Wall clock time and date at job start Mon Mar 30 2020 06:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.40839 * 119.68780 * 2 1 4 4 C 1.35884 * 119.78956 * 179.55755 * 3 2 1 5 5 C 1.40941 * 119.18142 * 0.69137 * 4 3 2 6 6 C 1.38068 * 133.74107 * 179.21910 * 5 4 3 7 7 Cl 1.73603 * 126.27108 * 0.03229 * 6 5 4 8 8 N 1.33415 * 107.44739 * 179.97438 * 6 5 4 9 9 C 1.30963 * 109.88132 * 0.02562 * 8 6 5 10 10 C 1.50701 * 125.30074 * 179.97438 * 9 8 6 11 11 C 1.50699 * 109.46837 * 90.02561 * 10 9 8 12 12 H 1.08002 * 120.00511 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99783 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99573 * 180.27665 * 13 11 10 15 15 Si 1.86800 * 119.99781 * 359.97438 * 13 11 10 16 16 H 1.48501 * 109.46758 * 89.99934 * 15 13 11 17 17 H 1.48499 * 109.47026 * 209.99782 * 15 13 11 18 18 H 1.48496 * 109.47474 * 329.99818 * 15 13 11 19 19 N 1.34982 * 109.39392 * 0.26369 * 9 8 6 20 20 C 1.34652 * 119.68146 * 180.02562 * 2 1 3 21 21 H 1.08998 * 109.47454 * 269.98061 * 1 2 3 22 22 H 1.09005 * 109.46966 * 29.97828 * 1 2 3 23 23 H 1.08996 * 109.47416 * 149.97808 * 1 2 3 24 24 H 1.07997 * 120.10147 * 359.97438 * 3 2 1 25 25 H 1.08001 * 120.40606 * 179.97438 * 4 3 2 26 26 H 1.08992 * 109.47217 * 330.02769 * 10 9 8 27 27 H 1.09005 * 109.46566 * 210.02350 * 10 9 8 28 28 H 0.97004 * 119.99485 * 179.72881 * 14 13 11 29 29 H 1.07998 * 119.72952 * 0.02562 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2046 1.2235 0.0000 4 6 3.5634 1.2259 0.0091 5 6 4.2528 -0.0033 0.0036 6 6 5.5898 -0.3479 -0.0039 7 17 6.9336 0.7511 -0.0084 8 7 5.6594 -1.6803 -0.0058 9 6 4.4528 -2.1893 -0.0005 10 6 4.1285 -3.6610 -0.0012 11 6 4.0270 -4.1536 1.4194 12 1 4.1814 -3.4694 2.2406 13 6 3.7359 -5.4778 1.6707 14 7 3.6420 -5.9064 2.9105 15 14 3.4668 -6.6608 0.2503 16 1 4.7626 -7.2761 -0.1336 17 1 2.5173 -7.7245 0.6652 18 1 2.9066 -5.9222 -0.9097 19 7 3.5449 -1.1905 -0.0008 20 6 2.1738 -1.1698 -0.0005 21 1 -0.3634 -0.0003 1.0276 22 1 -0.3633 0.8902 -0.5135 23 1 -0.3634 -0.8897 -0.5141 24 1 1.6611 2.1568 -0.0004 25 1 4.1083 2.1584 0.0088 26 1 4.9171 -4.2066 -0.5194 27 1 3.1788 -3.8235 -0.5109 28 1 3.4333 -6.8371 3.0873 29 1 1.6242 -2.0995 -0.0014 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259856988.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:06:08 Heat of formation + Delta-G solvation = 49.017617 kcal Electronic energy + Delta-G solvation = -15519.367991 eV Core-core repulsion = 12854.400610 eV Total energy + Delta-G solvation = -2664.967381 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.83444 -38.86775 -37.62292 -35.48388 -34.27698 -33.56023 -32.06093 -28.66356 -27.68248 -25.20758 -23.77481 -23.06603 -21.63858 -19.13636 -18.56652 -17.77877 -17.01545 -16.62663 -16.30341 -15.78053 -15.14318 -15.03390 -14.43027 -14.18949 -13.89463 -13.38193 -13.28033 -13.14924 -12.88831 -12.57752 -12.42125 -12.31796 -12.15241 -11.81440 -11.65868 -11.40337 -11.24115 -10.84814 -10.07851 -8.36953 -8.29788 -6.43945 -0.14832 0.19491 0.81818 1.37208 1.40121 1.49907 1.69948 1.88777 2.32006 2.39052 2.98321 3.46301 3.67216 3.76221 3.83236 4.01567 4.08685 4.55536 4.64642 4.72815 4.87334 4.88755 5.00656 5.17264 5.19853 5.26525 5.34656 5.40846 5.68995 6.06335 6.20518 6.58904 6.77784 7.19111 8.81731 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.018695 B = 0.008010 C = 0.006049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.380754 B = 3494.602588 C = 4627.783897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.093 4.093 3 C -0.099 4.099 4 C -0.086 4.086 5 C 0.003 3.997 6 C 0.014 3.986 7 Cl 0.003 6.997 8 N -0.483 5.483 9 C 0.204 3.796 10 C 0.076 3.924 11 C -0.527 4.527 12 H 0.018 0.982 13 C 0.018 3.982 14 N -0.943 5.943 15 Si 0.953 3.047 16 H -0.268 1.268 17 H -0.276 1.276 18 H -0.237 1.237 19 N -0.359 5.359 20 C 0.023 3.977 21 H 0.083 0.917 22 H 0.100 0.900 23 H 0.076 0.924 24 H 0.184 0.816 25 H 0.172 0.828 26 H 0.050 0.950 27 H 0.056 0.944 28 H 0.271 0.729 29 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.654 15.240 -9.527 19.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.095 4.095 3 C -0.120 4.120 4 C -0.105 4.105 5 C -0.108 4.108 6 C -0.147 4.147 7 Cl 0.032 6.968 8 N -0.199 5.199 9 C -0.052 4.052 10 C 0.038 3.962 11 C -0.566 4.566 12 H 0.036 0.964 13 C -0.181 4.181 14 N -0.583 5.583 15 Si 0.775 3.225 16 H -0.193 1.193 17 H -0.202 1.202 18 H -0.159 1.159 19 N -0.029 5.029 20 C -0.096 4.096 21 H 0.102 0.898 22 H 0.119 0.881 23 H 0.094 0.906 24 H 0.201 0.799 25 H 0.189 0.811 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -6.863 14.583 -9.430 18.673 hybrid contribution 0.080 -0.475 0.239 0.537 sum -6.784 14.108 -9.191 18.153 Atomic orbital electron populations 1.20808 0.86190 1.04947 1.03901 1.20060 0.99127 0.90853 0.99494 1.21508 0.92976 0.99091 0.98390 1.20825 0.95091 0.94251 1.00341 1.19436 0.90808 0.88234 1.12336 1.20884 0.87295 0.89217 1.17266 1.98284 1.43587 1.57431 1.97546 1.69554 1.23144 1.08272 1.18968 1.23362 0.81566 0.93132 1.07179 1.18066 0.98385 0.82710 0.97083 1.20873 1.49744 0.95258 0.90683 0.96395 1.25924 0.93608 0.99680 0.98870 1.70047 1.49407 1.17193 1.21604 0.85633 0.79097 0.78355 0.79460 1.19308 1.20150 1.15950 1.42837 1.07130 1.07173 1.45773 1.22029 0.79675 1.02326 1.05618 0.89835 0.88098 0.90551 0.79914 0.81056 0.93200 0.92586 0.91956 0.81408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.42 9.99 71.24 0.71 -0.71 15 2 C -0.09 -2.11 5.85 -20.05 -0.12 -2.22 15 3 C -0.10 -1.97 9.73 22.36 0.22 -1.75 15 4 C -0.09 -2.18 10.11 22.39 0.23 -1.96 15 5 C 0.00 0.10 6.80 38.76 0.26 0.37 15 6 C 0.01 0.57 7.84 84.41 0.66 1.23 15 7 Cl 0.00 0.11 29.32 -2.72 -0.08 0.03 15 8 N -0.48 -23.49 11.20 -177.02 -1.98 -25.48 15 9 C 0.20 9.70 7.15 138.01 0.99 10.69 15 10 C 0.08 3.75 4.49 29.10 0.13 3.88 15 11 C -0.53 -31.01 9.65 25.60 0.25 -30.76 15 12 H 0.02 1.21 7.98 -2.91 -0.02 1.18 15 13 C 0.02 1.01 5.47 84.66 0.46 1.47 15 14 N -0.94 -58.61 13.96 21.45 0.30 -58.31 15 15 Si 0.95 42.37 27.47 68.60 1.88 44.26 15 16 H -0.27 -11.74 7.11 99.48 0.71 -11.03 15 17 H -0.28 -11.86 7.11 99.48 0.71 -11.15 15 18 H -0.24 -9.35 6.54 99.48 0.65 -8.70 15 19 N -0.36 -14.41 2.95 -337.74 -1.00 -15.40 15 20 C 0.02 0.73 10.40 83.04 0.86 1.59 15 21 H 0.08 1.11 8.14 -2.39 -0.02 1.09 15 22 H 0.10 0.86 8.09 -2.38 -0.02 0.84 15 23 H 0.08 1.02 8.07 -2.39 -0.02 1.00 15 24 H 0.18 1.89 8.06 -2.91 -0.02 1.87 15 25 H 0.17 3.26 8.06 -2.91 -0.02 3.24 15 26 H 0.05 2.43 7.57 -2.39 -0.02 2.41 15 27 H 0.06 2.46 7.08 -2.38 -0.02 2.45 15 28 H 0.27 15.54 8.31 -92.71 -0.77 14.77 15 29 H 0.17 5.10 7.97 -2.91 -0.02 5.08 15 Total: -1.00 -74.92 272.44 4.89 -70.03 By element: Atomic # 1 Polarization: 1.93 SS G_CDS: 1.11 Total: 3.04 kcal Atomic # 6 Polarization: -22.82 SS G_CDS: 4.65 Total: -18.17 kcal Atomic # 7 Polarization: -96.51 SS G_CDS: -2.68 Total: -99.19 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 1.88 Total: 44.26 kcal Atomic # 17 Polarization: 0.11 SS G_CDS: -0.08 Total: 0.03 kcal Total: -74.92 4.89 -70.03 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259856988.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.046 kcal (2) G-P(sol) polarization free energy of solvation -74.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds