Wall clock time and date at job start Mon Mar 30 2020 06:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99800 * 2 1 4 4 H 1.48499 * 109.47217 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47027 * 299.99699 * 3 2 1 6 6 H 1.48502 * 109.47400 * 59.99850 * 3 2 1 7 7 C 1.37875 * 120.00384 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00100 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99832 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46940 * 179.97438 * 9 7 2 11 11 C 1.50705 * 109.46937 * 180.02562 * 10 9 7 12 12 N 1.31527 * 125.49315 * 89.97663 * 11 10 9 13 13 N 1.40040 * 108.92059 * 180.02562 * 12 11 10 14 14 C 1.36593 * 132.44266 * 180.02562 * 13 12 11 15 15 C 1.34912 * 120.64878 * 179.97438 * 14 13 12 16 16 C 1.40503 * 120.43997 * 359.97438 * 15 14 13 17 17 C 1.36049 * 119.61016 * 0.03523 * 16 15 14 18 18 C 1.37213 * 107.44527 * 0.02562 * 13 12 11 19 19 C 1.38592 * 125.49150 * 270.02113 * 11 10 9 20 20 Cl 1.73596 * 126.21893 * 359.96185 * 19 11 10 21 21 H 0.96994 * 120.00076 * 0.02562 * 1 2 3 22 22 H 1.09008 * 109.46717 * 60.00566 * 9 7 2 23 23 H 1.08996 * 109.47618 * 300.00527 * 9 7 2 24 24 H 1.08999 * 109.47093 * 60.00748 * 10 9 7 25 25 H 1.09001 * 109.47481 * 300.00266 * 10 9 7 26 26 H 1.07997 * 119.67658 * 359.97438 * 14 13 12 27 27 H 1.07996 * 119.77834 * 179.97438 * 15 14 13 28 28 H 1.08002 * 120.19354 * 180.02562 * 16 15 14 29 29 H 1.08000 * 120.38966 * 180.25573 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0017 10 6 2.2455 -3.6620 0.0015 11 6 1.4920 -4.9671 0.0020 12 7 1.1094 -5.6285 -1.0686 13 7 0.4381 -6.7906 -0.6687 14 6 -0.1477 -7.8048 -1.3715 15 6 -0.7409 -8.8329 -0.7301 16 6 -0.7651 -8.8770 0.6740 17 6 -0.1861 -7.8742 1.3882 18 6 0.4279 -6.8083 0.7033 19 6 1.0899 -5.6636 1.1307 20 17 1.3632 -5.1917 2.7788 21 1 -0.4850 0.8400 -0.0004 22 1 0.6242 -2.5575 -0.8881 23 1 0.6248 -2.5563 0.8919 24 1 2.8727 -3.6039 0.8910 25 1 2.8715 -3.6046 -0.8890 26 1 -0.1360 -7.7836 -2.4512 27 1 -1.2002 -9.6271 -1.2998 28 1 -1.2408 -9.7021 1.1834 29 1 -0.1938 -7.8975 2.4679 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259862173.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:08 Heat of formation + Delta-G solvation = 83.712315 kcal Electronic energy + Delta-G solvation = -15172.768548 eV Core-core repulsion = 12509.305642 eV Total energy + Delta-G solvation = -2663.462906 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.86000 -37.45441 -35.98886 -33.92020 -32.71107 -31.68722 -29.65393 -28.05996 -25.51939 -23.46941 -22.41431 -21.52283 -19.66052 -17.39369 -16.76553 -16.33350 -15.69539 -15.53034 -14.77009 -14.42986 -14.19624 -13.10201 -12.91549 -12.42188 -12.22517 -11.98299 -11.93516 -11.50569 -11.11069 -10.97146 -10.86818 -10.59218 -10.20932 -10.08309 -9.81124 -9.69831 -9.09816 -8.85627 -8.31471 -7.36078 -5.96055 -3.98848 0.74810 1.10003 2.09977 2.85607 2.94428 3.34325 3.34757 3.41905 3.46366 4.34448 4.48620 4.56358 4.74370 4.84038 5.01308 5.40038 5.40718 5.54057 5.58126 5.91564 6.09625 6.21629 6.44483 6.48253 6.62504 6.92589 7.03977 7.70046 7.71200 7.88227 8.03055 8.41653 9.07409 9.64647 11.15369 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.035129 B = 0.005359 C = 0.004957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.863081 B = 5223.649276 C = 5647.477211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.059 0.941 9 C 0.033 3.967 10 C -0.044 4.044 11 C 0.151 3.849 12 N -0.308 5.308 13 N -0.276 5.276 14 C 0.121 3.879 15 C -0.175 4.175 16 C -0.085 4.085 17 C -0.110 4.110 18 C 0.107 3.893 19 C -0.196 4.196 20 Cl -0.033 7.033 21 H 0.260 0.740 22 H 0.019 0.981 23 H 0.023 0.977 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.168 0.832 27 H 0.152 0.848 28 H 0.139 0.861 29 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.284 -18.881 1.582 18.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.557 4.557 8 H 0.077 0.923 9 C -0.005 4.005 10 C -0.084 4.084 11 C -0.007 4.007 12 N -0.132 5.132 13 N -0.042 5.042 14 C -0.004 4.004 15 C -0.197 4.197 16 C -0.108 4.108 17 C -0.129 4.129 18 C -0.012 4.012 19 C -0.234 4.234 20 Cl -0.005 7.005 21 H 0.069 0.931 22 H 0.037 0.963 23 H 0.041 0.959 24 H 0.098 0.902 25 H 0.091 0.909 26 H 0.185 0.815 27 H 0.170 0.830 28 H 0.157 0.843 29 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -1.344 -18.624 0.390 18.677 hybrid contribution 0.261 0.920 0.965 1.359 sum -1.082 -17.704 1.355 17.789 Atomic orbital electron populations 1.69988 1.06075 1.26483 1.50723 1.25009 0.94830 0.99239 0.95295 0.86521 0.80141 0.83734 0.77521 1.19637 1.21073 1.21023 1.21209 0.93120 0.90614 1.50737 0.92311 1.19045 0.93569 0.89955 0.97926 1.20549 0.98148 0.87032 1.02625 1.22871 0.93737 0.96189 0.87909 1.78116 1.19773 0.94666 1.20619 1.46075 1.36807 1.16420 1.04939 1.21497 0.94468 0.85842 0.98635 1.20773 1.04429 0.99369 0.95165 1.21092 0.97736 0.98272 0.93733 1.20577 0.99179 0.92335 1.00852 1.19038 1.00836 0.96843 0.84507 1.20304 1.16593 0.98757 0.87746 1.98297 1.95534 1.91526 1.15140 0.93054 0.96272 0.95872 0.90182 0.90882 0.81458 0.83000 0.84300 0.83652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.40 13.29 55.43 0.74 -26.67 15 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 15 3 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 15 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 15 5 H -0.28 -6.92 7.11 56.52 0.40 -6.52 15 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 15 7 C -0.52 -14.87 9.11 -34.44 -0.31 -15.18 15 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 15 9 C 0.03 0.89 4.96 -27.88 -0.14 0.75 15 10 C -0.04 -0.98 5.55 -27.88 -0.15 -1.13 15 11 C 0.15 3.15 6.41 -82.59 -0.53 2.62 15 12 N -0.31 -6.23 12.66 33.53 0.42 -5.80 15 13 N -0.28 -4.61 3.90 -10.67 -0.04 -4.65 15 14 C 0.12 1.43 11.19 -16.61 -0.19 1.24 15 15 C -0.18 -1.54 9.98 -39.91 -0.40 -1.94 15 16 C -0.09 -0.78 10.07 -39.51 -0.40 -1.18 15 17 C -0.11 -1.33 10.11 -39.40 -0.40 -1.73 15 18 C 0.11 1.76 6.81 -84.22 -0.57 1.18 15 19 C -0.20 -3.70 6.73 -39.18 -0.26 -3.96 15 20 Cl -0.03 -0.58 28.94 -51.86 -1.50 -2.08 15 21 H 0.26 7.48 8.31 -40.82 -0.34 7.14 15 22 H 0.02 0.55 8.14 -51.92 -0.42 0.13 15 23 H 0.02 0.66 8.14 -51.93 -0.42 0.24 15 24 H 0.08 1.68 7.94 -51.93 -0.41 1.27 15 25 H 0.07 1.57 8.14 -51.93 -0.42 1.15 15 26 H 0.17 1.51 8.06 -52.49 -0.42 1.09 15 27 H 0.15 0.76 8.06 -52.49 -0.42 0.34 15 28 H 0.14 0.79 8.06 -52.49 -0.42 0.37 15 29 H 0.15 1.49 8.06 -52.49 -0.42 1.07 15 LS Contribution 276.67 15.07 4.17 4.17 Total: -1.00 -33.38 276.67 -7.60 -40.98 By element: Atomic # 1 Polarization: -2.19 SS G_CDS: -2.91 Total: -5.10 kcal Atomic # 6 Polarization: -14.30 SS G_CDS: -3.45 Total: -17.75 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: 1.12 Total: -37.12 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -1.50 Total: -2.08 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -33.38 -7.60 -40.98 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259862173.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.688 kcal (2) G-P(sol) polarization free energy of solvation -33.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds