS: -2.13 Total: -2.10 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -34.03 -5.93 -39.96 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259838644.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.764 kcal (2) G-P(sol) polarization free energy of solvation -34.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds