Wall clock time and date at job start Mon Mar 30 2020 05:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50695 * 109.47024 * 2 1 4 4 C 1.35206 * 126.50405 * 90.00252 * 3 2 1 5 5 C 1.47073 * 103.27090 * 179.97438 * 4 3 2 6 6 C 1.47336 * 127.39797 * 179.97438 * 5 4 3 7 7 S 1.71999 * 127.40983 * 359.97438 * 6 5 4 8 8 N 1.69395 * 96.23727 * 180.02562 * 7 6 5 9 9 C 1.29276 * 108.40452 * 359.97438 * 8 7 6 10 10 C 1.39819 * 117.05591 * 0.02562 * 9 8 7 11 11 C 1.40818 * 123.44623 * 179.97438 * 10 9 8 12 12 H 1.07998 * 120.00386 * 158.20595 * 11 10 9 13 13 C 1.39993 * 119.99475 * 338.20549 * 11 10 9 14 14 N 1.30867 * 120.00208 * 345.19442 * 13 11 10 15 15 Si 1.86798 * 119.99780 * 165.18991 * 13 11 10 16 16 H 1.48501 * 109.47018 * 94.77864 * 15 13 11 17 17 H 1.48497 * 109.47501 * 214.77818 * 15 13 11 18 18 H 1.48510 * 109.47199 * 334.78264 * 15 13 11 19 19 N 1.31604 * 105.19152 * 0.26135 * 5 4 3 20 20 O 1.20759 * 111.47856 * 359.53367 * 19 5 4 21 21 H 1.09007 * 109.47160 * 59.99963 * 1 2 3 22 22 H 1.08997 * 109.47349 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47347 * 300.00097 * 1 2 3 24 24 H 1.09004 * 109.47347 * 239.99903 * 2 1 3 25 25 H 1.09002 * 109.47321 * 119.99613 * 2 1 3 26 26 H 1.08000 * 128.36382 * 359.97438 * 4 3 2 27 27 H 1.07996 * 121.47107 * 180.02562 * 9 8 7 28 28 H 0.96995 * 119.99888 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3004 2.1791 1.0868 5 6 2.7514 3.4531 0.5066 6 6 3.1792 4.6637 1.2292 7 16 3.2579 4.8911 2.9323 8 7 3.8222 6.4874 2.8790 9 6 3.9469 6.8350 1.6401 10 6 3.6106 5.8810 0.6749 11 6 3.6950 6.1159 -0.7110 12 1 3.7700 5.2844 -1.3961 13 6 3.6818 7.4274 -1.2006 14 7 3.3049 8.4117 -0.4249 15 14 4.2022 7.7722 -2.9612 16 1 3.0016 7.8060 -3.8346 17 1 4.8972 9.0830 -3.0243 18 1 5.1213 6.7017 -3.4245 19 7 2.6848 3.2813 -0.7964 20 8 2.2985 2.1722 -1.0771 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 1.8934 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 2.2061 1.9134 2.1294 27 1 4.2955 7.8189 1.3630 28 1 3.2961 9.3204 -0.7641 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259859574.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:26 Heat of formation + Delta-G solvation = 71.767232 kcal Electronic energy + Delta-G solvation = -15412.348051 eV Core-core repulsion = 12750.410873 eV Total energy + Delta-G solvation = -2661.937177 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.60699 -37.41003 -34.46276 -33.70579 -33.01546 -29.90184 -29.27276 -26.29936 -23.72430 -23.31474 -22.01691 -20.46132 -18.76861 -17.32995 -16.56686 -16.10288 -15.56094 -15.33746 -14.37132 -14.35563 -13.68700 -12.98930 -12.80975 -12.51574 -12.42144 -12.00610 -11.72758 -11.48555 -11.40724 -11.11513 -11.00423 -10.58684 -10.39857 -9.95205 -9.72863 -9.45350 -9.03473 -8.70333 -7.67152 -7.43860 -7.21812 -4.57745 1.76978 2.32166 2.85854 2.92324 3.00450 3.09646 3.41790 3.46345 3.73351 3.83685 3.88982 4.91952 4.98833 5.22821 5.28883 5.41000 5.55087 5.74184 5.84321 5.96388 6.17897 6.33494 6.40062 6.58242 6.74258 6.87169 7.14702 7.35875 7.74843 8.10976 8.39315 8.45655 9.43419 9.72864 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.020571 B = 0.008066 C = 0.006003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.790284 B = 3470.386082 C = 4663.527213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.036 4.036 3 C -0.050 4.050 4 C -0.245 4.245 5 C 0.162 3.838 6 C -0.340 4.340 7 S 0.117 5.883 8 N -0.471 5.471 9 C 0.121 3.879 10 C 0.058 3.942 11 C -0.369 4.369 12 H 0.105 0.895 13 C 0.066 3.934 14 N -0.780 5.780 15 Si 0.927 3.073 16 H -0.264 1.264 17 H -0.271 1.271 18 H -0.254 1.254 19 N -0.377 5.377 20 O 0.066 5.934 21 H 0.059 0.941 22 H 0.062 0.938 23 H 0.059 0.941 24 H 0.081 0.919 25 H 0.088 0.912 26 H 0.158 0.842 27 H 0.186 0.814 28 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.061 -8.551 -1.260 8.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.074 4.074 3 C -0.112 4.112 4 C -0.267 4.267 5 C 0.006 3.994 6 C -0.467 4.467 7 S 0.265 5.735 8 N -0.286 5.286 9 C -0.087 4.087 10 C 0.043 3.957 11 C -0.404 4.404 12 H 0.123 0.877 13 C -0.156 4.156 14 N -0.405 5.405 15 Si 0.749 3.251 16 H -0.189 1.189 17 H -0.196 1.196 18 H -0.178 1.178 19 N -0.091 5.091 20 O 0.008 5.992 21 H 0.078 0.922 22 H 0.081 0.919 23 H 0.078 0.922 24 H 0.099 0.901 25 H 0.106 0.894 26 H 0.176 0.824 27 H 0.202 0.798 28 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.976 -7.904 -0.077 8.148 hybrid contribution 0.131 0.459 -1.714 1.779 sum -1.845 -7.445 -1.791 7.877 Atomic orbital electron populations 1.21778 0.94176 1.01870 1.02863 1.19949 0.96142 0.87595 1.03738 1.24010 1.03307 0.96422 0.87478 1.23317 1.10057 0.93669 0.99642 1.21611 0.97623 0.92266 0.87906 1.21104 1.31254 0.98721 0.95630 1.82569 1.72444 1.12626 1.05865 1.76072 1.21354 1.07379 1.23821 1.23395 0.96350 1.01499 0.87463 1.18179 0.92865 0.89114 0.95543 1.19694 1.35654 0.93204 0.91805 0.87678 1.26295 0.92029 0.95574 1.01682 1.69686 1.30549 1.02005 1.38245 0.85955 0.80077 0.78957 0.80071 1.18891 1.19570 1.17769 1.74335 1.21739 0.97082 1.15982 1.84619 1.63510 1.18115 1.32980 0.92157 0.91921 0.92208 0.90056 0.89392 0.82418 0.79809 0.89621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.89 37.16 0.37 -1.18 15 2 C -0.04 -0.42 6.49 -27.89 -0.18 -0.60 15 3 C -0.05 -0.86 6.71 -35.39 -0.24 -1.10 15 4 C -0.25 -4.77 11.28 -37.08 -0.42 -5.19 15 5 C 0.16 3.91 7.31 -80.68 -0.59 3.32 15 6 C -0.34 -8.76 6.61 -35.01 -0.23 -8.99 15 7 S 0.12 2.76 23.63 -107.50 -2.54 0.22 15 8 N -0.47 -11.77 11.96 29.73 0.36 -11.42 15 9 C 0.12 3.07 10.01 -18.04 -0.18 2.89 15 10 C 0.06 1.55 5.58 -107.46 -0.60 0.95 15 11 C -0.37 -9.57 8.78 -37.95 -0.33 -9.90 15 12 H 0.11 2.79 6.45 -52.49 -0.34 2.45 15 13 C 0.07 1.54 5.31 -17.31 -0.09 1.45 15 14 N -0.78 -18.38 10.90 55.55 0.61 -17.77 15 15 Si 0.93 17.79 29.59 -169.99 -5.03 12.76 15 16 H -0.26 -5.07 7.11 56.52 0.40 -4.67 15 17 H -0.27 -4.94 7.11 56.52 0.40 -4.54 15 18 H -0.25 -4.94 7.11 56.52 0.40 -4.54 15 19 N -0.38 -9.08 10.38 34.31 0.36 -8.72 15 20 O 0.07 1.35 11.09 17.32 0.19 1.55 15 21 H 0.06 0.67 8.14 -51.92 -0.42 0.25 15 22 H 0.06 0.49 8.14 -51.93 -0.42 0.07 15 23 H 0.06 0.65 8.14 -51.93 -0.42 0.23 15 24 H 0.08 0.82 8.14 -51.93 -0.42 0.40 15 25 H 0.09 0.86 8.14 -51.93 -0.42 0.44 15 26 H 0.16 2.70 8.06 -52.49 -0.42 2.27 15 27 H 0.19 4.54 6.26 -52.49 -0.33 4.21 15 28 H 0.29 6.13 8.30 -40.82 -0.34 5.79 15 LS Contribution 266.63 15.07 4.02 4.02 Total: -1.00 -28.47 266.63 -6.88 -35.35 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -2.34 Total: 2.38 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: -2.50 Total: -18.36 kcal Atomic # 7 Polarization: -39.23 SS G_CDS: 1.32 Total: -37.91 kcal Atomic # 8 Polarization: 1.35 SS G_CDS: 0.19 Total: 1.55 kcal Atomic # 14 Polarization: 17.79 SS G_CDS: -5.03 Total: 12.76 kcal Atomic # 16 Polarization: 2.76 SS G_CDS: -2.54 Total: 0.22 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -28.47 -6.88 -35.35 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259859574.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.115 kcal (2) G-P(sol) polarization free energy of solvation -28.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds