Wall clock time and date at job start Mon Mar 30 2020 05:51:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30038 * 125.38923 * 2 1 4 4 C 1.35936 * 108.52970 * 180.16152 * 3 2 1 5 5 C 1.47622 * 126.42417 * 179.81989 * 4 3 2 6 6 N 1.29927 * 125.06662 * 359.69451 * 5 4 3 7 7 C 1.32820 * 115.96913 * 179.73537 * 6 5 4 8 8 C 1.41149 * 122.76862 * 179.97438 * 7 6 5 9 9 H 1.07992 * 119.99759 * 174.01665 * 8 7 6 10 10 C 1.39603 * 119.99721 * 354.01653 * 8 7 6 11 11 N 1.31084 * 120.00243 * 6.18181 * 10 8 7 12 12 Si 1.86796 * 119.99611 * 186.18646 * 10 8 7 13 13 H 1.48507 * 109.47417 * 94.98024 * 12 10 8 14 14 H 1.48500 * 109.46889 * 214.97899 * 12 10 8 15 15 H 1.48500 * 109.47451 * 334.98264 * 12 10 8 16 16 C 1.37942 * 114.46372 * 359.97438 * 7 6 5 17 17 S 1.70999 * 108.91405 * 0.02562 * 16 7 6 18 18 C 1.36015 * 107.14392 * 359.56089 * 4 3 2 19 19 C 1.50705 * 126.53389 * 180.25760 * 18 4 3 20 20 O 1.34004 * 125.38522 * 179.67009 * 2 1 3 21 21 H 1.08996 * 109.46934 * 180.35140 * 1 2 3 22 22 H 1.08998 * 109.47056 * 300.34811 * 1 2 3 23 23 H 1.09001 * 109.46882 * 60.35121 * 1 2 3 24 24 H 0.96995 * 120.00280 * 180.02562 * 11 10 8 25 25 H 1.07997 * 125.54831 * 179.97438 * 16 7 6 26 26 H 1.09005 * 109.46956 * 90.00149 * 19 18 4 27 27 H 1.08996 * 109.47144 * 210.00035 * 19 18 4 28 28 H 1.08997 * 109.46948 * 330.00532 * 19 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2601 1.0601 0.0000 4 6 3.5611 0.6659 -0.0036 5 6 4.7444 1.5484 -0.0086 6 7 4.7070 2.8471 -0.0160 7 6 5.8838 3.4629 -0.0140 8 6 6.0105 4.8687 -0.0217 9 1 6.9849 5.3235 0.0778 10 6 4.8761 5.6709 -0.1579 11 7 3.6839 5.1260 -0.1568 12 14 5.0574 7.5210 -0.3419 13 1 5.0491 7.8784 -1.7833 14 1 3.9277 8.1994 0.3428 15 1 6.3394 7.9560 0.2685 16 6 6.9720 2.6153 -0.0037 17 16 6.4152 0.9985 0.0024 18 6 3.5678 -0.6942 0.0041 19 6 4.7832 -1.5853 0.0091 20 8 2.2830 -1.0925 0.0063 21 1 -0.3633 -1.0276 0.0063 22 1 -0.3633 0.5192 0.8868 23 1 -0.3633 0.5084 -0.8931 24 1 2.8958 5.6834 -0.2518 25 1 8.0073 2.9227 -0.0010 26 1 5.0762 -1.7943 1.0380 27 1 4.5500 -2.5208 -0.4994 28 1 5.6024 -1.0853 -0.5075 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259838644.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:28 Heat of formation + Delta-G solvation = 30.789416 kcal Electronic energy + Delta-G solvation = -15470.075621 eV Core-core repulsion = 12806.361512 eV Total energy + Delta-G solvation = -2663.714109 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -44.26990 -39.72217 -36.02732 -35.10677 -34.32802 -31.13203 -30.95938 -27.71176 -27.28186 -24.83224 -22.96468 -21.91901 -20.73857 -19.29869 -17.93736 -17.85043 -17.06430 -16.82601 -15.79420 -15.26212 -14.92450 -14.90506 -14.43253 -14.27463 -13.89387 -13.54674 -13.48263 -13.18569 -13.14768 -13.00513 -12.62547 -12.32931 -12.17985 -11.54785 -11.40091 -11.20088 -10.27499 -9.99056 -9.66878 -9.00310 -8.44239 -6.42908 -0.18797 0.63766 0.79381 1.34219 1.34645 1.51013 1.58795 1.67400 1.73752 2.21856 2.48223 3.07523 3.42108 3.46606 3.77932 4.19737 4.47984 4.59197 4.62487 4.66027 4.70950 4.88881 5.00958 5.06941 5.12498 5.24207 5.32668 5.47803 6.12063 6.52208 6.72912 6.84943 7.67216 8.43620 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.024466 B = 0.007604 C = 0.005829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.156330 B = 3681.458652 C = 4802.468845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 C 0.186 3.814 3 N -0.497 5.497 4 C 0.022 3.978 5 C 0.087 3.913 6 N -0.422 5.422 7 C 0.190 3.810 8 C -0.474 4.474 9 H 0.088 0.912 10 C 0.021 3.979 11 N -0.783 5.783 12 Si 0.994 3.006 13 H -0.263 1.263 14 H -0.268 1.268 15 H -0.253 1.253 16 C -0.488 4.488 17 S 0.106 5.894 18 C -0.012 4.012 19 C -0.069 4.069 20 O -0.194 6.194 21 H 0.122 0.878 22 H 0.104 0.896 23 H 0.104 0.896 24 H 0.278 0.722 25 H 0.149 0.851 26 H 0.111 0.889 27 H 0.120 0.880 28 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.391 -12.299 -0.055 13.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.023 4.023 3 N -0.226 5.226 4 C -0.099 4.099 5 C -0.192 4.192 6 N -0.139 5.139 7 C 0.066 3.934 8 C -0.508 4.508 9 H 0.107 0.893 10 C -0.198 4.198 11 N -0.407 5.407 12 Si 0.814 3.186 13 H -0.188 1.188 14 H -0.192 1.192 15 H -0.176 1.176 16 C -0.627 4.627 17 S 0.356 5.644 18 C -0.069 4.069 19 C -0.126 4.126 20 O -0.082 6.082 21 H 0.140 0.860 22 H 0.123 0.877 23 H 0.123 0.877 24 H 0.088 0.912 25 H 0.167 0.833 26 H 0.129 0.871 27 H 0.138 0.862 28 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.853 -12.281 -0.050 13.205 hybrid contribution 0.554 1.617 -0.089 1.711 sum -4.300 -10.664 -0.139 11.499 Atomic orbital electron populations 1.20534 0.77273 1.06825 1.05918 1.27387 0.98181 0.77530 0.99186 1.70827 1.01696 1.31486 1.18625 1.19180 0.89585 0.90638 1.10472 1.25155 0.94731 0.92527 1.06746 1.67542 1.28228 1.04921 1.13178 1.18394 0.84627 0.96116 0.94245 1.19333 0.95425 0.89235 1.46817 0.89343 1.27022 0.94004 1.06459 0.92287 1.70335 0.99142 1.38863 1.32316 0.85030 0.79387 0.74894 0.79316 1.18777 1.19221 1.17628 1.25927 1.02362 0.96363 1.38030 1.81572 0.99822 1.07703 1.75287 1.23945 0.85326 0.93255 1.04425 1.20657 0.87673 0.98306 1.05977 1.84309 1.15702 1.37450 1.70760 0.85994 0.87709 0.87711 0.91183 0.83314 0.87068 0.86164 0.89424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.95 10.51 71.24 0.75 -0.20 15 2 C 0.19 6.19 8.31 88.38 0.73 6.92 15 3 N -0.50 -22.70 11.36 -292.94 -3.33 -26.02 15 4 C 0.02 0.99 7.09 40.47 0.29 1.27 15 5 C 0.09 4.53 7.45 87.45 0.65 5.18 15 6 N -0.42 -25.83 8.49 -183.02 -1.55 -27.39 15 7 C 0.19 11.53 6.45 39.64 0.26 11.78 15 8 C -0.47 -28.20 9.22 23.31 0.21 -27.98 15 9 H 0.09 4.94 7.85 -2.91 -0.02 4.91 15 10 C 0.02 1.19 5.48 85.13 0.47 1.65 15 11 N -0.78 -46.97 11.72 21.77 0.26 -46.71 15 12 Si 0.99 41.68 29.56 68.60 2.03 43.71 15 13 H -0.26 -10.60 7.11 99.48 0.71 -9.90 15 14 H -0.27 -10.68 7.11 99.48 0.71 -9.98 15 15 H -0.25 -10.07 7.11 99.48 0.71 -9.36 15 16 C -0.49 -25.76 10.99 67.75 0.74 -25.01 15 17 S 0.11 4.58 19.78 -56.49 -1.12 3.46 15 18 C -0.01 -0.40 7.44 25.17 0.19 -0.21 15 19 C -0.07 -1.63 9.65 71.24 0.69 -0.95 15 20 O -0.19 -6.06 10.74 -1.68 -0.02 -6.08 15 21 H 0.12 1.45 8.14 -2.39 -0.02 1.43 15 22 H 0.10 1.89 8.14 -2.39 -0.02 1.87 15 23 H 0.10 1.89 8.14 -2.39 -0.02 1.87 15 24 H 0.28 15.21 8.30 -92.71 -0.77 14.44 15 25 H 0.15 7.34 8.06 -2.91 -0.02 7.32 15 26 H 0.11 2.19 8.14 -2.38 -0.02 2.17 15 27 H 0.12 1.93 8.14 -2.39 -0.02 1.91 15 28 H 0.09 2.27 5.37 -6.79 -0.04 2.24 15 Total: -1.00 -80.07 265.83 2.42 -77.65 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: 1.17 Total: 8.92 kcal Atomic # 6 Polarization: -32.52 SS G_CDS: 4.98 Total: -27.54 kcal Atomic # 7 Polarization: -95.50 SS G_CDS: -4.63 Total: -100.12 kcal Atomic # 8 Polarization: -6.06 SS G_CDS: -0.02 Total: -6.08 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.71 kcal Atomic # 16 Polarization: 4.58 SS G_CDS: -1.12 Total: 3.46 kcal Total: -80.07 2.42 -77.65 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259838644.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.439 kcal (2) G-P(sol) polarization free energy of solvation -80.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds