Wall clock time and date at job start Mon Mar 30 2020 05:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50695 * 109.47024 * 2 1 4 4 C 1.35206 * 126.50405 * 90.00252 * 3 2 1 5 5 C 1.47073 * 103.27090 * 179.97438 * 4 3 2 6 6 C 1.47336 * 127.39797 * 179.97438 * 5 4 3 7 7 S 1.71999 * 127.40983 * 359.97438 * 6 5 4 8 8 N 1.69395 * 96.23727 * 180.02562 * 7 6 5 9 9 C 1.29276 * 108.40452 * 359.97438 * 8 7 6 10 10 C 1.39819 * 117.05591 * 0.02562 * 9 8 7 11 11 C 1.40818 * 123.44623 * 179.97438 * 10 9 8 12 12 H 1.07998 * 120.00386 * 158.20595 * 11 10 9 13 13 C 1.39993 * 119.99475 * 338.20549 * 11 10 9 14 14 N 1.30867 * 120.00208 * 345.19442 * 13 11 10 15 15 Si 1.86798 * 119.99780 * 165.18991 * 13 11 10 16 16 H 1.48501 * 109.47018 * 94.77864 * 15 13 11 17 17 H 1.48497 * 109.47501 * 214.77818 * 15 13 11 18 18 H 1.48510 * 109.47199 * 334.78264 * 15 13 11 19 19 N 1.31604 * 105.19152 * 0.26135 * 5 4 3 20 20 O 1.20759 * 111.47856 * 359.53367 * 19 5 4 21 21 H 1.09007 * 109.47160 * 59.99963 * 1 2 3 22 22 H 1.08997 * 109.47349 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47347 * 300.00097 * 1 2 3 24 24 H 1.09004 * 109.47347 * 239.99903 * 2 1 3 25 25 H 1.09002 * 109.47321 * 119.99613 * 2 1 3 26 26 H 1.08000 * 128.36382 * 359.97438 * 4 3 2 27 27 H 1.07996 * 121.47107 * 180.02562 * 9 8 7 28 28 H 0.96995 * 119.99888 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3004 2.1791 1.0868 5 6 2.7514 3.4531 0.5066 6 6 3.1792 4.6637 1.2292 7 16 3.2579 4.8911 2.9323 8 7 3.8222 6.4874 2.8790 9 6 3.9469 6.8350 1.6401 10 6 3.6106 5.8810 0.6749 11 6 3.6950 6.1159 -0.7110 12 1 3.7700 5.2844 -1.3961 13 6 3.6818 7.4274 -1.2006 14 7 3.3049 8.4117 -0.4249 15 14 4.2022 7.7722 -2.9612 16 1 3.0016 7.8060 -3.8346 17 1 4.8972 9.0830 -3.0243 18 1 5.1213 6.7017 -3.4245 19 7 2.6848 3.2813 -0.7964 20 8 2.2985 2.1722 -1.0771 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 1.8934 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 2.2061 1.9134 2.1294 27 1 4.2955 7.8189 1.3630 28 1 3.2961 9.3204 -0.7641 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259859574.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:25 Heat of formation + Delta-G solvation = 55.604066 kcal Electronic energy + Delta-G solvation = -15413.048938 eV Core-core repulsion = 12750.410873 eV Total energy + Delta-G solvation = -2662.638065 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.052 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -45.29767 -39.32251 -35.62019 -35.54618 -34.71354 -31.63893 -30.74612 -28.15771 -25.25079 -24.71533 -23.72479 -22.18488 -20.56132 -18.99341 -18.25597 -17.79800 -17.30385 -17.13071 -15.97345 -15.36002 -15.20697 -14.70208 -14.39114 -14.10839 -13.81148 -13.50887 -13.27481 -13.14324 -12.88157 -12.56357 -12.23221 -12.10293 -11.90092 -11.71777 -11.46417 -11.23880 -10.95888 -10.19181 -9.54231 -9.32458 -8.98912 -6.48074 -0.12463 0.86700 1.19381 1.26485 1.34053 1.47980 1.54111 1.65020 2.08306 2.13804 2.49381 3.07242 3.58640 3.82178 4.14563 4.32850 4.40808 4.50423 4.62415 4.76381 4.86444 4.97356 5.05425 5.15780 5.18491 5.36839 5.44164 5.45592 5.82172 6.18282 6.46048 6.58351 7.81404 7.99772 Molecular weight = 250.05amu Principal moments of inertia in cm(-1) A = 0.020571 B = 0.008066 C = 0.006003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.790284 B = 3470.386082 C = 4663.527213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.034 4.034 3 C -0.027 4.027 4 C -0.256 4.256 5 C 0.124 3.876 6 C -0.366 4.366 7 S 0.158 5.842 8 N -0.486 5.486 9 C 0.114 3.886 10 C 0.028 3.972 11 C -0.399 4.399 12 H 0.090 0.910 13 C 0.035 3.965 14 N -0.799 5.799 15 Si 0.994 3.006 16 H -0.262 1.262 17 H -0.249 1.249 18 H -0.262 1.262 19 N -0.407 5.407 20 O 0.066 5.934 21 H 0.047 0.953 22 H 0.095 0.905 23 H 0.051 0.949 24 H 0.102 0.898 25 H 0.116 0.884 26 H 0.180 0.820 27 H 0.187 0.813 28 H 0.306 0.694 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.543 -10.077 -1.777 10.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.072 4.072 3 C -0.089 4.089 4 C -0.278 4.278 5 C -0.032 4.032 6 C -0.493 4.493 7 S 0.307 5.693 8 N -0.302 5.302 9 C -0.093 4.093 10 C 0.013 3.987 11 C -0.434 4.434 12 H 0.108 0.892 13 C -0.185 4.185 14 N -0.425 5.425 15 Si 0.813 3.187 16 H -0.186 1.186 17 H -0.172 1.172 18 H -0.185 1.185 19 N -0.120 5.120 20 O 0.006 5.994 21 H 0.067 0.933 22 H 0.114 0.886 23 H 0.070 0.930 24 H 0.121 0.879 25 H 0.134 0.866 26 H 0.198 0.802 27 H 0.203 0.797 28 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.460 -9.413 -0.564 9.746 hybrid contribution 0.194 0.763 -1.516 1.708 sum -2.267 -8.650 -2.080 9.181 Atomic orbital electron populations 1.21786 0.93000 1.03776 1.01926 1.20312 0.96901 0.83804 1.06189 1.25018 1.00387 0.97963 0.85572 1.23562 1.10779 0.92113 1.01344 1.21975 0.99109 0.93544 0.88591 1.21597 1.31162 0.99441 0.97058 1.82176 1.71564 1.11264 1.04312 1.75943 1.21856 1.08656 1.23729 1.23345 0.96919 1.01594 0.87430 1.18527 0.93880 0.89966 0.96371 1.19750 1.37917 0.94149 0.91576 0.89198 1.27047 0.91326 0.94512 1.05583 1.69663 1.30063 1.02788 1.39958 0.84987 0.79562 0.79330 0.74797 1.18618 1.17249 1.18534 1.74332 1.22330 0.98700 1.16609 1.84557 1.63025 1.17586 1.34197 0.93346 0.88607 0.92972 0.87913 0.86617 0.80220 0.79709 0.88238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.89 71.98 0.71 -1.84 15 2 C -0.03 -0.66 6.49 29.85 0.19 -0.47 15 3 C -0.03 -0.89 6.71 24.98 0.17 -0.72 15 4 C -0.26 -9.70 11.28 23.89 0.27 -9.43 15 5 C 0.12 6.06 7.31 43.89 0.32 6.38 15 6 C -0.37 -19.27 6.61 25.23 0.17 -19.10 15 7 S 0.16 7.48 23.63 -56.49 -1.34 6.14 15 8 N -0.49 -24.59 11.96 -59.86 -0.72 -25.31 15 9 C 0.11 5.98 10.01 85.45 0.86 6.84 15 10 C 0.03 1.52 5.58 -21.70 -0.12 1.40 15 11 C -0.40 -21.44 8.78 23.33 0.20 -21.24 15 12 H 0.09 4.99 6.45 -2.91 -0.02 4.97 15 13 C 0.03 1.65 5.31 85.26 0.45 2.10 15 14 N -0.80 -37.96 10.90 21.84 0.24 -37.72 15 15 Si 0.99 36.38 29.59 68.60 2.03 38.41 15 16 H -0.26 -9.41 7.11 99.48 0.71 -8.70 15 17 H -0.25 -8.18 7.11 99.48 0.71 -7.47 15 18 H -0.26 -9.78 7.11 99.48 0.71 -9.07 15 19 N -0.41 -19.91 10.38 -45.98 -0.48 -20.39 15 20 O 0.07 2.68 11.09 72.21 0.80 3.48 15 21 H 0.05 0.96 8.14 -2.38 -0.02 0.94 15 22 H 0.10 1.08 8.14 -2.39 -0.02 1.06 15 23 H 0.05 0.99 8.14 -2.38 -0.02 0.97 15 24 H 0.10 1.63 8.14 -2.38 -0.02 1.61 15 25 H 0.12 1.70 8.14 -2.39 -0.02 1.68 15 26 H 0.18 5.80 8.06 -2.91 -0.02 5.78 15 27 H 0.19 9.40 6.26 -2.91 -0.02 9.38 15 28 H 0.31 12.69 8.30 -92.71 -0.77 11.92 15 Total: -1.00 -63.35 266.63 4.96 -58.39 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: 1.19 Total: 13.07 kcal Atomic # 6 Polarization: -39.30 SS G_CDS: 3.22 Total: -36.08 kcal Atomic # 7 Polarization: -82.46 SS G_CDS: -0.96 Total: -83.41 kcal Atomic # 8 Polarization: 2.68 SS G_CDS: 0.80 Total: 3.48 kcal Atomic # 14 Polarization: 36.38 SS G_CDS: 2.03 Total: 38.41 kcal Atomic # 16 Polarization: 7.48 SS G_CDS: -1.34 Total: 6.14 kcal Total: -63.35 4.96 -58.39 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259859574.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.999 kcal (2) G-P(sol) polarization free energy of solvation -63.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds