Wall clock time and date at job start Mon Mar 30 2020 06:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.40839 * 119.68780 * 2 1 4 4 C 1.35884 * 119.78956 * 179.55755 * 3 2 1 5 5 C 1.40941 * 119.18142 * 0.69137 * 4 3 2 6 6 C 1.38068 * 133.74107 * 179.21910 * 5 4 3 7 7 Cl 1.73603 * 126.27108 * 0.03229 * 6 5 4 8 8 N 1.33415 * 107.44739 * 179.97438 * 6 5 4 9 9 C 1.30963 * 109.88132 * 0.02562 * 8 6 5 10 10 C 1.50701 * 125.30074 * 179.97438 * 9 8 6 11 11 C 1.50699 * 109.46837 * 90.02561 * 10 9 8 12 12 H 1.08002 * 120.00511 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99783 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99573 * 180.27665 * 13 11 10 15 15 Si 1.86800 * 119.99781 * 359.97438 * 13 11 10 16 16 H 1.48501 * 109.46758 * 89.99934 * 15 13 11 17 17 H 1.48499 * 109.47026 * 209.99782 * 15 13 11 18 18 H 1.48496 * 109.47474 * 329.99818 * 15 13 11 19 19 N 1.34982 * 109.39392 * 0.26369 * 9 8 6 20 20 C 1.34652 * 119.68146 * 180.02562 * 2 1 3 21 21 H 1.08998 * 109.47454 * 269.98061 * 1 2 3 22 22 H 1.09005 * 109.46966 * 29.97828 * 1 2 3 23 23 H 1.08996 * 109.47416 * 149.97808 * 1 2 3 24 24 H 1.07997 * 120.10147 * 359.97438 * 3 2 1 25 25 H 1.08001 * 120.40606 * 179.97438 * 4 3 2 26 26 H 1.08992 * 109.47217 * 330.02769 * 10 9 8 27 27 H 1.09005 * 109.46566 * 210.02350 * 10 9 8 28 28 H 0.97004 * 119.99485 * 179.72881 * 14 13 11 29 29 H 1.07998 * 119.72952 * 0.02562 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2046 1.2235 0.0000 4 6 3.5634 1.2259 0.0091 5 6 4.2528 -0.0033 0.0036 6 6 5.5898 -0.3479 -0.0039 7 17 6.9336 0.7511 -0.0084 8 7 5.6594 -1.6803 -0.0058 9 6 4.4528 -2.1893 -0.0005 10 6 4.1285 -3.6610 -0.0012 11 6 4.0270 -4.1536 1.4194 12 1 4.1814 -3.4694 2.2406 13 6 3.7359 -5.4778 1.6707 14 7 3.6420 -5.9064 2.9105 15 14 3.4668 -6.6608 0.2503 16 1 4.7626 -7.2761 -0.1336 17 1 2.5173 -7.7245 0.6652 18 1 2.9066 -5.9222 -0.9097 19 7 3.5449 -1.1905 -0.0008 20 6 2.1738 -1.1698 -0.0005 21 1 -0.3634 -0.0003 1.0276 22 1 -0.3633 0.8902 -0.5135 23 1 -0.3634 -0.8897 -0.5141 24 1 1.6611 2.1568 -0.0004 25 1 4.1083 2.1584 0.0088 26 1 4.9171 -4.2066 -0.5194 27 1 3.1788 -3.8235 -0.5109 28 1 3.4333 -6.8371 3.0873 29 1 1.6242 -2.0995 -0.0014 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259856988.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:09 Heat of formation + Delta-G solvation = 68.100273 kcal Electronic energy + Delta-G solvation = -15518.540505 eV Core-core repulsion = 12854.400610 eV Total energy + Delta-G solvation = -2664.139895 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.41329 -37.62253 -36.27484 -33.58888 -32.80400 -32.24935 -30.31375 -27.29256 -26.41455 -23.50034 -22.37846 -21.74514 -20.09987 -17.15084 -17.01948 -16.56542 -15.50130 -15.30148 -14.70054 -14.31835 -13.89886 -13.51538 -13.21894 -12.51524 -12.30863 -12.18059 -12.09241 -11.93864 -11.41846 -11.17591 -11.03174 -10.74562 -10.53740 -10.10623 -10.08683 -9.72384 -9.53286 -8.75752 -8.70623 -6.94736 -6.18928 -4.20979 1.04537 1.50436 2.20219 3.08226 3.22032 3.28749 3.29925 3.45685 3.58322 4.29680 4.66043 4.82741 5.00279 5.05794 5.10243 5.21576 5.43475 5.46820 5.56745 5.68083 5.98449 6.08283 6.24254 6.39269 6.51362 6.71439 6.84013 6.91408 7.40979 7.58123 8.30379 8.34266 8.83821 9.37607 10.93617 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.018695 B = 0.008010 C = 0.006049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.380754 B = 3494.602588 C = 4627.783897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.119 4.119 3 C -0.123 4.123 4 C -0.070 4.070 5 C -0.006 4.006 6 C 0.052 3.948 7 Cl -0.018 7.018 8 N -0.450 5.450 9 C 0.256 3.744 10 C 0.064 3.936 11 C -0.521 4.521 12 H 0.074 0.926 13 C 0.076 3.924 14 N -0.892 5.892 15 Si 0.877 3.123 16 H -0.271 1.271 17 H -0.284 1.284 18 H -0.265 1.265 19 N -0.362 5.362 20 C 0.073 3.927 21 H 0.073 0.927 22 H 0.069 0.931 23 H 0.068 0.932 24 H 0.132 0.868 25 H 0.141 0.859 26 H 0.053 0.947 27 H 0.036 0.964 28 H 0.267 0.733 29 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.286 13.248 -7.656 16.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.122 4.122 3 C -0.144 4.144 4 C -0.090 4.090 5 C -0.115 4.115 6 C -0.108 4.108 7 Cl 0.010 6.990 8 N -0.165 5.165 9 C -0.001 4.001 10 C 0.025 3.975 11 C -0.559 4.559 12 H 0.092 0.908 13 C -0.127 4.127 14 N -0.529 5.529 15 Si 0.703 3.297 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.190 1.190 19 N -0.032 5.032 20 C -0.047 4.047 21 H 0.091 0.909 22 H 0.087 0.913 23 H 0.087 0.913 24 H 0.150 0.850 25 H 0.159 0.841 26 H 0.071 0.929 27 H 0.054 0.946 28 H 0.077 0.923 29 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -4.482 12.579 -7.550 15.340 hybrid contribution -0.539 -0.122 -0.433 0.702 sum -5.020 12.457 -7.983 15.624 Atomic orbital electron populations 1.20636 0.89479 1.02943 1.02728 1.19404 0.96958 0.91753 1.04119 1.20853 0.93592 0.97518 1.02396 1.20347 0.93968 0.94957 0.99737 1.18814 0.91112 0.87164 1.14393 1.20584 0.85604 0.89747 1.14912 1.98302 1.44548 1.58660 1.97482 1.69738 1.22138 1.06209 1.18427 1.23869 0.80613 0.93065 1.02567 1.18354 0.97726 0.81352 1.00027 1.20771 1.49757 0.95687 0.89727 0.90753 1.24914 0.94347 0.97762 0.95678 1.69885 1.47908 1.16389 1.18748 0.86832 0.78890 0.81178 0.82797 1.19660 1.20961 1.18960 1.42778 1.06085 1.07437 1.46917 1.21563 0.80782 1.00450 1.01919 0.90854 0.91254 0.91260 0.84986 0.84104 0.92882 0.94556 0.92295 0.81480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.94 9.99 36.01 0.36 -0.58 15 2 C -0.12 -1.57 5.85 -104.91 -0.61 -2.19 15 3 C -0.12 -1.52 9.73 -39.44 -0.38 -1.91 15 4 C -0.07 -1.01 10.11 -39.40 -0.40 -1.41 15 5 C -0.01 -0.10 6.80 -84.02 -0.57 -0.68 15 6 C 0.05 1.05 7.84 -16.93 -0.13 0.92 15 7 Cl -0.02 -0.30 29.32 -51.86 -1.52 -1.82 15 8 N -0.45 -10.44 11.20 -7.30 -0.08 -10.53 15 9 C 0.26 5.83 7.15 -155.08 -1.11 4.72 15 10 C 0.06 1.53 4.49 -29.03 -0.13 1.40 15 11 C -0.52 -14.54 9.65 -34.44 -0.33 -14.87 15 12 H 0.07 2.33 7.98 -52.49 -0.42 1.92 15 13 C 0.08 2.13 5.47 -17.82 -0.10 2.03 15 14 N -0.89 -26.63 13.96 55.43 0.77 -25.86 15 15 Si 0.88 20.39 27.47 -169.99 -4.67 15.72 15 16 H -0.27 -6.29 7.11 56.52 0.40 -5.89 15 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 18 H -0.26 -5.75 6.54 56.52 0.37 -5.38 15 19 N -0.36 -7.16 2.95 -58.10 -0.17 -7.33 15 20 C 0.07 1.20 10.40 -16.45 -0.17 1.03 15 21 H 0.07 0.66 8.14 -51.93 -0.42 0.23 15 22 H 0.07 0.52 8.09 -51.93 -0.42 0.10 15 23 H 0.07 0.60 8.07 -51.93 -0.42 0.18 15 24 H 0.13 1.19 8.06 -52.49 -0.42 0.76 15 25 H 0.14 1.63 8.06 -52.49 -0.42 1.20 15 26 H 0.05 1.26 7.57 -51.93 -0.39 0.86 15 27 H 0.04 0.80 7.08 -51.93 -0.37 0.43 15 28 H 0.27 7.41 8.31 -40.82 -0.34 7.07 15 29 H 0.17 2.54 7.97 -52.49 -0.42 2.12 15 LS Contribution 272.44 15.07 4.11 4.11 Total: -1.00 -31.74 272.44 -8.02 -39.75 By element: Atomic # 1 Polarization: 0.36 SS G_CDS: -2.87 Total: -2.51 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: -3.58 Total: -11.53 kcal Atomic # 7 Polarization: -44.24 SS G_CDS: 0.52 Total: -43.72 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -4.67 Total: 15.72 kcal Atomic # 17 Polarization: -0.30 SS G_CDS: -1.52 Total: -1.82 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -31.74 -8.02 -39.75 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259856988.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.854 kcal (2) G-P(sol) polarization free energy of solvation -31.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds