Wall clock time and date at job start Mon Mar 30 2020 06:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30049 * 124.91275 * 2 1 4 4 C 1.35952 * 109.55333 * 180.02562 * 3 2 1 5 5 C 1.39118 * 133.42832 * 179.97438 * 4 3 2 6 6 C 1.40320 * 119.43624 * 180.02562 * 5 4 3 7 7 C 1.41275 * 120.02294 * 179.97438 * 6 5 4 8 8 H 1.07998 * 120.00130 * 209.15008 * 7 6 5 9 9 C 1.39882 * 119.99878 * 29.14933 * 7 6 5 10 10 N 1.30885 * 120.00274 * 197.55971 * 9 7 6 11 11 Si 1.86802 * 119.99797 * 17.55106 * 9 7 6 12 12 H 1.48501 * 109.47473 * 269.99986 * 11 9 7 13 13 H 1.48497 * 109.47235 * 30.00356 * 11 9 7 14 14 H 1.48503 * 109.46964 * 150.00492 * 11 9 7 15 15 C 1.41258 * 119.95832 * 0.25491 * 6 5 4 16 16 Cl 1.73606 * 119.83321 * 179.72374 * 15 6 5 17 17 C 1.36240 * 120.32939 * 359.46403 * 15 6 5 18 18 C 1.39349 * 120.27726 * 0.55327 * 17 15 6 19 19 N 1.36148 * 124.91479 * 180.02562 * 2 1 3 20 20 C 1.46505 * 126.28612 * 359.97438 * 19 2 1 21 21 H 1.08994 * 109.46684 * 269.94520 * 1 2 3 22 22 H 1.08992 * 109.46873 * 29.94327 * 1 2 3 23 23 H 1.08996 * 109.46691 * 149.94590 * 1 2 3 24 24 H 1.07997 * 120.28192 * 0.03051 * 5 4 3 25 25 H 0.97003 * 119.99784 * 355.42388 * 10 9 7 26 26 H 1.08003 * 119.86335 * 180.23315 * 17 15 6 27 27 H 1.09001 * 109.47058 * 269.97348 * 20 19 2 28 28 H 1.09000 * 109.47401 * 29.96998 * 20 19 2 29 29 H 1.08998 * 109.47123 * 149.97675 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2514 1.0664 0.0000 4 6 3.5623 0.7063 -0.0006 5 6 4.7521 1.4273 -0.0013 6 6 5.9752 0.7395 -0.0023 7 6 7.1909 1.4591 -0.0036 8 1 8.0713 1.0313 -0.4599 9 6 7.2543 2.7260 0.5862 10 7 8.2443 3.5326 0.2994 11 14 5.9258 3.2665 1.7831 12 1 4.8329 3.9415 1.0378 13 1 5.3829 2.0786 2.4896 14 1 6.5055 4.2094 2.7732 15 6 5.9902 -0.6730 -0.0080 16 17 7.5052 -1.5207 -0.0166 17 6 4.8216 -1.3735 -0.0016 18 6 3.6003 -0.7025 -0.0009 19 7 2.2863 -1.1164 -0.0005 20 6 1.8142 -2.5033 -0.0006 21 1 -0.3632 -0.0010 1.0276 22 1 -0.3633 0.8904 -0.5129 23 1 -0.3632 -0.8895 -0.5147 24 1 4.7346 2.5071 -0.0010 25 1 8.9685 3.2283 -0.2697 26 1 4.8419 -2.4533 -0.0023 27 1 1.6979 -2.8476 1.0271 28 1 0.8542 -2.5603 -0.5136 29 1 2.5392 -3.1339 -0.5152 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259872264.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:37 Heat of formation + Delta-G solvation = 49.943883 kcal Electronic energy + Delta-G solvation = -15757.657697 eV Core-core repulsion = 13092.730481 eV Total energy + Delta-G solvation = -2664.927215 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 250.057 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.24876 -37.00161 -35.18891 -33.57103 -33.51228 -30.91523 -29.78816 -27.32750 -26.65220 -24.15933 -21.57583 -20.59189 -19.37123 -18.29856 -16.54900 -16.11008 -15.45876 -14.77125 -14.16050 -13.59230 -13.29532 -13.19846 -13.09353 -12.87353 -12.41317 -12.37559 -12.15583 -11.63923 -11.35729 -11.18043 -10.72079 -10.23878 -9.92034 -9.70312 -9.54797 -9.45867 -9.15537 -8.84216 -7.55834 -7.18333 -7.15150 -4.51973 1.79090 2.54646 3.01899 3.31517 3.35362 3.44651 3.54621 3.63954 4.09068 4.49465 4.69651 4.91259 5.10956 5.24472 5.29009 5.46377 5.55963 5.59955 5.81185 5.84786 6.34095 6.38909 6.49888 6.74833 7.17341 7.39251 7.47344 7.56516 7.65234 7.87399 8.22914 8.41296 8.68791 8.73733 10.03745 Molecular weight = 250.06amu Principal moments of inertia in cm(-1) A = 0.021697 B = 0.009587 C = 0.006940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.193810 B = 2920.052503 C = 4033.340177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.260 3.740 3 N -0.511 5.511 4 C 0.106 3.894 5 C -0.223 4.223 6 C 0.096 3.904 7 C -0.498 4.498 8 H 0.088 0.912 9 C 0.047 3.953 10 N -0.812 5.812 11 Si 1.070 2.930 12 H -0.272 1.272 13 H -0.265 1.265 14 H -0.291 1.291 15 C -0.070 4.070 16 Cl -0.096 7.096 17 C -0.076 4.076 18 C -0.046 4.046 19 N -0.494 5.494 20 C 0.087 3.913 21 H 0.079 0.921 22 H 0.089 0.911 23 H 0.070 0.930 24 H 0.121 0.879 25 H 0.287 0.713 26 H 0.106 0.894 27 H 0.064 0.936 28 H 0.077 0.923 29 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.745 -9.393 0.388 14.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.005 4.005 3 N -0.234 5.234 4 C -0.010 4.010 5 C -0.245 4.245 6 C 0.090 3.910 7 C -0.527 4.527 8 H 0.106 0.894 9 C -0.174 4.174 10 N -0.434 5.434 11 Si 0.896 3.104 12 H -0.199 1.199 13 H -0.189 1.189 14 H -0.218 1.218 15 C -0.098 4.098 16 Cl -0.067 7.067 17 C -0.098 4.098 18 C -0.150 4.150 19 N -0.189 5.189 20 C -0.056 4.056 21 H 0.098 0.902 22 H 0.108 0.892 23 H 0.089 0.911 24 H 0.138 0.862 25 H 0.098 0.902 26 H 0.124 0.876 27 H 0.082 0.918 28 H 0.096 0.904 29 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -11.276 -7.473 1.259 13.586 hybrid contribution 1.077 -2.413 -1.084 2.856 sum -10.199 -9.886 0.175 14.205 Atomic orbital electron populations 1.20222 0.85551 1.03665 1.03287 1.23337 0.95031 0.81361 1.00769 1.70387 1.01811 1.27039 1.24203 1.18784 0.90920 0.90030 1.01268 1.19991 0.88205 0.98469 1.17883 1.17302 0.93514 0.88996 0.91171 1.20604 0.96700 1.02245 1.33147 0.89392 1.27234 1.01114 0.91773 0.97231 1.70561 1.08876 1.35287 1.28651 0.83596 0.73750 0.77251 0.75758 1.19871 1.18923 1.21831 1.20386 0.84234 0.92307 1.12834 1.98245 1.33720 1.77406 1.97330 1.18950 0.88480 0.97623 1.04720 1.18165 0.83991 0.94841 1.18013 1.44603 1.04893 1.06137 1.63305 1.21734 1.00653 0.80853 1.02370 0.90218 0.89221 0.91091 0.86195 0.90178 0.87576 0.91777 0.90422 0.90537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.78 10.17 36.01 0.37 -0.41 15 2 C 0.26 4.61 7.85 -154.77 -1.22 3.39 15 3 N -0.51 -11.47 11.28 -8.23 -0.09 -11.56 15 4 C 0.11 2.59 7.21 -84.69 -0.61 1.98 15 5 C -0.22 -5.77 7.31 -38.47 -0.28 -6.05 15 6 C 0.10 2.47 5.14 -106.81 -0.55 1.92 15 7 C -0.50 -13.36 8.82 -37.81 -0.33 -13.69 15 8 H 0.09 2.41 7.35 -52.49 -0.39 2.02 15 9 C 0.05 1.24 5.41 -17.34 -0.09 1.15 15 10 N -0.81 -21.97 13.66 55.54 0.76 -21.21 15 11 Si 1.07 25.61 24.90 -169.99 -4.23 21.38 15 12 H -0.27 -6.41 6.44 56.52 0.36 -6.05 15 13 H -0.26 -6.40 7.03 56.52 0.40 -6.00 15 14 H -0.29 -6.68 7.11 56.52 0.40 -6.28 15 15 C -0.07 -1.62 6.33 -39.15 -0.25 -1.87 15 16 Cl -0.10 -2.00 27.58 -51.86 -1.43 -3.43 15 17 C -0.08 -1.61 9.71 -39.89 -0.39 -2.00 15 18 C -0.05 -1.00 6.88 -83.77 -0.58 -1.57 15 19 N -0.49 -8.66 3.20 -118.28 -0.38 -9.04 15 20 C 0.09 1.00 10.94 59.85 0.65 1.65 15 21 H 0.08 0.78 8.14 -51.93 -0.42 0.35 15 22 H 0.09 0.97 8.14 -51.93 -0.42 0.55 15 23 H 0.07 0.60 7.00 -51.93 -0.36 0.23 15 24 H 0.12 3.16 4.41 -52.49 -0.23 2.93 15 25 H 0.29 7.52 8.73 -40.82 -0.36 7.16 15 26 H 0.11 1.91 8.06 -52.48 -0.42 1.49 15 27 H 0.06 0.65 8.14 -51.93 -0.42 0.22 15 28 H 0.08 0.65 6.99 -51.93 -0.36 0.29 15 29 H 0.08 0.83 8.14 -51.93 -0.42 0.41 15 LS Contribution 262.08 15.07 3.95 3.95 Total: -1.00 -30.73 262.08 -7.35 -38.08 By element: Atomic # 1 Polarization: -0.02 SS G_CDS: -2.65 Total: -2.67 kcal Atomic # 6 Polarization: -12.23 SS G_CDS: -3.27 Total: -15.50 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: 0.29 Total: -41.81 kcal Atomic # 14 Polarization: 25.61 SS G_CDS: -4.23 Total: 21.38 kcal Atomic # 17 Polarization: -2.00 SS G_CDS: -1.43 Total: -3.43 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -30.73 -7.35 -38.08 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259872264.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.026 kcal (2) G-P(sol) polarization free energy of solvation -30.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds