Wall clock time and date at job start Mon Mar 30 2020 06:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99800 * 2 1 4 4 H 1.48499 * 109.47217 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47027 * 299.99699 * 3 2 1 6 6 H 1.48502 * 109.47400 * 59.99850 * 3 2 1 7 7 C 1.37875 * 120.00384 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00100 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99832 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46940 * 179.97438 * 9 7 2 11 11 C 1.50705 * 109.46937 * 180.02562 * 10 9 7 12 12 N 1.31527 * 125.49315 * 89.97663 * 11 10 9 13 13 N 1.40040 * 108.92059 * 180.02562 * 12 11 10 14 14 C 1.36593 * 132.44266 * 180.02562 * 13 12 11 15 15 C 1.34912 * 120.64878 * 179.97438 * 14 13 12 16 16 C 1.40503 * 120.43997 * 359.97438 * 15 14 13 17 17 C 1.36049 * 119.61016 * 0.03523 * 16 15 14 18 18 C 1.37213 * 107.44527 * 0.02562 * 13 12 11 19 19 C 1.38592 * 125.49150 * 270.02113 * 11 10 9 20 20 Cl 1.73596 * 126.21893 * 359.96185 * 19 11 10 21 21 H 0.96994 * 120.00076 * 0.02562 * 1 2 3 22 22 H 1.09008 * 109.46717 * 60.00566 * 9 7 2 23 23 H 1.08996 * 109.47618 * 300.00527 * 9 7 2 24 24 H 1.08999 * 109.47093 * 60.00748 * 10 9 7 25 25 H 1.09001 * 109.47481 * 300.00266 * 10 9 7 26 26 H 1.07997 * 119.67658 * 359.97438 * 14 13 12 27 27 H 1.07996 * 119.77834 * 179.97438 * 15 14 13 28 28 H 1.08002 * 120.19354 * 180.02562 * 16 15 14 29 29 H 1.08000 * 120.38966 * 180.25573 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0017 10 6 2.2455 -3.6620 0.0015 11 6 1.4920 -4.9671 0.0020 12 7 1.1094 -5.6285 -1.0686 13 7 0.4381 -6.7906 -0.6687 14 6 -0.1477 -7.8048 -1.3715 15 6 -0.7409 -8.8329 -0.7301 16 6 -0.7651 -8.8770 0.6740 17 6 -0.1861 -7.8742 1.3882 18 6 0.4279 -6.8083 0.7033 19 6 1.0899 -5.6636 1.1307 20 17 1.3632 -5.1917 2.7788 21 1 -0.4850 0.8400 -0.0004 22 1 0.6242 -2.5575 -0.8881 23 1 0.6248 -2.5563 0.8919 24 1 2.8727 -3.6039 0.8910 25 1 2.8715 -3.6046 -0.8890 26 1 -0.1360 -7.7836 -2.4512 27 1 -1.2002 -9.6271 -1.2998 28 1 -1.2408 -9.7021 1.1834 29 1 -0.1938 -7.8975 2.4679 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259862173.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:07 Heat of formation + Delta-G solvation = 63.059121 kcal Electronic energy + Delta-G solvation = -15173.664138 eV Core-core repulsion = 12509.305642 eV Total energy + Delta-G solvation = -2664.358496 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.05160 -38.58904 -37.29100 -35.84743 -34.06321 -33.25578 -31.15213 -29.28807 -27.41570 -24.55848 -23.88292 -23.07142 -21.18374 -18.58218 -18.51359 -17.70875 -16.84241 -16.66052 -16.44459 -15.87036 -15.36231 -14.90105 -14.61538 -14.09271 -13.55952 -13.29900 -13.07228 -12.92841 -12.80882 -12.64200 -12.37110 -12.19528 -11.91180 -11.70944 -11.48335 -11.22627 -11.10504 -10.57351 -10.22814 -8.53949 -8.19805 -6.32157 -0.18841 0.03173 0.93770 1.40282 1.42007 1.45051 1.56177 1.67241 2.40774 2.42083 3.13395 3.28454 3.47345 3.85718 3.91709 4.13493 4.21958 4.35490 4.65182 4.71143 4.75317 4.91226 5.06818 5.23019 5.26947 5.45507 5.47954 5.60978 5.79804 5.88770 6.18564 6.44867 6.83061 7.36914 8.92826 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.035129 B = 0.005359 C = 0.004957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.863081 B = 5223.649276 C = 5647.477211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.001 4.001 3 Si 0.971 3.029 4 H -0.258 1.258 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.540 4.540 8 H 0.068 0.932 9 C 0.047 3.953 10 C -0.029 4.029 11 C 0.123 3.877 12 N -0.351 5.351 13 N -0.277 5.277 14 C 0.083 3.917 15 C -0.140 4.140 16 C -0.054 4.054 17 C -0.134 4.134 18 C 0.108 3.892 19 C -0.235 4.235 20 Cl -0.035 7.035 21 H 0.264 0.736 22 H -0.018 1.018 23 H -0.006 1.006 24 H 0.085 0.915 25 H 0.072 0.928 26 H 0.190 0.810 27 H 0.206 0.794 28 H 0.190 0.810 29 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.900 -21.489 1.597 21.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.794 3.206 4 H -0.182 1.182 5 H -0.204 1.204 6 H -0.203 1.203 7 C -0.578 4.578 8 H 0.086 0.914 9 C 0.009 3.991 10 C -0.068 4.068 11 C -0.033 4.033 12 N -0.177 5.177 13 N -0.043 5.043 14 C -0.041 4.041 15 C -0.160 4.160 16 C -0.077 4.077 17 C -0.154 4.154 18 C -0.013 4.013 19 C -0.273 4.273 20 Cl -0.007 7.007 21 H 0.073 0.927 22 H 0.001 0.999 23 H 0.013 0.987 24 H 0.104 0.896 25 H 0.090 0.910 26 H 0.207 0.793 27 H 0.223 0.777 28 H 0.208 0.792 29 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -1.943 -21.239 0.396 21.331 hybrid contribution 0.249 1.382 0.911 1.674 sum -1.694 -19.856 1.307 19.971 Atomic orbital electron populations 1.70136 1.08010 1.27775 1.51552 1.26031 0.95769 1.03547 0.94520 0.85317 0.79185 0.78294 0.77754 1.18177 1.20405 1.20256 1.21641 0.93771 0.91616 1.50744 0.91403 1.18772 0.93683 0.91972 0.94666 1.20152 0.97090 0.86824 1.02749 1.22497 0.95289 0.96176 0.89374 1.77914 1.22045 0.96771 1.20954 1.46310 1.36228 1.16171 1.05592 1.22377 0.95629 0.85829 1.00264 1.21550 1.00619 0.98403 0.95477 1.21798 0.94282 0.97677 0.93954 1.20950 1.00213 0.92187 1.02010 1.19499 1.00116 0.97012 0.84686 1.20367 1.19256 1.00334 0.87322 1.98267 1.95723 1.91753 1.14958 0.92746 0.99920 0.98723 0.89642 0.90972 0.79342 0.77704 0.79244 0.82061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.29 13.29 21.45 0.28 -59.01 15 2 C 0.00 -0.06 5.46 84.65 0.46 0.40 15 3 Si 0.97 45.64 29.54 68.60 2.03 47.67 15 4 H -0.26 -11.46 7.11 99.48 0.71 -10.76 15 5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 15 6 H -0.28 -12.64 7.11 99.48 0.71 -11.93 15 7 C -0.54 -32.12 9.11 25.60 0.23 -31.88 15 8 H 0.07 3.81 7.74 -2.91 -0.02 3.79 15 9 C 0.05 2.71 4.96 29.85 0.15 2.86 15 10 C -0.03 -1.37 5.55 29.85 0.17 -1.20 15 11 C 0.12 5.44 6.41 42.69 0.27 5.72 15 12 N -0.35 -14.93 12.66 -47.83 -0.61 -15.54 15 13 N -0.28 -9.20 3.90 -187.68 -0.73 -9.93 15 14 C 0.08 1.74 11.19 83.19 0.93 2.67 15 15 C -0.14 -1.66 9.98 22.06 0.22 -1.44 15 16 C -0.05 -0.68 10.07 22.31 0.22 -0.46 15 17 C -0.13 -2.88 10.11 22.39 0.23 -2.66 15 18 C 0.11 3.51 6.81 39.10 0.27 3.78 15 19 C -0.23 -9.24 6.73 22.53 0.15 -9.09 15 20 Cl -0.04 -1.27 28.94 -2.72 -0.08 -1.35 15 21 H 0.26 15.59 8.31 -92.71 -0.77 14.82 15 22 H -0.02 -1.12 8.14 -2.38 -0.02 -1.14 15 23 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 15 24 H 0.09 3.84 7.94 -2.39 -0.02 3.82 15 25 H 0.07 3.32 8.14 -2.39 -0.02 3.30 15 26 H 0.19 2.94 8.06 -2.91 -0.02 2.91 15 27 H 0.21 0.39 8.06 -2.91 -0.02 0.36 15 28 H 0.19 0.62 8.06 -2.91 -0.02 0.59 15 29 H 0.16 2.89 8.06 -2.91 -0.02 2.86 15 Total: -1.00 -78.60 276.67 5.35 -73.25 By element: Atomic # 1 Polarization: -4.94 SS G_CDS: 1.16 Total: -3.78 kcal Atomic # 6 Polarization: -34.61 SS G_CDS: 3.30 Total: -31.31 kcal Atomic # 7 Polarization: -83.42 SS G_CDS: -1.05 Total: -84.48 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Atomic # 17 Polarization: -1.27 SS G_CDS: -0.08 Total: -1.35 kcal Total: -78.60 5.35 -73.25 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259862173.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.307 kcal (2) G-P(sol) polarization free energy of solvation -78.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds